>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Populus trichocarpa (June 2004 Version 1.0)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgI 1 681590 681662 Ala AGC gacagcaaac ttttgtattt 0 0 68.12 43.78 24.34 Both lgI 2 1227246 1227317 Pseudo GCC gtgaacccaa gtagacggtc 0 0 21.32 30.96 -9.64 Eufind lgI 3 5613338 5613418 Leu CAA ctttcaagat gagaatgctc 0 0 26.28 10.49 15.79 Eufind lgI 4 6971347 6971418 Met CAT tgtacagtgg acagagtagc 0 0 68.81 41.37 27.44 Both lgI 5 7062330 7062419 Ser TGA attatctttc tttctcggtg 0 0 49.45 32.73 16.72 Both lgI 6 7122527 7122598 Gly TCC ttagcgaaag agtttttctt 0 0 74.33 49.53 24.80 Both lgI 7 7501437 7501509 Phe GAA taacacagtt tgcataactt 0 0 77.43 54.21 23.22 Both lgI 8 7617528 7617599 Thr TGT aagcaacaag tgatttatat 0 0 78.52 50.14 28.38 Both lgI 9 8358314 8358397 Leu CAA gaacaacagc acttaagttt 0 0 73.19 44.49 28.70 Both lgI 10 8524391 8524462 Asn GTT ctgccgttgt atttgattca 0 0 59.72 44.30 15.42 Both lgI 11 9630899 9630977 Leu AAG tccatctcat catatgatgg 9630934 9630942 28.07 16.09 11.98 Eufind lgI 12 9991616 9991697 Ser AGA gaacagcgaa ctttatttat 0 0 84.12 51.69 32.43 Both lgI 13 13823746 13823818 Arg TCT gtagcgtgaa cgttttttat 0 0 73.60 54.76 18.84 Both lgI 14 17243767 17243840 Val CAC atatcaagtt ttttttctga 0 0 86.07 61.32 24.75 Both lgI 15 17661858 17661930 Lys TTT gtaaacagaa attatttgtt 0 0 88.06 63.50 24.56 Both lgI 16 17994000 17994073 Val AAC cacacaagaa tttcgaactt 0 0 76.67 54.09 22.58 Both lgI 17 19038146 19038217 Gly TCC aaaacagcga acaatttttt 0 0 73.14 51.13 22.01 Both lgI 18 19373123 19373204 Ser GCT gtcatgtagc caactatttt 0 0 77.62 43.68 33.94 Both lgI 19 19798086 19798158 Ala TGC ctgcataaaa ttcaattcac 0 0 66.31 41.98 24.33 Both lgI 20 20237416 20237487 Glu TTC tactaataaa ttaatttttg 0 0 72.60 50.65 21.95 Both lgI 21 20715509 20715579 Gly GCC ataacaacag gatatttttt 0 0 71.56 51.49 20.07 Both lgI 22 21288548 21288620 Ala AGC agcatgttgt tttttatttg 0 0 68.12 43.78 24.34 Both lgI 23 21875305 21875376 Pro TGG aacgacaaga agcatttctt 0 0 73.73 45.85 27.88 Both lgI 24 24075874 24075954 Leu AAG ttagcatcag tttctgtttt 0 0 69.68 40.32 29.36 Both lgI 25 24106771 24106852 Ser TGA atcaaataac gatagattat 0 0 80.82 48.39 32.43 Both lgI 26 24112721 24112802 Ser TGA atcaaataac gacagattat 0 0 80.82 48.39 32.43 Both lgI 27 24854341 24854412 Pro TGG ttaataaaac tgctatacgt 0 0 73.73 45.85 27.88 Both lgI 28 26235527 26235598 His GTG cgatcaccta aatgtttccg 0 0 63.70 36.75 26.95 Both lgI 29 26235606 26235689 Tyr GTA acaaatgttt tattcctttt 26235643 26235653 76.33 48.60 27.73 Both lgI 30 27169595 27169668 Pseudo GTT aaaagaccag ctagctctag 0 0 28.58 27.07 1.51 Eufind lgI 31 30741679 30741761 Leu AAG attaatttag tatgatggtc 30741716 30741724 28.55 21.70 6.85 Eufind lgI 32 30788902 30788975 Ile TAT agaaaaacag ccgcttctgt 0 0 85.40 69.82 15.58 Both lgI 33 34253032 34253104 Lys TTT gaacaagcaa tagcataaaa 0 0 88.06 63.50 24.56 Both lgI 34 34893339 34893429 Tyr GTA aaaatagagg ttttaatcct 34893376 34893393 74.39 46.66 27.73 Both lgI 35 35275526 35275455 Asp GTC tgtcaccaag ttttctcttt 0 0 70.78 52.44 18.34 Both lgI 36 27811443 27811371 Glu CTC ttacaataaa ctttttgtat 0 0 79.78 56.24 23.54 Both lgI 37 27290718 27290647 Pro TGG ttcacaaatt agcttcacaa 0 0 73.73 45.85 27.88 Both lgI 38 27289658 27289587 Pro TGG agcatcgtac agttttcatt 0 0 73.73 45.85 27.88 Both lgI 39 27288337 27288266 Pro TGG ggatcataga gttggaatca 0 0 50.34 31.49 18.85 Eufind lgI 40 26305932 26305850 Leu AAG cctaactatc tatgatggcc 26305895 26305887 31.83 24.76 7.07 Eufind lgI 41 25566810 25566726 Met CAT cagacatcat ttttataatt 25566772 25566762 61.15 41.05 20.10 Both lgI 42 25305071 25304990 Ser GCT catcaccaaa aattgttttt 0 0 79.53 46.09 33.44 Both lgI 43 25144733 25144660 Val AAC atgaacaagc aactcctcta 0 0 76.93 54.36 22.57 Both lgI 44 20630202 20630121 Ser CGA gtaaaggcta attttttagc 0 0 81.28 49.43 31.85 Both lgI 45 20435533 20435460 Ile TAT tacgcgtgtt tctctattct 0 0 85.40 69.82 15.58 Both lgI 46 20039500 20039419 Pseudo AAG aataatcatc tatgattgtc 20039463 20039456 21.30 17.19 4.11 Eufind lgI 47 19486630 19486558 Ala TGC gcttgtctgc cgtttctatt 0 0 66.31 41.98 24.33 Both lgI 48 19458700 19458628 Ala TGC cttacaacaa catgggtttt 0 0 66.31 41.98 24.33 Both lgI 49 19055417 19055344 Arg TCG ggtcagacag tagagttttt 0 0 82.11 60.83 21.28 Both lgI 50 17604179 17604108 Gly TCC ggaataacaa ataacaattc 0 0 72.24 47.45 24.79 Both lgI 51 13696698 13696625 Asn GTT agatcaacta ctttcatgcc 0 0 81.73 55.58 26.15 Both lgI 52 11225813 11225742 Cys GCA aagacaactt tttttctctc 0 0 77.60 57.45 20.15 Both lgI 53 7963229 7963146 Leu CAA aacaaggagt gttttgcacc 0 0 71.45 44.32 27.13 Both lgI 54 6895456 6895374 Leu TAA atcaccatca atttgaagag 0 0 64.80 28.31 36.49 Both lgI 55 6620911 6620839 Ala CGC ttaaatatat tcaaaattgt 0 0 63.43 41.85 21.58 Both lgI 56 6525367 6525296 Gln CTG attggcacaa ttttacctct 0 0 71.44 51.51 19.93 Both lgI 57 5477445 5477372 Thr AGT gtatcaacca tttaagtaag 0 0 76.90 50.29 26.61 Both lgI 58 3885344 3885273 Thr TGT gtcatgaatt ttcatcttga 0 0 82.64 57.48 25.16 Both lgI 59 2187373 2187301 Arg ACG tgacatgtag actttctttt 0 0 72.19 50.65 21.54 Both lgI 60 1938338 1938265 Asn GTT gcagcaagaa ggcttttttt 0 0 77.92 51.81 26.11 Both lgI 61 515464 515393 Gly TCC atcaacaaaa tttttacgtg 0 0 73.14 51.13 22.01 Both lgI 62 92436 92355 Leu AAG ttaaccatct tatgatggcc 92400 92395 21.07 12.84 8.23 Eufind   lgII 1 345324 345395 Trp CCA attaacaagt atccccttct 0 0 77.63 55.47 22.16 Both lgII 2 367781 367852 Asp GTC atcgaactgt attttagctt 0 0 70.78 52.44 18.34 Both lgII 3 642629 642708 Leu TAG tgatcatcaa tttttttttc 0 0 68.72 40.52 28.20 Both lgII 4 2022973 2023056 Leu CAA agcatcggac ttttctctct 0 0 73.19 44.49 28.70 Both lgII 5 4455874 4455947 Pseudo GTT ttaacaagct ttcattttgc 0 0 32.77 35.09 -2.32 Eufind lgII 6 5128773 5128844 Gln TTG agacatcaat ttccttttgt 0 0 74.09 57.50 16.59 Both lgII 7 6428540 6428611 Trp CCA actcaccagt attccttttt 0 0 69.26 56.13 13.13 Eufind lgII 8 6842074 6842146 Lys CTT tcaacaacaa ataataagtt 0 0 84.38 62.40 21.98 Both lgII 9 8885601 8885674 Thr AGT ctatcagaaa gcaaagtgat 0 0 74.28 46.95 27.33 Both lgII 10 8957397 8957467 Gly GCC tataaaagca agtgtttctt 0 0 63.64 43.57 20.07 Both lgII 11 9025574 9025647 Thr AGT ttgtcaaata acttggttat 0 0 76.90 50.29 26.61 Both lgII 12 9554436 9554508 Arg CCT gaaagtcgta ttttgtaacc 0 0 72.14 52.52 19.62 Both lgII 13 12284861 12284948 Tyr GTA gttatcaaat attttttaca 12284898 12284912 76.64 48.91 27.73 Both lgII 14 12290829 12290916 Tyr GTA gttatccaat attttttaca 12290866 12290880 76.64 48.91 27.73 Both lgII 15 12646515 12646598 Leu CAA aaacagcaag atcttttcga 0 0 73.19 44.49 28.70 Both lgII 16 13208987 13209058 Gln CTG gttcaaaagt actttttctt 0 0 68.64 48.70 19.94 Both lgII 17 16588929 16589001 Phe GAA catacaagta ttgttttttg 0 0 77.43 54.21 23.22 Both lgII 18 16769390 16769462 Phe GAA atgccaaccg tttttctttt 0 0 77.43 54.21 23.22 Both lgII 19 17550706 17550777 Pro AGG atgataacaa tcttctctgt 0 0 71.75 43.88 27.87 Both lgII 20 18488179 18488252 Ile AAT actacaaaat ccattttttg 0 0 83.89 61.17 22.72 Both lgII 21 21394100 21394173 Asn GTT gactcaagca cttccatttt 0 0 77.92 51.81 26.11 Both lgII 22 21866032 21866104 Arg TCT attgtgaata tgttctttct 0 0 71.91 51.77 20.14 Both lgII 23 23284302 23284374 Lys TTT tgtcgaacgc gttttttgac 0 0 85.28 62.04 23.24 Both lgII 24 23931365 23931281 Met CAT aacaacattt ccattatttt 23931327 23931317 61.15 41.05 20.10 Both lgII 25 21395921 21395840 Ser AGA atcaactgtt atttttgttt 0 0 82.35 52.68 29.67 Both lgII 26 16755655 16755583 Ala TGC aatctcaaat cttttgcatg 0 0 66.31 41.98 24.33 Both lgII 27 14044259 14044188 Cys GCA aagccaatcg tttttattaa 0 0 78.18 58.76 19.42 Both lgII 28 12079518 12079445 Val CAC ttatcgaatc aaacatgttt 0 0 85.42 60.67 24.75 Both lgII 29 11847976 11847906 Gly GCC atatcaacaa tggaggagca 0 0 71.56 51.49 20.07 Both lgII 30 11552646 11552566 Leu AAG gtcaacaaat tttctttttc 0 0 69.68 40.32 29.36 Both lgII 31 11038168 11038096 Lys CTT cttccatcaa tttccgtttt 0 0 84.38 62.40 21.98 Both lgII 32 10909114 10909042 Glu CTC aaccaagaaa acgtttttta 0 0 77.21 53.67 23.54 Both lgII 33 10392799 10392728 Trp CCA ttgacagtaa attcccaaga 0 0 77.63 55.47 22.16 Both lgII 34 7721407 7721334 Pseudo ??? tggagagcaa ttctttattt 0 0 29.80 6.86 22.94 Eufind lgII 35 7676237 7676164 Pseudo ACG agatgaggtg cgatgtcagg 0 0 33.94 37.56 -3.62 Eufind lgII 36 7029471 7029387 Met CAT gagccatcat aatgggtttt 7029433 7029423 61.15 41.05 20.10 Both lgII 37 7009386 7009293 Tyr GTA tattcgacaa gttttttgga 7009349 7009329 75.55 47.82 27.73 Both lgII 38 6424113 6424041 Arg TCT cgagcaatca tctgttttgt 0 0 70.00 54.05 15.95 Both lgII 39 5812614 5812543 Gln TTG gacagcacca tttgttctcg 0 0 74.09 57.50 16.59 Both lgII 40 4472835 4472765 Cys GCA actaaatcaa tgtcaacaaa 0 0 27.57 11.91 15.66 Eufind lgII 41 2653177 2653107 Gly GCC tcatcaaaac ttctaatttt 0 0 66.36 48.28 18.08 Both lgII 42 2023179 2023108 Glu TTC gaaataagca tttttatcat 0 0 72.60 50.65 21.95 Both lgII 43 1982209 1982138 Glu TTC agcaaaagca tttttcacta 0 0 72.60 50.65 21.95 Both lgII 44 1786631 1786559 Glu CTC cgcgccaaca agtcattctt 0 0 77.31 53.42 23.89 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgIII 1 20242 20316 Pro TGG gggggtgaga ccataacctt 0 0 50.18 22.39 27.79 Both lgIII 2 3739080 3739166 Ser GGA tcattatgta caccttcacc 0 0 55.31 28.95 26.36 Both lgIII 3 4722542 4722623 Ser AGA aagaagtgca gatttcatat 0 0 81.73 51.60 30.13 Both lgIII 4 4725134 4725215 Ser AGA aagaagtgca gatttcatat 0 0 81.73 51.60 30.13 Both lgIII 5 5614714 5614786 Arg TCT tttacgtgca actttcattt 0 0 73.60 54.76 18.84 Both lgIII 6 9459815 9459886 Trp CCA tacatcaacg attcccttca 0 0 77.63 55.47 22.16 Both lgIII 7 9658258 9658329 Asp GTC cgatcatcaa atagtttttg 0 0 70.78 52.44 18.34 Both lgIII 8 10929479 10929552 Asn GTT ctttcaacta ttttttttca 0 0 81.02 57.80 23.22 Both lgIII 9 11784943 11785026 Leu CAA gtcgtatagt atttttcctt 0 0 73.19 44.49 28.70 Both lgIII 10 12254797 12254869 Ala AGC caaatcaaca ttttctcttg 0 0 68.12 43.78 24.34 Both lgIII 11 12433651 12433723 Ala AGC ccctgtctct ttctttttgg 0 0 68.12 43.78 24.34 Both lgIII 12 12512636 12512719 Leu CAA agcatccaac ttttattatt 0 0 73.19 44.49 28.70 Both lgIII 13 13011164 13011236 Ala CGC acaacaagtc gccgtatatt 0 0 63.43 41.85 21.58 Both lgIII 14 13060578 13060649 Gln CTG gagtgttcga ttcgttttct 0 0 69.79 49.85 19.94 Both lgIII 15 15480569 15480640 Thr TGT atttcaaatt tctttgtaat 0 0 82.64 57.48 25.16 Both lgIII 16 15885290 15885361 Met CAT taaatcaacc gccagagtgg 0 0 67.87 40.24 27.63 Both lgIII 17 16219617 16219688 His GTG gtatcacctt tcattctgaa 0 0 63.70 36.75 26.95 Both lgIII 18 17203575 17203647 Arg ACG cggcatgaaa tggttgattt 0 0 73.66 52.08 21.58 Both lgIII 19 18898288 18898360 Ala AGC ggttgcaaat ttcttttatt 0 0 68.12 43.78 24.34 Both lgIII 20 16178059 16177978 Leu AAG agccgatgaa tatgatggcc 16178023 16178015 22.53 17.51 5.02 Eufind lgIII 21 16007640 16007558 Ile AAT actaactatc tatgatggcc 16007603 16007595 23.59 16.16 7.43 Eufind lgIII 22 15734658 15734574 Met CAT tctaccaaat agtgagatct 15734620 15734610 61.15 41.05 20.10 Both lgIII 23 15229533 15229452 Ser TGA cagcaccagt gctttttatt 0 0 80.82 48.39 32.43 Both lgIII 24 14926530 14926459 Gln TTG ttatcaagaa tttctcttct 0 0 74.09 57.50 16.59 Both lgIII 25 14714367 14714295 Lys CTT acacaaccaa aattggtttt 0 0 84.38 62.40 21.98 Both lgIII 26 14408210 14408138 Ala TGC attatcgaaa tttcgtttat 0 0 69.90 45.16 24.74 Both lgIII 27 14287308 14287226 Pseudo AAA aaaaatcatc taaaatgacc 14287271 14287263 24.80 25.07 -0.27 Eufind lgIII 28 14083968 14083887 Phe AAA attaactatt tatgatagtc 14083931 14083924 30.34 24.07 6.27 Eufind lgIII 29 12538772 12538701 Gly TCC gcaaccggaa aatttgaagt 0 0 73.14 51.13 22.01 Both lgIII 30 12244077 12244005 Phe GAA gagtacaact taaaagtttt 0 0 77.43 54.21 23.22 Both lgIII 31 12006566 12006495 Asp GTC ttacaagcgt actgactttt 0 0 69.46 51.11 18.35 Both lgIII 32 11962864 11962793 Cys GCA agagcacctt cttttaatat 0 0 78.18 58.76 19.42 Both lgIII 33 11506309 11506226 Leu CAA tatcaaatat ctctgatatt 0 0 73.19 44.49 28.70 Both lgIII 34 9679892 9679820 Ala AGC tccacgcaaa ctttttcccc 0 0 68.12 43.78 24.34 Both lgIII 35 8559308 8559235 Pro TGG accaattgaa cttattattt 0 0 53.45 28.43 25.02 Both lgIII 36 6988157 6988074 Leu CAA ttacaaaatt ttatttttga 0 0 71.45 44.32 27.13 Both lgIII 37 6011956 6011883 Pro TGG accaattgag tttcgattgt 0 0 30.35 13.25 17.10 Eufind lgIII 38 5441968 5441887 Ser CGA gattaaattg tttttctttt 0 0 78.47 46.62 31.85 Both lgIII 39 4734168 4734096 Arg CCT acagcatcaa tgagtatctt 0 0 72.63 53.36 19.27 Both lgIII 40 3557996 3557915 Ser GCT aaagtgtaac tttaacatct 0 0 77.62 43.68 33.94 Both lgIII 41 3553021 3552940 Ser GCT aaggtgtaac tttattttta 0 0 77.62 43.68 33.94 Both   lgIV 1 2002571 2002642 Asp GTC ctccaacaaa cttttctttt 0 0 70.78 52.44 18.34 Both lgIV 2 2003706 2003777 Asp GTC aatcaacaaa ttttcaattt 0 0 70.78 52.44 18.34 Both lgIV 3 2019224 2019295 Asp GTC cagcatcaag ctttactttt 0 0 68.75 53.18 15.57 Both lgIV 4 2249099 2249170 Gln CTG tgcaagaagt aagttttttg 0 0 71.93 52.34 19.59 Both lgIV 5 3841826 3841896 Gly GCC tatcaaacag tttggttttt 0 0 71.56 51.49 20.07 Both lgIV 6 5892782 5892862 Leu CAG gttaacaaga tatccttttt 0 0 68.57 39.87 28.70 Both lgIV 7 6555537 6555618 Ser AGA aacaaaactc gttttggctc 0 0 82.83 53.16 29.67 Both lgIV 8 10844219 10844291 Arg ACG cacaatcaag ttccttttat 0 0 74.06 52.84 21.22 Both lgIV 9 13246299 13246372 Pseudo AGT ggcacacaga tttctgataa 0 0 33.13 34.33 -1.20 Eufind lgIV 10 13251936 13252009 Pseudo AGT ggcacacaga tttctgataa 0 0 31.05 32.40 -1.35 Eufind lgIV 11 14015293 14015366 Ile AAT atcaacgaat attagtattt 0 0 83.89 61.17 22.72 Both lgIV 12 14080873 14080946 Asn GTT catcaacagt tttttattaa 0 0 78.10 55.29 22.81 Both lgIV 13 14165246 14165319 Val AAC aacagcgaga attattttaa 0 0 76.67 54.09 22.58 Both lgIV 14 14416626 14416697 Gln CTG tataacaaat cctttttatt 0 0 70.84 51.62 19.22 Both lgIV 15 14677093 14677176 Tyr GTA attgcatgaa tgtttctttt 14677130 14677140 76.61 48.88 27.73 Both lgIV 16 15053819 15053891 Glu CTC ttgtcagcaa ataatttctt 0 0 77.21 53.67 23.54 Both lgIV 17 15563002 15562931 Gln TTG aacactccat ctgtacaacc 0 0 74.09 57.50 16.59 Both lgIV 18 8600964 8600891 Met CAT tccccgctaa tgccaatgga 0 0 39.35 20.40 18.95 Eufind lgIV 19 6555922 6555849 Asn GTT ggatcaaata ctttcatttt 0 0 81.83 55.73 26.10 Both lgIV 20 5072979 5072907 Val TAC tatcaaagta tcttcttcga 0 0 81.31 49.96 31.35 Both lgIV 21 4897374 4897304 Gly GCC gtaataacaa gaacttttct 0 0 71.56 51.49 20.07 Both lgIV 22 4515360 4515289 Asp GTC tagcaacaag taaaactttt 0 0 70.78 52.44 18.34 Both lgIV 23 4198697 4198625 Glu CTC caaacaagaa gtcgttttcc 0 0 77.21 53.67 23.54 Both lgIV 24 3089112 3089041 Lys TTT tagacggtaa ttcttttttt 0 0 72.48 57.29 15.19 Both lgIV 25 535402 535331 Trp CCA tatcttcaag atccccaaac 0 0 77.63 55.47 22.16 Both   lgV 1 1104017 1104101 Met CAT aatcaagaaa atattttgtt 1104055 1104065 61.15 41.05 20.10 Both lgV 2 1280935 1281007 Arg ACG tcaacaaaag tcttctcatt 0 0 73.66 52.08 21.58 Both lgV 3 1790859 1790930 Trp CCA taataaaagt attccctgat 0 0 77.63 55.47 22.16 Both lgV 4 2388107 2388179 Lys CTT tcaacaacaa ttttgatttt 0 0 86.03 64.06 21.97 Both lgV 5 2422938 2423009 Thr TGT gtagtcaggt ttgagtattt 0 0 65.33 37.51 27.82 Both lgV 6 2529344 2529416 Glu CTC tgtcatagca caattatttt 0 0 79.78 56.24 23.54 Both lgV 7 9404465 9404549 Met CAT gatccattca attgtttttt 9404503 9404513 61.15 41.05 20.10 Both lgV 8 11555248 11555319 Gln TTG gaccgtatag tttcttttcc 0 0 74.09 57.50 16.59 Both lgV 9 16125506 16125577 Glu TTC cgacaagatc ttttttacat 0 0 72.60 50.65 21.95 Both lgV 10 16342742 16342814 Glu CTC gtgtcgacaa tttaatttta 0 0 77.31 53.42 23.89 Both lgV 11 16343934 16344006 Glu CTC ctaatgtctc tttctaattt 0 0 69.44 45.55 23.89 Both lgV 12 17650870 17650799 Trp CCA cacaacaagt attcccagct 0 0 77.63 55.47 22.16 Both lgV 13 17621235 17621164 Asp GTC aatcaaccaa tactttacca 0 0 70.78 52.44 18.34 Both lgV 14 17615828 17615757 Asp GTC caccaatcaa tctgttacaa 0 0 70.78 52.44 18.34 Both lgV 15 17612995 17612924 Asp GTC tttcaaccag atttttcatt 0 0 70.78 52.44 18.34 Both lgV 16 17368803 17368724 Leu TAG aagagtacaa gatttatttt 0 0 68.72 40.52 28.20 Both lgV 17 16095043 16094960 Leu CAA aaaaccgaag tttctttaaa 0 0 73.19 44.49 28.70 Both lgV 18 12444581 12444510 Gln TTG ccgatacatt ctattttttc 0 0 74.09 57.50 16.59 Both lgV 19 9751157 9751085 Lys CTT tcaacaagaa atagctatat 0 0 84.38 62.40 21.98 Both lgV 20 4055620 4055547 Ile AAT ctaataaata atctaaatat 0 0 81.44 58.72 22.72 Both lgV 21 2840866 2840794 Arg CCG ttctcaatac gtttttgcta 0 0 69.19 51.56 17.63 Both lgV 22 2041505 2041425 Leu AAG aaatcgacaa cgcatctatt 0 0 69.68 40.32 29.36 Both lgV 23 1974498 1974418 Leu AAG gccaacatgt tgattaaaat 0 0 69.68 40.32 29.36 Both lgV 24 1731420 1731347 Val CAC cgacaaaact tgttcctttt 0 0 86.56 62.16 24.40 Both lgV 25 1523580 1523508 Ala AGC atataagatt ttttttttaa 0 0 68.12 43.78 24.34 Both lgV 26 1344321 1344237 Met CAT gaaacaggaa attttttttt 1344283 1344273 61.15 41.05 20.10 Both   lgVI 1 2232732 2232805 Val AAC gtggcatcag atgttttcta 0 0 76.93 54.36 22.57 Both lgVI 2 2239226 2239299 Val AAC gtggcatcag atgttttcta 0 0 76.93 54.36 22.57 Both lgVI 3 5570405 5570477 Arg TCT tcaaacagag atgtgttttg 0 0 66.30 50.72 15.58 Both lgVI 4 5658489 5658561 Lys CTT gagtcaggta ttaattttgt 0 0 84.38 62.40 21.98 Both lgVI 5 5747897 5747968 Pseudo TTT caaacatata tttaaccttt 0 0 52.11 52.58 -0.47 Eufind lgVI 6 6275159 6275240 Ser AGA actccagcct ttaattttgt 0 0 82.35 52.68 29.67 Both lgVI 7 7243477 7243557 Leu AAG gacaacaacg acacataaat 0 0 69.68 40.32 29.36 Both lgVI 8 10336273 10336344 Cys GCA aaagcatcag tttttgttgt 0 0 78.18 58.76 19.42 Both lgVI 9 11151309 11151381 Ala TGC tttataaaac atattatctc 0 0 66.31 41.98 24.33 Both lgVI 10 11552394 11552476 Pseudo TAA ataaactatc tatgatggcc 11552430 11552439 21.11 5.55 15.56 Eufind lgVI 11 11647284 11647357 Thr AGT atgcatgcaa ggaaccgctg 0 0 76.02 48.69 27.33 Both lgVI 12 13934425 13934496 Pro CGG taaatgcaaa tttaaattat 0 0 74.11 46.34 27.77 Both lgVI 13 14824248 14824319 Asp GTC gcacaacaaa tattttattt 0 0 69.46 51.11 18.35 Both lgVI 14 15143750 15143833 Leu CAA atcataagag tccagttttt 0 0 70.82 44.46 26.36 Both lgVI 15 15853185 15853257 Arg CCT gtaacaagaa aatttatttc 0 0 72.63 53.36 19.27 Both lgVI 16 16435858 16435930 Phe GAA gtcatcaaca cttgactttt 0 0 77.43 54.21 23.22 Both lgVI 17 17115547 17115618 Gly TCC atttcagcaa tttttttcct 0 0 71.06 49.04 22.02 Both lgVI 18 17276962 17277034 Arg CCG accaccagtg ctttttatca 0 0 70.60 53.04 17.56 Both lgVI 19 17862349 17862422 Thr AGT cgtctgtaaa caaagagttg 0 0 71.78 49.32 22.46 Both lgVI 20 18203325 18203245 Pseudo AAG aaaccatcta tatgatggcc 18203290 18203285 20.00 18.33 1.67 Eufind lgVI 21 18128210 18128129 Ser TGA acatcaataa gttttctctt 0 0 74.89 43.45 31.44 Both lgVI 22 17148228 17148156 Arg CCT ttaacaagct agcgtttgtt 0 0 74.13 53.22 20.91 Both lgVI 23 16219411 16219330 Ser CGA ttagtaaacc cttctatcct 0 0 77.47 45.62 31.85 Both lgVI 24 14430805 14430724 Ser AGA tcctcaaagg catatttgag 0 0 81.33 50.84 30.49 Both lgVI 25 14136714 14136641 Arg TCG gagcaaacaa tttgattttc 0 0 82.11 60.83 21.28 Both lgVI 26 12240853 12240781 Glu CTC tccacgcaaa atgtttcttt 0 0 71.18 52.38 18.80 Both lgVI 27 12225712 12225640 Glu CTC ttttcgtgat atgttttttt 0 0 73.14 49.60 23.54 Both lgVI 28 10640423 10640352 Gly TCC tccggcgaca ttcttatttt 0 0 74.33 49.53 24.80 Both lgVI 29 10198682 10198609 Pseudo ACT gaaatgaggg taacttagca 0 0 25.41 31.72 -6.31 Eufind lgVI 30 6293214 6293143 Asp GTC tgacaaaaag tttgcttttg 0 0 70.78 52.44 18.34 Both lgVI 31 6210570 6210497 Val CAC aaaataaaac ttcacaccat 0 0 85.69 60.59 25.10 Both lgVI 32 5279528 5279455 Ile TAT gaagcatcgt atgtttctga 0 0 85.40 69.82 15.58 Both lgVI 33 4174641 4174569 Ala TGC tctacaaccg tatcttgtcg 0 0 61.98 37.23 24.75 Both lgVI 34 3246000 3245928 Ala AGC gtctcaacaa cttcaatgtt 0 0 68.12 43.78 24.34 Both lgVI 35 987496 987416 Leu CAG cacaacaaat ttgtttttta 0 0 68.57 39.87 28.70 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgVII 1 5846137 5846209 Lys CTT ccgtcaacaa tttgtattgt 0 0 84.38 62.40 21.98 Both lgVII 2 5939046 5939117 Thr TGT gatgtaaggt ttctgtattt 0 0 78.52 50.14 28.38 Both lgVII 3 10326616 10326687 Asp GTC aaacaacaaa ttcttctgtt 0 0 69.46 51.11 18.35 Both lgVII 4 11164433 11164504 His GTG tcacagtaaa tttttatttt 0 0 62.38 35.43 26.95 Both lgVII 5 11531135 11531207 Glu CTC taccaacaaa tttttaactt 0 0 77.21 53.67 23.54 Both lgVII 6 11709412 11709329 Leu AAG tagaatcatc atgatggcta 11709375 11709367 25.51 16.39 9.12 Eufind lgVII 7 11408073 11408001 Phe GAA gtctcatctt tttttttaag 0 0 77.43 54.21 23.22 Both lgVII 8 10977428 10977345 Leu CAA gaagcatcac tttttctact 0 0 70.52 44.98 25.54 Both lgVII 9 10653325 10653254 Glu TTC aagtaaacat ttatttttag 0 0 72.60 50.65 21.95 Both lgVII 10 9631383 9631312 Trp CCA aaagaaaagt attcccatgt 0 0 77.63 55.47 22.16 Both lgVII 11 6564804 6564732 Arg CCG attcacaagt tttattaact 0 0 69.19 51.56 17.63 Both lgVII 12 5243168 5243088 Leu AAG taataaacat gcaacgtttt 0 0 69.68 40.32 29.36 Both lgVII 13 5237036 5236956 Leu AAG tactaaacat gcaacatttt 0 0 69.68 40.32 29.36 Both lgVII 14 5068725 5068645 Leu AAG acaacaacga aatccaattt 0 0 69.68 40.32 29.36 Both lgVII 15 4560060 4559987 Val CAC ttattaagct cctttaagtc 0 0 86.56 62.16 24.40 Both lgVII 16 4232518 4232446 Ala AGC atcaaagaaa atatattttt 0 0 68.12 43.78 24.34 Both lgVII 17 3920222 3920138 Met CAT ctaacgtaaa atccttttct 3920184 3920174 61.15 41.05 20.10 Both lgVII 18 3390155 3390073 Leu AAG attaaccatc tatgatggcc 3390118 3390113 31.26 10.15 21.11 Eufind lgVII 19 2951429 2951347 Leu TAA attcgcatca ccaccttttt 0 0 65.18 27.10 38.08 Both lgVII 20 2518636 2518563 Asp GTC tcgtttccct acaaatccaa 0 0 47.56 39.42 8.14 Both lgVII 21 2076248 2076166 Phe AAA tgtaactatt tatgatggct 2076211 2076203 27.01 20.60 6.41 Eufind lgVII 22 1627204 1627132 Ala AGC tttcaacaat agcttccctt 0 0 68.12 43.78 24.34 Both lgVII 23 1114887 1114816 Thr TGT tacccgaaaa tttttggttt 0 0 82.64 57.48 25.16 Both lgVII 24 164867 164794 Ile AAT gtgttgtaac atcagttatt 0 0 83.89 61.17 22.72 Both   lgVIII 1 1180407 1180480 Arg TCG ttgtgcataa tttttaaatt 0 0 82.11 60.83 21.28 Both lgVIII 2 1241345 1241427 Leu TAA caacgtagaa cttctttcat 0 0 65.18 27.10 38.08 Both lgVIII 3 1530826 1530899 Ile AAT actatcaact ttctattttt 0 0 83.89 61.17 22.72 Both lgVIII 4 2106150 2106233 Pseudo AGA ctgcaaccaa tcatgttgtt 0 0 36.78 35.92 0.86 Eufind lgVIII 5 2924254 2924326 Arg CCG aatcacaatt gtttcccttt 0 0 83.85 60.78 23.07 Both lgVIII 6 2926896 2926967 His GTG gtgtcatctt cattttttaa 0 0 63.70 36.75 26.95 Both lgVIII 7 3067529 3067601 Lys CTT ttaacagcaa tttgtgtgtt 0 0 84.38 62.40 21.98 Both lgVIII 8 3129472 3129544 Lys TTT attcaacgta attttgttgt 0 0 88.06 63.50 24.56 Both lgVIII 9 3490847 3490918 Pro AGG ttttcgaatt gttgctgttc 0 0 71.75 43.88 27.87 Both lgVIII 10 5441544 5441616 Lys TTT tcaaccgaac attaagttaa 0 0 88.06 63.50 24.56 Both lgVIII 11 8501913 8501994 Ser AGA agaccatcgc ttttgttttt 0 0 82.35 52.68 29.67 Both lgVIII 12 11408167 11408239 Glu CTC agaacatcta tataaccttt 0 0 77.70 54.15 23.55 Both lgVIII 13 11956952 11957024 Lys CTT acaacaacga ttttaacttt 0 0 84.38 62.40 21.98 Both lgVIII 14 13544213 13544142 Pro AGG gatcaacaaa cttctttttc 0 0 71.75 43.88 27.87 Both lgVIII 15 13119464 13119393 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both lgVIII 16 12589308 12589236 Arg ACG agtcaacaag ttattccaat 0 0 73.66 52.08 21.58 Both lgVIII 17 12589153 12589082 Lys TTT tttccatcta ctcgttgtat 0 0 84.47 59.91 24.56 Both lgVIII 18 12089891 12089818 Val AAC taacaaaggt aagttttttt 0 0 76.93 54.36 22.57 Both lgVIII 19 11749246 11749165 Ser GCT tgataaacaa cttgtttttt 0 0 79.53 46.09 33.44 Both lgVIII 20 11630028 11629947 Ser AGA taataaacaa taattttata 0 0 82.35 52.68 29.67 Both lgVIII 21 11451374 11451303 Met CAT gatacacaaa agagaaaggc 0 0 68.81 41.37 27.44 Both lgVIII 22 10894950 10894879 SeC TCA atatgtgatg atatttttcc 0 0 48.04 0.00 0.00 Eufind lgVIII 23 10042605 10042522 Tyr GTA caataaattt ctttcttttt 10042568 10042558 73.33 45.60 27.73 Both lgVIII 24 8889682 8889609 Asn GTT ctagccaacg aagttcattt 0 0 80.45 54.30 26.15 Both lgVIII 25 8692699 8692626 Val AAC aagaacagaa tcttgtataa 0 0 76.67 54.09 22.58 Both lgVIII 26 8289512 8289439 Asn GTT gtgttaagtt agtgttgatt 0 0 77.92 51.81 26.11 Both lgVIII 27 7378926 7378853 Ile AAT accaccaatt tgacttttta 0 0 83.89 61.17 22.72 Both lgVIII 28 6075250 6075179 Asp GTC ttacaacaag aatttgtttt 0 0 70.78 52.44 18.34 Both lgVIII 29 6013625 6013554 Thr CGT atcggcaaag ctggcgtgaa 0 0 82.42 59.89 22.53 Both lgVIII 30 5960572 5960499 Asn GTT gttatcaaca ttgaaaagct 0 0 77.92 51.81 26.11 Both lgVIII 31 4877094 4877023 His GTG tcagcatctc tccggttcaa 0 0 56.89 34.96 21.93 Both lgVIII 32 4575127 4575055 Val TAC caacaaatca acatatagtt 0 0 81.31 49.96 31.35 Both lgVIII 33 4466952 4466880 Lys CTT ccctcaagaa atttcttttt 0 0 84.38 62.40 21.98 Both lgVIII 34 3490126 3490055 Asp GTC gcacagcaat cttttttgta 0 0 69.46 51.11 18.35 Both lgVIII 35 3421189 3421116 Val CAC tgcagcttct ctacttttat 0 0 85.42 60.67 24.75 Both lgVIII 36 2954037 2953966 Pro AGG attcacatcc atgaatttaa 0 0 71.75 43.88 27.87 Both lgVIII 37 2718108 2718037 His GTG cttacaacct ctactacttt 0 0 62.38 35.43 26.95 Both lgVIII 38 2670163 2670092 Pro AGG atacgcaacc aaaactagtt 0 0 71.75 43.88 27.87 Both lgVIII 39 2153120 2153049 His GTG gaaacatgta ctaagcttgt 0 0 62.38 35.43 26.95 Both lgVIII 40 1671102 1671019 Tyr GTA agtctacaaa tatttctttt 1671065 1671055 76.61 48.88 27.73 Both lgVIII 41 1013583 1013510 Val AAC gtggcatcag ttgttttctt 0 0 76.67 54.09 22.58 Both   lgIX 1 26052 26124 Glu TTC gggcaaatgt gggtattacg 0 0 39.98 18.56 21.42 Both lgIX 2 1089191 1089272 Ser GCT ttccatcaac tttcgaaatt 0 0 79.53 46.09 33.44 Both lgIX 3 1168264 1168335 Gly TCC cattcaagaa ataattttta 0 0 73.14 51.13 22.01 Both lgIX 4 2135743 2135823 Leu CAA cttgcaaaat taatattgag 0 0 33.99 10.85 23.14 tRNAscan lgIX 5 2291657 2291728 Gln TTG agcaagttgt aaactctact 0 0 74.09 57.50 16.59 Both lgIX 6 3178486 3178557 Glu TTC agataaaaca tttttatttt 0 0 72.60 50.65 21.95 Both lgIX 7 3530411 3530490 Leu TAG atgaatagaa aatacttcct 0 0 68.72 40.52 28.20 Both lgIX 8 3612438 3612509 Trp CCA gagctcaggt attttaattt 0 0 76.38 53.43 22.95 Both lgIX 9 3655642 3655715 Ile AAT aatacaaggt ggatttttag 0 0 83.89 61.17 22.72 Both lgIX 10 3907929 3908001 Arg CCT tggcatctac atcctaccat 0 0 72.63 53.36 19.27 Both lgIX 11 4004472 4004544 Arg TCT ctaacaaaaa atttaattat 0 0 67.95 52.37 15.58 Both lgIX 12 5502787 5502868 Ser CGA tctctccccc gcttttgctt 0 0 39.61 26.39 13.22 Eufind lgIX 13 5594503 5594588 Met CAT gtcacaagat tgaaatgttt 5594541 5594552 62.48 42.37 20.11 Both lgIX 14 5726630 5726703 Ile TAT tcagaacaca ttctgtttaa 0 0 85.40 69.82 15.58 Both lgIX 15 5880731 5880803 Arg ACG ggcatcagat tagcctagat 0 0 75.05 53.47 21.58 Both lgIX 16 6522007 6522079 Ala TGC tgacgtccga cttgcgtccg 0 0 69.90 45.16 24.74 Both lgIX 17 6883158 6883231 Arg TCG cccatgtcag tttattttga 0 0 82.11 60.83 21.28 Both lgIX 18 7188229 7188311 Pseudo AAG aacaaccatc tatgatggcc 7188266 7188271 22.60 24.05 -1.45 Eufind lgIX 19 8252285 8252358 Val CAC ataacaagct tttgtcatga 0 0 86.07 61.32 24.75 Both lgIX 20 8591405 8591476 Gly TCC agcaaaccaa aagatttcat 0 0 73.14 51.13 22.01 Both lgIX 21 8950189 8950262 Val AAC ttagcataaa tttttataac 0 0 76.67 54.09 22.58 Both lgIX 22 10131411 10131481 Gly GCC aaaaaaaaat caagttgatt 0 0 32.00 22.84 9.16 Eufind lgIX 23 11846433 11846505 Val TAC gcaagcacaa tataaatatt 0 0 81.31 49.96 31.35 Both lgIX 24 12114226 12114297 Cys GCA catgaaaatt tgtgattttg 0 0 77.60 57.45 20.15 Both lgIX 25 10827941 10827868 Pseudo ACG gagatgaggt caaccaacta 0 0 28.23 28.78 -0.55 Eufind lgIX 26 8957885 8957814 Cys GCA ataagcacag ttttatgtat 0 0 79.11 55.29 23.82 Both lgIX 27 8658031 8657959 Lys TTT aacagcaaaa actatgactt 0 0 88.06 63.50 24.56 Both lgIX 28 7134114 7134033 Ser GCT ggacacagaa gtctgtttta 0 0 79.53 46.09 33.44 Both lgIX 29 6909866 6909795 Gly TCC caagcaacaa atgcccttcc 0 0 73.14 51.13 22.01 Both lgIX 30 6637920 6637847 Ile AAT aacacaactt taattgtaac 0 0 83.89 61.17 22.72 Both lgIX 31 6636645 6636572 Ile AAT aacataactt taaatgtaac 0 0 83.89 61.17 22.72 Both lgIX 32 6598588 6598507 Ser GCT gacagacagc catgtgtttt 0 0 77.62 43.68 33.94 Both lgIX 33 6263502 6263430 Ala TGC atttcgtaat aacatttcac 0 0 66.31 41.98 24.33 Both lgIX 34 5889663 5889592 Glu TTC cctcaacaaa ctttttattt 0 0 72.60 50.65 21.95 Both lgIX 35 5433871 5433801 Gly GCC agatcaacaa agcattttta 0 0 71.56 51.49 20.07 Both lgIX 36 5195873 5195801 Glu CTC tcgccactaa acgttttcct 0 0 79.78 56.24 23.54 Both lgIX 37 4794399 4794328 Pro TGG acacaacagt cgttaagtga 0 0 74.34 46.93 27.41 Both lgIX 38 4791142 4791071 Pro TGG cacatcaaac aaatctgtct 0 0 73.53 45.49 28.04 Both lgIX 39 4790612 4790541 Pro AGG ctcggcaatt ttcacatgta 0 0 64.76 42.47 22.29 Both lgIX 40 4789613 4789542 Pro TGG atcaagaaat aaaaattttc 0 0 73.73 45.85 27.88 Both lgIX 41 4788391 4788320 Pro TGG atcaccggtt atttttcact 0 0 73.73 45.85 27.88 Both lgIX 42 4787158 4787087 Pro TGG cactcacaaa gttagaatct 0 0 47.81 27.66 20.15 Eufind lgIX 43 4716609 4716536 Asn GTT gatcacacaa ttttgtacct 0 0 78.10 55.29 22.81 Both lgIX 44 3483673 3483600 Ile AAT gatatcaaat atcattttta 0 0 83.89 61.17 22.72 Both lgIX 45 3423012 3422939 Asn GTT gtcatcatct ttttttattt 0 0 81.33 54.81 26.52 Both lgIX 46 3311109 3311036 Val AAC agtcaaaagg tttttgctat 0 0 76.93 54.36 22.57 Both lgIX 47 2963565 2963482 Tyr GTA atcaacaaaa tatttctttt 2963528 2963518 72.69 44.96 27.73 Both lgIX 48 1247676 1247603 Asn GTT catcaacaaa ccttggatat 0 0 77.92 51.81 26.11 Both lgIX 49 1168481 1168399 Leu TAA tattcaacga gttgacatta 0 0 74.09 40.04 34.05 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgX 1 98367 98440 Thr AGT taaccggcag gagctaaccg 0 0 76.90 50.29 26.61 Both lgX 2 5985266 5985338 Lys CTT acgtcaacaa ttttaatttc 0 0 84.38 62.40 21.98 Both lgX 3 6268961 6269042 Pseudo AAG gatcatatct tataatggcc 6268997 6269005 22.56 6.97 15.59 Eufind lgX 4 6388419 6388491 Thr TGT tgttatgtga tttttttcta 0 0 72.03 49.31 22.72 Both lgX 5 10008840 10008923 Tyr GTA tgataaaaag tttttaattt 10008877 10008887 77.11 49.38 27.73 Both lgX 6 10165113 10165186 Val AAC atctcacctt atgtttcttt 0 0 76.93 54.36 22.57 Both lgX 7 11601739 11601812 Asn GTT attgcaagaa attattttag 0 0 74.69 52.29 22.40 Both lgX 8 12335015 12335086 Thr TGT attccaaatg aatttaaata 0 0 73.39 49.17 24.22 Both lgX 9 12880815 12880888 Ile AAT acttcgacat taattaagta 0 0 83.89 61.17 22.72 Both lgX 10 14534426 14534497 Asp GTC catcaacaag attttttttc 0 0 70.78 52.44 18.34 Both lgX 11 14599950 14600021 Thr CGT actagcgaag ctgatatttt 0 0 82.42 59.89 22.53 Both lgX 12 16475960 16476032 Val TAC caataataag ttttgaattt 0 0 81.31 49.96 31.35 Both lgX 13 16569079 16569151 Lys CTT tgatcaggaa catggttttt 0 0 84.38 62.40 21.98 Both lgX 14 17352907 17352978 Asp GTC tctcaagaaa catctttttt 0 0 70.78 52.44 18.34 Both lgX 15 17466042 17466115 Pseudo CAC attgtcggtt tacttatttc 0 0 27.47 39.48 -12.01 Eufind lgX 16 18322129 18322200 His GTG ttgttatcta cttaaataca 0 0 62.38 35.43 26.95 Both lgX 17 18382467 18382538 Pro AGG cctcacaaga agttttattg 0 0 71.75 43.88 27.87 Both lgX 18 18845497 18845568 Pro AGG aaggccagaa ttagttcttt 0 0 71.75 43.88 27.87 Both lgX 19 18905308 18905379 His GTG gagtaatcga ctaaactttt 0 0 62.38 35.43 26.95 Both lgX 20 19430689 19430772 Tyr GTA taacaataaa atgtttttgc 19430726 19430736 77.11 49.38 27.73 Both lgX 21 19442350 19442422 Lys CTT agcataaaaa tttgtttgtt 0 0 84.38 62.40 21.98 Both lgX 22 19501567 19501639 Lys TTT cattcaagat gtgatatgat 0 0 88.06 63.50 24.56 Both lgX 23 21026944 21027017 Arg TCG accttcgaag gtttcaagtt 0 0 82.11 60.83 21.28 Both lgX 24 20205861 20205789 Phe GAA gaacattaaa ttttaatcat 0 0 35.89 24.76 11.13 Both lgX 25 19548551 19548478 Ile AAT aacatgaatt tgattctgtt 0 0 83.89 61.17 22.72 Both lgX 26 18975321 18975240 Ser AGA aagaaaacaa tattttttaa 0 0 78.81 49.25 29.56 Both lgX 27 18086987 18086915 Arg CCG aatctcaagt cattctttcc 0 0 58.09 51.55 6.54 Eufind lgX 28 18085014 18084943 His GTG cagacagctt gtcataaact 0 0 62.38 35.43 26.95 Both lgX 29 17351041 17350970 Pro AGG ttatcaaaat catcgtcgaa 0 0 71.75 43.88 27.87 Both lgX 30 15352635 15352563 Lys TTT ttacagaaat ttttgctgat 0 0 88.06 63.50 24.56 Both lgX 31 11389289 11389208 Ser AGA tcatcattaa cgttattatc 0 0 82.35 52.68 29.67 Both lgX 32 6816346 6816274 Arg ACG tagcacggag tttattgtgg 0 0 73.66 52.08 21.58 Both lgX 33 6176333 6176260 Val AAC gagcaaacgc aataaaatgg 0 0 76.67 54.09 22.58 Both lgX 34 5478825 5478744 Ser AGA cagcaattag atttttgaat 0 0 82.83 53.16 29.67 Both   lgXI 1 36020 36091 Trp CCA tgttatccag atcccctccc 0 0 77.63 55.47 22.16 Both lgXI 2 37491 37562 Trp CCA aactatccag attccctcgc 0 0 77.63 55.47 22.16 Both lgXI 3 263134 263205 His GTG tcgcaacaaa cgtatagtta 0 0 63.70 36.75 26.95 Both lgXI 4 610614 610696 Leu AAG tttaaccatc atgatcgcta 610651 610659 23.26 17.02 6.24 Eufind lgXI 5 2220060 2220133 Val CAC aagtcagatt attgttttcg 0 0 86.07 61.32 24.75 Both lgXI 6 7591906 7591979 Ile TAT gcagcaacaa tctctctctt 0 0 85.40 69.82 15.58 Both lgXI 7 9287141 9287211 Gly GCC aatcaaccca tcagcatgat 0 0 71.56 51.49 20.07 Both lgXI 8 11289783 11289855 Phe GAA gaaggcaaaa ttttatattc 0 0 77.43 54.21 23.22 Both lgXI 9 12042010 12042092 Leu AAG tttaactata ttatatgatg 12042047 12042055 32.01 24.37 7.64 Eufind lgXI 10 12971176 12971248 Ala AGC taaacatcaa ttttctcttt 0 0 68.12 43.78 24.34 Both lgXI 11 13211377 13211447 Gly CCC gagctcgcaa gttgtttttc 0 0 68.61 36.02 32.59 Both lgXI 12 13798334 13798262 Lys TTT tttcagacaa aggcaattct 0 0 88.06 63.50 24.56 Both lgXI 13 13346876 13346805 Met CAT gtattcaaca attgagtagc 0 0 67.87 40.24 27.63 Both lgXI 14 13341806 13341735 Met CAT gtattcaaca gttgagtagc 0 0 67.87 40.24 27.63 Both lgXI 15 13334974 13334903 Met CAT gtattcaaca attgagtagc 0 0 67.87 40.24 27.63 Both lgXI 16 12069895 12069823 Phe GAA aaaacaagag ttatttttta 0 0 77.43 54.21 23.22 Both lgXI 17 9546042 9545969 Ile TAT atactataat ttagtattag 0 0 85.40 69.82 15.58 Both lgXI 18 8823071 8822999 Glu CTC agtccagcaa tcgttttttt 0 0 77.70 54.15 23.55 Both lgXI 19 8809430 8809358 Glu CTC agtccagcaa tcttgatttt 0 0 75.25 51.70 23.55 Both lgXI 20 8635419 8635346 Ile AAT tgtcagtcgt gtaatttata 0 0 83.89 61.17 22.72 Both lgXI 21 3131040 3130969 Asp GTC ttacagctac ctcttatttt 0 0 70.78 52.44 18.34 Both lgXI 22 3130435 3130364 Asp GTC tagcaactaa ctcttatttt 0 0 69.46 51.11 18.35 Both   lgXII 1 430368 430448 Leu AAG ctaaccatct tatgatggcc 430403 430412 20.67 13.49 7.18 Eufind lgXII 2 1877359 1877431 Ala CGC atggccgtac agtttttcat 0 0 65.14 41.26 23.88 Both lgXII 3 2205964 2206037 Ile AAT gatgtcaact tgtcttcatt 0 0 83.89 61.17 22.72 Both lgXII 4 2554466 2554545 Leu TAG aagcataaaa atattcttta 0 0 68.72 40.52 28.20 Both lgXII 5 10844320 10844391 Thr TGT ttaagtggaa tcttttttac 0 0 82.64 57.48 25.16 Both lgXII 6 11420608 11420688 Leu AAG gaaacggcta ttatatatat 0 0 68.97 39.39 29.58 Both lgXII 7 11501252 11501333 Ser TGA accaacaagc tttttccgat 0 0 80.82 48.39 32.43 Both lgXII 8 11597702 11597772 Gly GCC agttaaagag ttcccgagct 0 0 71.56 51.49 20.07 Both lgXII 9 11599859 11599929 Gly GCC tagtcaacaa ttcccaagct 0 0 71.56 51.49 20.07 Both lgXII 10 11830307 11830378 Gln TTG ctaacaaagt cttttttgct 0 0 74.09 57.50 16.59 Both lgXII 11 11892549 11892620 Met CAT aagtcaacgg cttttgtttt 0 0 69.15 42.39 26.76 Both lgXII 12 12350724 12350805 Ser AGA gtacaataag ttctttttcc 0 0 81.73 51.60 30.13 Both lgXII 13 12636693 12636776 Leu CAA actacaaaag tatgacgttt 0 0 66.13 41.95 24.18 Both lgXII 14 12928967 12929040 Val AAC ttaagcatct tatttgctct 0 0 76.67 54.09 22.58 Both lgXII 15 12841728 12841657 Asp GTC tgccagcaat tcttcttttt 0 0 69.46 51.11 18.35 Both lgXII 16 12356623 12356553 Gly CCC agatcaataa ttttccttta 0 0 68.61 36.02 32.59 Both lgXII 17 11161309 11161238 Lys TTT taatagaaaa ttctagtttt 0 0 74.80 57.47 17.33 Both lgXII 18 11159902 11159831 Lys TTT taatagaaaa ttctagtttt 0 0 74.80 57.47 17.33 Both lgXII 19 10961661 10961589 Arg CCT gtaacaacta tacttccttt 0 0 70.50 49.60 20.90 Both lgXII 20 8808350 8808270 Pseudo AAG taaccatcta tatgatggcc 8808315 8808310 20.81 18.34 2.47 Eufind lgXII 21 5851433 5851362 Thr CGT ataaacaact aattgttttg 0 0 84.43 63.80 20.63 Both lgXII 22 4637314 4637234 Leu CAG aatcagcaat atatgttttt 0 0 66.12 37.42 28.70 Both lgXII 23 3041720 3041636 Met CAT ggaacaacac ttatatattt 3041682 3041672 61.71 41.61 20.10 Both lgXII 24 2142186 2142116 Gly CCC atgcaaacag ttgcctttgt 0 0 68.61 36.02 32.59 Both lgXII 25 1990974 1990904 Gly GCC gtatcaacaa gagaagagca 0 0 71.56 51.49 20.07 Both lgXII 26 971817 971746 Met CAT tgttcaacaa aaaagagtgg 0 0 67.87 40.24 27.63 Both lgXII 27 383960 383889 Asp GTC tatcaataag tcttttattt 0 0 69.46 51.11 18.35 Both lgXII 28 49665 49592 Asn GTT ccatcaatca atttcttttt 0 0 81.83 55.73 26.10 Both   lgXIII 1 721112 721184 Ala AGC tatcgtcaaa ttttctccca 0 0 68.12 43.78 24.34 Both lgXIII 2 728548 728619 Pro CGG gaatcaaaga tggtattaat 0 0 74.11 46.34 27.77 Both lgXIII 3 1113137 1113208 Glu TTC gaatcaacat ctttttattc 0 0 72.60 50.65 21.95 Both lgXIII 4 1928550 1928622 Ala TGC tacccgaaat tcttatattt 0 0 69.90 45.16 24.74 Both lgXIII 5 1951787 1951858 Pro AGG tgacaggaat cttctttttg 0 0 71.75 43.88 27.87 Both lgXIII 6 2361441 2361522 Pseudo AAA atatacgtct tatgatggcc 2361477 2361482 20.11 16.41 3.70 Eufind lgXIII 7 2429828 2429900 Glu CTC ataagcagaa cattttgttt 0 0 79.78 56.24 23.54 Both lgXIII 8 3468110 3468182 Ala TGC agttgcatca tatttgtttc 0 0 69.90 45.16 24.74 Both lgXIII 9 7474181 7474253 Ala AGC ggagtaagaa ttttgtttta 0 0 65.95 43.62 22.33 Both lgXIII 10 8083957 8084028 Met CAT cattttaaca gaagagtagc 0 0 67.87 40.24 27.63 Both lgXIII 11 12433421 12433351 Gly GCC gaatcagcaa ataacgagcg 0 0 71.56 51.49 20.07 Both lgXIII 12 12122410 12122329 Ser TGA attcatgagc ttttgccgtt 0 0 81.08 48.89 32.19 Both lgXIII 13 11712579 11712498 Ser AGA ctgcaacaag cttttccttt 0 0 81.33 50.84 30.49 Both lgXIII 14 11656193 11656122 Gln CTG taacagaaat tatatgtttt 0 0 71.93 52.34 19.59 Both lgXIII 15 11605552 11605460 Tyr GTA tgtatagaaa aataatgttt 11605515 11605496 74.78 47.05 27.73 Both lgXIII 16 11429657 11429585 Val TAC tgatcgcaaa gtttataatg 0 0 81.31 49.96 31.35 Both lgXIII 17 8078929 8078858 Met CAT agaaacaaga gaagagtagc 0 0 67.87 40.24 27.63 Both lgXIII 18 2724340 2724270 Gly GCC tgtcaacaag aaagctattg 0 0 65.03 50.40 14.63 Eufind lgXIII 19 1111190 1111119 Cys GCA tagcacaaac tttaacattt 0 0 78.18 58.76 19.42 Both lgXIII 20 780745 780672 Thr AGT agatcaacca acacgaccat 0 0 76.90 50.29 26.61 Both lgXIII 21 372059 371987 Phe GAA gagcgtgaag ttcttcttct 0 0 77.43 54.21 23.22 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgXIV 1 603578 603649 Pro TGG cttcacaaac gttcttttga 0 0 73.73 45.85 27.88 Both lgXIV 2 752758 752831 Thr AGT tccaacaaca ataattcgat 0 0 76.90 50.29 26.61 Both lgXIV 3 2079659 2079739 Leu AAG atcaaaagat tttcttcttt 0 0 69.68 40.32 29.36 Both lgXIV 4 2214612 2214682 Cys GCA atgcggtggc cggggagtgg 0 0 40.08 25.64 14.44 Both lgXIV 5 3512774 3512846 Ala CGC agagtagatt tttgggtttt 0 0 64.52 40.18 24.34 Both lgXIV 6 4879462 4879534 Ala TGC aaggacaaac cataccactt 0 0 66.31 41.98 24.33 Both lgXIV 7 5267615 5267681 His GTG ttacatcgaa ttttacctct 0 0 34.05 12.93 21.12 Eufind lgXIV 8 5954153 5954223 Gly CCC aacagcagaa tttatataca 0 0 68.61 36.02 32.59 Both lgXIV 9 6240553 6240624 Pro TGG taaccgaaat acctcgtttt 0 0 73.73 45.85 27.88 Both lgXIV 10 6357553 6357624 Pro TGG taaccgaaat acctcgtttt 0 0 73.73 45.85 27.88 Both lgXIV 11 10673918 10673846 Arg TCT gacatcaagt ctcttttttt 0 0 64.86 47.91 16.95 Both lgXIV 12 8923612 8923539 Ile AAT ccatcggatt tttatattgt 0 0 83.89 61.17 22.72 Both lgXIV 13 6357893 6357822 Pro AGG acaacaaaca ttatcctttt 0 0 71.75 43.88 27.87 Both lgXIV 14 6240893 6240822 Pro AGG gacaacaaaa ttatcctttt 0 0 71.75 43.88 27.87 Both lgXIV 15 4970256 4970184 Phe GAA tgaccagata tttatatttt 0 0 77.43 54.21 23.22 Both lgXIV 16 4869579 4869507 Phe GAA cagacaacta tgttcttcta 0 0 77.43 54.21 23.22 Both lgXIV 17 4260420 4260349 Cys GCA ctactaatac ttgttttatg 0 0 78.18 58.76 19.42 Both lgXIV 18 3730855 3730782 Val AAC ttgacaaagc ttttggtttt 0 0 76.67 54.09 22.58 Both lgXIV 19 3660531 3660461 Gly CCC acaccaagaa ttgctgtttt 0 0 68.61 36.02 32.59 Both lgXIV 20 2342214 2342141 Val CAC tcatcaaatt tctttttcct 0 0 86.07 61.32 24.75 Both lgXIV 21 1410886 1410814 Lys CTT accctcacaa ctctctgtct 0 0 81.60 60.95 20.65 Both lgXIV 22 1271459 1271387 Glu CTC tgtcaaccaa attttgagtt 0 0 79.78 56.24 23.54 Both lgXIV 23 204529 204456 Thr AGT gccagcaaat tttcgatgat 0 0 74.28 46.95 27.33 Both   lgXV 1 293778 293863 Met CAT gtcaaaaggt taaaatcatt 293816 293827 61.84 41.73 20.11 Both lgXV 2 464026 464105 Leu TAG actcacaaat cttttcacat 0 0 68.72 40.52 28.20 Both lgXV 3 694800 694870 Gly CCC aatctaaaac tttttattcc 0 0 68.61 36.02 32.59 Both lgXV 4 3065499 3065579 Leu CAG aaacaataat atatattttt 0 0 68.57 39.87 28.70 Both lgXV 5 3469836 3469917 Leu AAG ttaattattt tatgatggcc 3469872 3469877 21.71 13.48 8.23 Eufind lgXV 6 5541678 5541757 Leu TAG aacaacaagt atgtttcgat 0 0 68.72 40.52 28.20 Both lgXV 7 5958840 5958911 Ile GAT tactcaaatt tggttattac 0 0 54.13 36.39 17.74 Both lgXV 8 6177389 6177460 Gly TCC agcaacaatc attttgcaga 0 0 74.33 49.53 24.80 Both lgXV 9 7254461 7254542 Ser TGA aacagcaatc tttttccaat 0 0 80.82 48.39 32.43 Both lgXV 10 7276710 7276780 Gly GCC atttcaacaa ttcacaagct 0 0 71.56 51.49 20.07 Both lgXV 11 7295489 7295559 Gly GCC ttatcaacaa ttcacaagct 0 0 71.56 51.49 20.07 Both lgXV 12 7523069 7523140 Gln TTG ccaacaagtt ctttttaata 0 0 74.09 57.50 16.59 Both lgXV 13 7641479 7641550 Met CAT gcaacaacaa ttttttattt 0 0 69.15 42.39 26.76 Both lgXV 14 8433367 8433438 Pro TGG ttcgtaaatt aacttctaca 0 0 69.35 42.46 26.89 Both lgXV 15 10304650 10304721 Asp GTC tctcaacaag tcattatttt 0 0 69.46 51.11 18.35 Both lgXV 16 8700071 8699999 Lys TTT gaaatgtaaa agactttatt 0 0 88.06 63.50 24.56 Both lgXV 17 8581184 8581113 Pro TGG ttcgtaaact atcttcaaca 0 0 73.73 45.85 27.88 Both lgXV 18 8576897 8576826 Pro TGG ttcgtaaact atcttcaaca 0 0 73.73 45.85 27.88 Both lgXV 19 6622029 6621957 Arg CCT gtatcaagaa tataaacctt 0 0 70.50 49.60 20.90 Both lgXV 20 5753549 5753478 Pro TGG ttaagcaatt ggcttttttt 0 0 73.73 45.85 27.88 Both lgXV 21 5308012 5307929 Leu AAG cgcaatcatc atgatggcca 5307975 5307970 24.52 11.51 13.01 Eufind lgXV 22 4430496 4430423 Asn GTT agtgatcaca ctttcttgtt 0 0 77.92 51.81 26.11 Both lgXV 23 1411244 1411157 Ser GCT ttctcaattg gttccgttga 0 0 38.84 19.58 19.26 Both lgXV 24 947303 947231 Ala CGC caacatgtgc ccttttaggt 0 0 65.14 41.26 23.88 Both lgXV 25 852100 852029 Gln CTG atagcaagat tctttttttt 0 0 69.79 49.85 19.94 Both   lgXVI 1 61122 61193 Thr CGT tgagcatctt ttgcttttaa 0 0 82.42 59.89 22.53 Both lgXVI 2 266738 266818 Leu CAG ggcaacaaag tttctttttt 0 0 68.57 39.87 28.70 Both lgXVI 3 266901 266981 Leu CAG ggcaacaaag tttatgtttt 0 0 68.57 39.87 28.70 Both lgXVI 4 2088862 2088944 Pseudo AAG gaaaaccatc tatgatgacc 2088899 2088907 29.61 25.42 4.19 Eufind lgXVI 5 2851412 2851484 Ala TGC tccatcgaac tttttttttt 0 0 66.31 41.98 24.33 Both lgXVI 6 3705804 3705876 Ala AGC gtagcggcaa ctctctctac 0 0 68.12 43.78 24.34 Both lgXVI 7 5801266 5801337 Pro CGG caaatgtcgt tctttgatat 0 0 74.11 46.34 27.77 Both lgXVI 8 8937243 8937325 Leu AAG gttaaccatc tattgatggc 8937280 8937285 23.98 16.81 7.17 Eufind lgXVI 9 9593099 9593170 Pro AGG agaacacgaa ctgaaccaca 0 0 71.75 43.88 27.87 Both lgXVI 10 10231503 10231575 Glu CTC tcaacatcat actcttttgg 0 0 79.78 56.24 23.54 Both lgXVI 11 11257940 11258012 Ala AGC ttaagtaaat ttgtatttta 0 0 68.12 43.78 24.34 Both lgXVI 12 11275201 11275273 Ala AGC ttgagccaaa ttatggattt 0 0 68.12 43.78 24.34 Both lgXVI 13 11545045 11545118 Ile AAT ctcagcaact ttttatattt 0 0 76.24 55.09 21.15 Both lgXVI 14 11760793 11760863 Gly GCC gtaacaagaa tttatatctg 0 0 71.56 51.49 20.07 Both lgXVI 15 11794134 11794214 Leu AAG gttaacaaga aatcattttt 0 0 69.68 40.32 29.36 Both lgXVI 16 12329855 12329938 Tyr GTA tctcaacaaa tttttatttt 12329892 12329902 76.47 48.74 27.73 Both lgXVI 17 11891171 11891099 Met CAT tacccactaa tgccaatgtg 0 0 48.97 28.66 20.31 Eufind lgXVI 18 10926220 10926149 Lys TTT catacagcca tcctttgtca 0 0 84.47 59.91 24.56 Both lgXVI 19 6670573 6670502 Ile TAT gacttgttca cccttgatat 0 0 34.51 12.81 21.70 Eufind lgXVI 20 4450598 4450528 Ser GCT gaaaaaaaat cgctcaagtc 0 0 24.60 10.89 13.71 Eufind lgXVI 21 4003599 4003528 Gly TCC ccacaagaaa tttttttctg 0 0 73.14 51.13 22.01 Both lgXVI 22 3106068 3105997 Cys GCA aatccaaaaa tgcaattgtt 0 0 77.60 57.45 20.15 Both lgXVI 23 1267648 1267577 Thr TGT ttaatagtta atctaaaggg 0 0 82.64 57.48 25.16 Both lgXVI 24 77935 77862 Ile AAT tccagcatct attttaacat 0 0 83.89 61.17 22.72 Both lgXVI 25 21467 21395 Phe GAA agccatcaca cttacctttt 0 0 77.43 54.21 23.22 Both   lgXVII 1 240712 240785 Ile AAT atgtcaacaa tttgtttttt 0 0 83.89 61.17 22.72 Both lgXVII 2 1200936 1201016 Leu AAG ggcagccatg tgtttttttt 0 0 69.68 40.32 29.36 Both lgXVII 3 1794976 1795057 Ser GCT gaacaacaaa aaatgatttt 0 0 79.53 46.09 33.44 Both lgXVII 4 2567581 2567662 Pseudo AAG cataaccttc tatgatggtc 2567618 2567623 23.27 21.23 2.04 Eufind lgXVII 5 3603416 3603488 Ala AGC aattggtggc tttcttctgg 0 0 68.12 43.78 24.34 Both lgXVII 6 4376098 4376015 Leu AAG cttaaccatc atgatggcca 4376061 4376054 23.06 15.40 7.66 Eufind   lgXVIII 1 4689000 4689072 Phe GAA cgaagcaaaa ttttattttt 0 0 77.43 54.21 23.22 Both lgXVIII 2 5198709 5198780 Gly TCC tacaaaagca cttttgcatt 0 0 73.14 51.13 22.01 Both lgXVIII 3 5484634 5484705 Gly TCC acatcagcag cttttgcatt 0 0 68.39 46.38 22.01 Both lgXVIII 4 9393666 9393737 Glu TTC aaacaagtct ttgttttatg 0 0 72.60 50.65 21.95 Both lgXVIII 5 9816188 9816270 Leu AAG gataaccata tatgataacc 9816225 9816230 21.56 10.43 11.13 Eufind lgXVIII 6 13373569 13373496 Asn GTT gaatcaataa agttgacttt 0 0 81.83 55.73 26.10 Both lgXVIII 7 12337294 12337222 Ala TGC tttacaaaat ttatttttta 0 0 69.90 45.16 24.74 Both lgXVIII 8 11882717 11882646 Glu TTC taacaagtat ttccttttgg 0 0 72.60 50.65 21.95 Both lgXVIII 9 10993465 10993392 Thr AGT taacagataa cataacaaat 0 0 76.02 48.69 27.33 Both lgXVIII 10 8582418 8582346 Lys CTT acatcaaaaa ctttctctag 0 0 84.38 62.40 21.98 Both lgXVIII 11 8090053 8089973 Leu AAG acgctgtctt aagagcataa 0 0 69.68 40.32 29.36 Both lgXVIII 12 6434067 6433986 Ser TGA agaacaagaa ttttttgttt 0 0 78.27 46.08 32.19 Both lgXVIII 13 6433688 6433607 Ser TGA aaataaaaca tttttctatc 0 0 80.82 48.39 32.43 Both lgXVIII 14 5515445 5515373 Arg CCT gtatgaacaa ataaaagtta 0 0 74.13 53.22 20.91 Both lgXVIII 15 5509000 5508928 Arg CCT gtaagaacat ataaaagtta 0 0 74.13 53.22 20.91 Both lgXVIII 16 4428244 4428163 Ser CGA tcatctaaac cctcttttct 0 0 81.28 49.43 31.85 Both   lgXIX 1 114476 114547 Gly TCC atagacaact actatctatt 0 0 73.14 51.13 22.01 Both lgXIX 2 120027 120098 Gly TCC atagacaact actatctatt 0 0 73.14 51.13 22.01 Both lgXIX 3 11126934 11126864 Gly GCC gaatcaacaa aatcctgagc 0 0 71.56 51.49 20.07 Both lgXIX 4 9976926 9976844 Leu AAG actaaccatc tattgataac 9976889 9976881 20.58 12.01 8.57 Eufind lgXIX 5 2527444 2527372 Ala TGC atttcatgta attgttttta 0 0 69.90 45.16 24.74 Both lgXIX 6 2257824 2257753 Lys CTT gaacgctata ttctatgttt 0 0 79.91 59.31 20.60 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold28 1 2451377 2451465 Tyr GTA aaagcatgtt ttttttcttt 2451414 2451429 77.68 49.95 27.73 Both scaffold28 2 3550254 3550171 Tyr GTA caacaagcat atttattttt 3550217 3550207 77.11 49.38 27.73 Both scaffold28 3 3088962 3088880 Leu TAA gaccacgtta tttttcttta 0 0 26.52 14.33 12.19 Both scaffold28 4 1516964 1516893 Sup TTA tgactctgta cctctgaaat 0 0 32.75 10.70 22.05 Eufind scaffold28 5 695004 694922 Phe AAA aagaaccatc tatgatgact 694967 694961 24.43 12.08 12.35 Eufind scaffold28 6 359043 358962 Ser GCT tagcacaaac gttaaatttt 0 0 77.62 43.68 33.94 Both   scaffold29 1 1181358 1181441 Tyr GTA ttttcttcct ataattcact 0 0 39.72 22.56 17.16 Eufind scaffold29 2 3126027 3126098 Gln CTG tagcaagggt atacatgcat 0 0 70.59 50.44 20.15 Both scaffold29 3 2868108 2868037 Pro TGG ataacaagat tcactttaaa 0 0 73.73 45.85 27.88 Both scaffold29 4 2691519 2691447 Ala AGC gagcgtcagt tttaatttat 0 0 68.12 43.78 24.34 Both scaffold29 5 2134392 2134308 Met CAT atgccatgat tttcttttct 2134354 2134344 61.15 41.05 20.10 Both   scaffold40 1 682442 682513 Pseudo CCG gcttaaacaa aatcccatgg 0 0 46.12 42.83 3.29 Eufind scaffold40 2 2066554 2066482 Arg CCT gagcatcgaa tcataatcat 0 0 72.14 52.52 19.62 Both scaffold40 3 855796 855715 Leu AAG tgaaccatct tatgatggtc 855760 855755 23.26 16.36 6.90 Eufind scaffold40 4 837427 837346 Leu AAG tgaaccatct tatgatggtc 837391 837386 23.26 16.36 6.90 Eufind   scaffold41 1 1156111 1156040 Glu TTC tcacaataat ttcattttta 0 0 72.60 50.65 21.95 Both scaffold41 2 315475 315393 Leu AAG tttaattatc tatgatggtc 315438 315430 21.93 11.29 10.64 Eufind   scaffold44 1 188114 188043 Pro TGG acaacaagaa tatgcctttt 0 0 74.34 46.93 27.41 Both   scaffold57 1 1075081 1075153 Phe GAA ttcacatctt attttcatcc 0 0 77.43 54.21 23.22 Both scaffold57 2 1970844 1970773 Asp GTC taccagcaaa ttagtatttt 0 0 70.78 52.44 18.34 Both scaffold57 3 1639955 1639884 Glu TTC aaacaaaagt tgttttttat 0 0 72.60 50.65 21.95 Both scaffold57 4 1568479 1568395 Pseudo ??? gatgtccaca attaattacc 0 0 20.02 -3.86 23.88 Eufind scaffold57 5 1225716 1225645 His GTG acagcataaa aaatattttt 0 0 63.70 36.75 26.95 Both scaffold57 6 1071348 1071278 Gly GCC caagcatcag aaaatcgtgt 0 0 71.56 51.49 20.07 Both scaffold57 7 996598 996526 Glu CTC gagaaacaaa tgattaccgt 0 0 79.78 56.24 23.54 Both scaffold57 8 565417 565344 Ile AAT cagatgtatt ttttattttc 0 0 79.79 57.07 22.72 Both   scaffold64 1 737483 737412 Thr TGT gtatacaaga ttttctttat 0 0 81.19 54.96 26.23 Both scaffold64 2 24812 24729 Pseudo AAG tataatcatc atgatgacca 24775 24767 24.72 9.91 14.81 Eufind   scaffold66 1 232787 232860 Asn GTT tatcaacacg acagaatcta 0 0 77.92 51.81 26.11 Both scaffold66 2 303782 303864 Leu TAA gctaaatgtc atttggtgat 0 0 69.55 35.50 34.05 Both scaffold66 3 982329 982258 Gln CTG tgtcaacagc ttttgtcaat 0 0 71.93 52.34 19.59 Both scaffold66 4 388798 388717 Ser GCT accgtcaaca tttatgtttt 0 0 79.53 46.09 33.44 Both scaffold66 5 304012 303941 Gly TCC tactcaacga gtcttcttaa 0 0 70.48 48.46 22.02 Both scaffold66 6 259244 259164 Leu AAG catcaacaat ttattattat 0 0 69.68 40.32 29.36 Both   scaffold70 1 499794 499864 Gly GCC taccagcaag attgtttttc 0 0 71.56 51.49 20.07 Both scaffold70 2 1070584 1070655 Pro TGG ttgcccgaga cttttttcct 0 0 73.73 45.85 27.88 Both scaffold70 3 1368875 1368956 Ser TGA ttacaaatca attctttttt 0 0 80.82 48.39 32.43 Both scaffold70 4 1127161 1127089 Pseudo TGC gaaatcaatc ttctgttttt 0 0 34.67 30.79 3.88 Eufind scaffold70 5 1114764 1114693 Pseudo TGC actaactgat tttactcgtt 0 0 28.86 26.40 2.46 Eufind scaffold70 6 1085247 1085176 Pseudo TGC actaactgat tttactcgtt 0 0 28.86 26.40 2.46 Eufind scaffold70 7 1072004 1071933 Pro AGG cactaacaac ttttattgat 0 0 71.75 43.88 27.87 Both   scaffold77 1 596467 596394 Thr AGT tgctcaacaa aatctgtctt 0 0 76.90 50.29 26.61 Both   scaffold86 1 847997 847926 Trp CCA aagaacaagt tttcccacag 0 0 76.38 53.43 22.95 Both scaffold86 2 844086 844015 Trp CCA atcaacaagt tttcccccag 0 0 76.38 53.43 22.95 Both scaffold86 3 821296 821225 Trp CCA aagaacaagt tttcccccag 0 0 76.38 53.43 22.95 Both scaffold86 4 587185 587112 Val AAC cgaacatgaa ttattttgtt 0 0 76.67 54.09 22.58 Both   scaffold87 1 149879 149949 Pseudo GCA gacaaatctt tgtgctctct 0 0 30.02 29.54 0.48 Eufind scaffold87 2 948222 948140 Pseudo AAG cctaaccatc tatgatggtc 948185 948180 20.57 16.91 3.66 Eufind   scaffold88 1 135864 135937 Val AAC gtctataaga attgttttat 0 0 76.93 54.36 22.57 Both scaffold88 2 597316 597245 Asp GTC aagcaaggaa ttatgttttc 0 0 70.78 52.44 18.34 Both   scaffold107 1 800966 801048 Pseudo AAG ttaaaccatc tgttgatggc 801003 801011 20.92 16.15 4.77 Eufind   scaffold118 1 80273 80357 Met CAT attatcaaaa ttctttttag 80311 80321 61.15 41.05 20.10 Both   scaffold120 1 548393 548464 Gln CTG catcaccata tgattttttc 0 0 69.12 49.54 19.58 Both scaffold120 2 603750 603842 Tyr GTA cggatagctt taattccttt 603787 603806 72.29 44.56 27.73 Both scaffold120 3 606457 606549 Tyr GTA tggatagctt aaaatccttt 606494 606513 72.93 45.20 27.73 Both scaffold120 4 681074 681146 Val TAC aggacatgaa ctatacaatt 0 0 76.93 46.57 30.36 Both   scaffold121 1 210068 210140 Arg TCT agcaaaacta aacttcaatt 0 0 66.30 50.72 15.58 Both   scaffold124 1 214790 214862 Val TAC tagcagagac ctccttttaa 0 0 81.31 49.96 31.35 Both scaffold124 2 306372 306454 Leu TAA gaaacaaaca tttttattta 0 0 66.37 29.51 36.86 Both scaffold124 3 804474 804545 Asp GTC gatcagcaag cttgccttct 0 0 70.78 52.44 18.34 Both scaffold124 4 807576 807647 Asp GTC taatcagcaa tagaactttt 0 0 70.78 52.44 18.34 Both   scaffold127 1 105457 105529 Lys CTT aagacaacaa cattcttttt 0 0 84.38 62.40 21.98 Both   scaffold130 1 60292 60371 Leu TAG aacatcaagt attttcaatc 0 0 68.72 40.52 28.20 Both scaffold130 2 244276 244347 Trp CCA agtcacgagt atctgccttt 0 0 77.63 55.47 22.16 Both scaffold130 3 665500 665572 Arg CCT tatcagctaa gtcctctttt 0 0 72.63 53.36 19.27 Both scaffold130 4 764990 765062 Arg TCT ttaacaagaa agctttttga 0 0 66.30 50.72 15.58 Both scaffold130 5 244484 244411 Val CAC aaggtgccat cttcctttta 0 0 86.07 61.32 24.75 Both   scaffold131 1 272759 272687 Phe GAA caacaaacag tttctctctt 0 0 77.43 54.21 23.22 Both   scaffold132 1 714730 714660 Gly CCC tggacaagca agttttggtg 0 0 68.61 36.02 32.59 Both   scaffold133 1 277388 277459 Cys GCA tagtacaatt tttacagttt 0 0 78.18 58.76 19.42 Both scaffold133 2 541346 541419 Thr AGT cattcaacaa ctaagatctt 0 0 76.90 50.29 26.61 Both scaffold133 3 629701 629629 Ala AGC tttccagaat tcctttgttt 0 0 68.12 43.78 24.34 Both scaffold133 4 619829 619758 Pro CGG agagcatgtt ttttttttta 0 0 69.81 45.03 24.78 Both scaffold133 5 274199 274128 Glu TTC ttcccaatca ctttttttcc 0 0 72.60 50.65 21.95 Both   scaffold134 1 509565 509637 Glu CTC ctcacagcaa agttttagtt 0 0 79.78 56.24 23.54 Both scaffold134 2 644093 644022 Gln TTG tcagcatcct tatgtaccaa 0 0 74.09 57.50 16.59 Both   scaffold137 1 453155 453073 Pseudo AAG agtaaccatc tatgatggcc 453118 453110 22.40 24.52 -2.12 Eufind   scaffold142 1 222421 222493 Phe GAA ttcagtggct cttttttctc 0 0 77.43 54.21 23.22 Both scaffold142 2 222030 221958 Phe GAA ccctgtggct cttctttttc 0 0 77.43 54.21 23.22 Both   scaffold148 1 49313 49395 Leu AAG agaaaccatc tataatagcc 49350 49358 29.69 13.06 16.63 Eufind scaffold148 2 497836 497917 Ser GCT catcattgac tatttgtttt 0 0 79.53 46.09 33.44 Both   scaffold150 1 184222 184295 Val AAC tgatcacgaa taaactagaa 0 0 75.28 52.70 22.58 Both   scaffold152 1 182125 182196 Cys GCA tcttcaaatg ctaaatattt 0 0 77.60 57.45 20.15 Both scaffold152 2 532730 532803 Arg TCG ataacatgtt cgtgagatta 0 0 82.11 60.83 21.28 Both   scaffold155 1 244425 244352 Ile AAT gaatgcaaat ccaattaatt 0 0 83.89 61.17 22.72 Both   scaffold156 1 331424 331495 Lys CTT gaacgctata ttctatgttt 0 0 79.91 59.31 20.60 Both   scaffold158 1 124784 124703 Ser GCT ttgcatcaac tctcattttt 0 0 77.62 43.68 33.94 Both   scaffold163 1 212500 212572 Val TAC aatcattcag ttgactctac 0 0 81.31 49.96 31.35 Both scaffold163 2 388041 388114 Arg TCG gcacaatgag gttaaactac 0 0 81.86 60.33 21.53 Both scaffold163 3 408785 408858 Arg TCG gcacaatgag gttaaactac 0 0 81.86 60.33 21.53 Both   scaffold164 1 179658 179731 Ile TAT gtaactgaac acacaacata 0 0 85.40 69.82 15.58 Both   scaffold168 1 343316 343235 Leu AAG ggaaccatct tatgatggcc 343280 343275 21.26 13.07 8.19 Eufind   scaffold169 1 257384 257455 Asn GTT aggaagttct attttgagtt 0 0 60.64 48.67 11.97 Eufind scaffold169 2 258310 258391 Tyr GTA gcccgggaaa cttttttgtt 0 0 32.40 26.89 5.51 Eufind   scaffold173 1 143173 143246 Arg ACG agacgaggtg caaccggccg 0 0 44.58 35.59 8.99 Eufind   scaffold185 1 154022 153949 Pseudo TGG accaattgaa ctgacagagt 0 0 27.25 6.60 20.65 Both   scaffold187 1 294485 294557 Glu CTC ttgtcagcaa ttttttctcc 0 0 79.78 56.24 23.54 Both   scaffold193 1 267143 267071 Arg ACG acagctatca tcatcgtgta 0 0 73.66 52.08 21.58 Both scaffold193 2 117892 117819 Asn GTT aaacaagcaa ataagttatt 0 0 81.83 55.73 26.10 Both scaffold193 3 111462 111389 Asn GTT aagcaagcac ataagtattt 0 0 81.83 55.73 26.10 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold197 1 239649 239720 Met CAT ctatcaacat aaaagagtag 0 0 67.87 40.24 27.63 Both   scaffold200 1 248938 249010 Lys TTT aaaacgtaca actgttaact 0 0 88.06 63.50 24.56 Both scaffold200 2 145791 145720 Asp GTC actcaacgaa ttttttcttt 0 0 70.78 52.44 18.34 Both scaffold200 3 142079 142008 Asp GTC tctcaacaaa cttcttcttt 0 0 70.78 52.44 18.34 Both   scaffold201 1 170232 170305 Pseudo GTG aatattaggg gataaccgta 0 0 22.13 22.62 -0.49 Eufind   scaffold220 1 3380 3307 Thr AGT ttgtcaaata acttggttat 0 0 76.90 50.29 26.61 Both   scaffold258 1 76913 76995 Leu AAG tgaaaccatc tatgatggcc 76950 76955 28.57 22.48 6.09 Eufind   scaffold286 1 14073 14146 Met CAT agatccgtag ccacatcatg 0 0 54.37 32.06 22.31 Both scaffold286 2 53670 53597 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold287 1 60753 60681 Arg TCT ggtcgatgag gttccgaata 0 0 71.91 51.77 20.14 Both   scaffold297 1 31257 31328 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both scaffold297 2 34210 34281 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both   scaffold311 1 66834 66763 Pseudo TGC actaactgat tttactcgtt 0 0 28.86 26.40 2.46 Eufind scaffold311 2 15950 15886 Thr TGT ctgatctaat ctccattaac 0 0 28.53 10.52 18.01 Eufind   scaffold371 1 43648 43576 Met CAT aagggtaaga aagaacgtcg 0 0 46.45 33.33 13.12 Both   scaffold376 1 27506 27432 Pro TGG gggggtgaga ccataacctt 0 0 54.34 25.42 28.92 Both scaffold376 2 24411 24332 Pseudo GTA tcttcttcct ctaatccacc 0 0 28.29 7.44 20.85 Eufind   scaffold407 1 21489 21570 Pseudo AAA ttaaccatct tatgatggcc 21525 21530 20.11 16.41 3.70 Eufind   scaffold413 1 34615 34536 Pseudo GTA tcttcttcct ctaatccacc 0 0 28.29 7.44 20.85 Eufind   scaffold422 1 1173 1099 Pro TGG gggggtgaga ccataacctt 0 0 54.34 25.42 28.92 Both   scaffold431 1 37968 38041 His GTG gggggtaggg caaaaggaga 0 0 50.71 32.92 17.79 Both   scaffold438 1 36169 36098 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both scaffold438 2 33216 33145 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both   scaffold451 1 31453 31526 Met CAT agatccgtag ccacatcatg 0 0 54.37 32.06 22.31 Both scaffold451 2 33046 33119 Met CAT agatccgtag ccacatcatg 0 0 54.37 32.06 22.31 Both scaffold451 3 8448 8386 Ile GAT gactctcttt ctttgaacgt 0 0 33.75 22.87 10.88 Eufind scaffold451 4 5056 4994 Ile GAT gactctcttt ctttgaacgt 0 0 33.75 22.87 10.88 Eufind   scaffold455 1 4032 4114 Pseudo AAG agtaaccatc tatgatggcc 4069 4077 22.40 24.52 -2.12 Eufind   scaffold515 1 126565 126637 Arg TCT ggtcgatgag gttccgaata 0 0 71.91 51.77 20.14 Both   scaffold616 1 12060 11981 Pseudo ??? ggttaccaaa gacaggaaaa 0 0 34.08 4.16 29.92 Eufind   scaffold626 1 10203 10130 Asp GTC tggctttctg acctaggatc 0 0 60.73 43.27 17.46 Both scaffold626 2 5216 5130 Ser GGA agattatgta ccagtggaag 0 0 58.88 32.52 26.36 Both   scaffold635 1 23745 23832 Ser GCT ttccgatcat gcagaacggg 0 0 42.95 28.70 14.25 Both scaffold635 2 24175 24248 Phe GAA taggaaagtg ggcgaagggt 0 0 55.58 39.05 16.53 Both scaffold635 3 24501 24575 Pro TGG gggggtgaga ccaaggaagg 0 0 54.34 25.42 28.92 Both scaffold635 4 16943 16870 Trp CCA tgataagaaa attccgaatc 0 0 64.70 35.18 29.52 Both scaffold635 5 7106 7035 Glu TTC tggcttgttg ggtacgtgtt 0 0 65.98 40.49 25.49 Both   scaffold644 1 30677 30756 Pseudo AAG aattaagaaa atattgatgg 30712 30720 23.65 24.09 -0.44 Eufind   scaffold653 1 14581 14643 Ile GAT gactctcttt ctttgaacgt 0 0 33.75 22.87 10.88 Eufind   scaffold666 1 2718 2791 Asp GTC tggctttctg acctaggatc 0 0 60.73 43.27 17.46 Both scaffold666 2 7705 7791 Ser GGA agattatgta ccagtggaag 0 0 58.88 32.52 26.36 Both   scaffold746 1 7503 7432 Thr TGT aagcaacaag tgatttatat 0 0 78.52 50.14 28.38 Both   scaffold760 1 9936 10008 Met CAT attctaaatg taacttatta 0 0 55.75 31.54 24.21 Both scaffold760 2 16479 16551 Met CAT attctaaatg taacttatta 0 0 55.75 31.54 24.21 Both   scaffold773 1 6112 6182 Gly GCC ataccaacaa acaatttttc 0 0 71.56 51.49 20.07 Both   scaffold836 1 9870 9798 Ala TGC gaaatcaaaa tttctgtttt 0 0 69.90 45.16 24.74 Both   scaffold838 1 6206 6278 Lys TTT atctttttta accctacctt 0 0 74.23 58.49 15.74 Both   scaffold938 1 4930 5003 Val AAC gtggcatcag ttgttttctt 0 0 76.67 54.09 22.58 Both   scaffold1007 1 1078 1149 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both scaffold1007 2 3857 3928 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both   scaffold1077 1 442 372 Gly GCC aattaaagag ttcccgagct 0 0 71.56 51.49 20.07 Both   scaffold1103 1 10316 10245 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both   scaffold1199 1 3452 3531 Leu TAG ttttgagcaa taacattttt 0 0 55.62 26.78 28.84 Both   scaffold1228 1 12795 12714 Leu AAG cggatcatct tatgatggcc 12759 12754 22.96 15.74 7.22 Eufind   scaffold1382 1 230 148 Leu TAA ggcttgccgt ccaggctcta 0 0 50.64 17.23 33.41 Eufind   scaffold1448 1 11195 11109 Ser GGA tcattatgta caccttcacc 0 0 55.31 28.95 26.36 Both   scaffold1449 1 3012 3091 Pseudo GTA tcttcttcct ctaatccacc 0 0 28.29 7.44 20.85 Eufind   scaffold1591 1 5046 4975 His GTG tcagcatctc tccggttcaa 0 0 56.89 34.96 21.93 Both   scaffold1593 1 4591 4520 Met CAT gatacacaaa agagaaaggc 0 0 68.81 41.37 27.44 Both   scaffold1646 1 6600 6672 Arg ACG cacaatcaag tnnnnnnnnn 0 0 74.06 52.84 21.22 Both   scaffold1700 1 1287 1358 Asp GTC ctccaccaaa cttctctttt 0 0 69.46 51.11 18.35 Both   scaffold1981 1 2152 2081 Pro TGG ttaataaaac tagctctacg 0 0 73.73 45.85 27.88 Both   scaffold2434 1 7490 7561 Pro AGG ccacacaaga agttttatgt 0 0 71.75 43.88 27.87 Both   scaffold2803 1 5884 5800 Met CAT tatcaacaaa atattttgtt 5846 5836 61.15 41.05 20.10 Both   scaffold2835 1 7030 6957 Pro TGG accaattgaa cttattactt 0 0 54.91 29.85 25.06 Both scaffold2835 2 6729 6656 Trp CCA taataaaaaa agtccattct 0 0 65.83 36.76 29.07 Both   scaffold2924 1 1414 1486 Ala GGC ttgcagcaga ccaaaattga 0 0 60.65 38.43 22.22 Both scaffold2924 2 1527 1599 Glu TTC ttctaggatt ccaagtttgc 0 0 55.38 29.16 26.22 Both scaffold2924 3 1647 1720 Asp GTC ctgtctgcca ccagattcct 0 0 80.86 57.99 22.87 Both   scaffold2929 1 6070 6155 Leu AAG tataaaccat tgatggccac 6108 6113 20.73 10.26 10.47 Eufind   scaffold3153 1 892 963 Asn GTT ctcccattgt atttgattca 0 0 57.61 43.67 13.94 Eufind   scaffold3183 1 6836 6754 Tyr GTA agttctctgc ccagaatgca 0 0 59.50 30.52 28.98 Both scaffold3183 2 6700 6630 Gly TCC aagtaaccgg ccagcctacc 0 0 64.15 43.39 20.76 Both scaffold3183 3 6589 6518 Thr GGT gtcaagtttc ccatcaatcc 0 0 80.22 51.06 29.16 Both   scaffold3234 1 678 764 Ser GGA cgcggtcttc ccaaaatgat 0 0 63.40 28.06 35.34 Both   scaffold3361 1 556 483 Gln TTG aggcctgtgt ccaaacgtct 0 0 44.32 20.79 23.53 Both   scaffold3365 1 6581 6652 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both   scaffold3402 1 6626 6539 Ser GCT ttctcaattg gttccgttga 0 0 55.06 26.73 28.33 Both scaffold3402 2 764 691 His GTG agtattaggg catgaaccct 0 0 53.21 31.72 21.49 Both   scaffold3446 1 570 499 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both   scaffold3963 1 4138 4059 Leu TAG aacagtacaa gatttatttt 0 0 68.72 40.52 28.20 Both scaffold3963 2 2720 2641 Leu TAG taacattcaa tatttatttt 0 0 68.72 40.52 28.20 Both   scaffold4003 1 167 96 Gly TCC atcaacaaaa tttttacttg 0 0 73.14 51.13 22.01 Both   scaffold4449 1 2959 2889 Gly GCC gtatcaacaa cgtagagcaa 0 0 68.86 48.79 20.07 Both scaffold4449 2 1337 1267 Gly GCC gagtcaacaa gagaagagca 0 0 71.56 51.49 20.07 Both   scaffold4751 1 1448 1535 Ser GCT ttctcaattg gttccgttga 0 0 55.06 26.73 28.33 Both scaffold4751 2 2754 2825 Gln TTG aaaatagaaa agcatattta 0 0 52.77 27.71 25.06 Both   scaffold4782 1 782 701 Ser AGA atcaactgtt atttttattt 0 0 82.35 52.68 29.67 Both   scaffold5338 1 186 257 Asp GTC gtcaggctag cttcttttgg 0 0 75.39 51.95 23.44 Both scaffold5338 2 2801 2874 Ile AAT tagcatcact ttcttatgcc 0 0 82.79 62.12 20.67 Both scaffold5338 3 2643 2571 Phe GAA gcatcatccg gttgcctcgc 0 0 78.36 55.42 22.94 Both scaffold5338 4 2476 2404 Lys TTT ctcgtgtcga aggctaccct 0 0 80.75 56.46 24.29 Both scaffold5338 5 591 520 Pro AGG ccatcgccac gacactcttt 0 0 74.80 51.55 23.25 Both   scaffold5802 1 1224 1297 Gln TTG tagatcttct ccagatagac 0 0 44.32 20.79 23.53 Both   scaffold5959 1 1242 1325 Tyr GTA tatatataaa tttaaatatg 0 0 37.87 10.64 27.23 Eufind   scaffold6008 1 205 287 Leu TAA attcgcatca ccaccttttt 0 0 65.18 27.10 38.08 Both   scaffold6371 1 137 209 Ala AGC taaacatcaa tttcctcatt 0 0 68.12 43.78 24.34 Both   scaffold6869 1 1650 1579 Pseudo AGA ccggtatctc acatttttcg 0 0 20.82 39.30 -18.48 Eufind   scaffold6877 1 850 777 Thr AGT gccagcaaat tttcgatgat 0 0 74.28 46.95 27.33 Both   scaffold7095 1 1122 1049 Ile GAT tgcgtggact ccaagattcc 0 0 70.28 46.74 23.54 Both scaffold7095 2 1015 943 Ala TGC cgaggatccc ccaagatcgc 0 0 65.43 44.07 21.36 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold7153 1 925 845 Leu AAG gtcgtcaaat ttctcttttc 0 0 69.68 40.32 29.36 Both   scaffold7222 1 217 145 Glu TTC cgtcttgagc ccaagaacca 0 0 63.52 37.93 25.59 Both   scaffold7726 1 2024 1953 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both   scaffold7801 1 1220 1291 Lys TTT taaacagcta tcctttgtca 0 0 84.47 59.91 24.56 Both   scaffold7924 1 1638 1565 Arg TCT gcggccatac ccatcctggc 0 0 72.44 45.88 26.56 Both   scaffold8024 1 748 821 Val GAC gaacaaacac ccaattttcc 0 0 69.98 41.54 28.44 Both   scaffold8060 1 1864 1781 Tyr GTA ttttcttcct ataattcact 0 0 51.74 25.37 26.37 Both   scaffold8400 1 1721 1792 Gly TCC catacaagaa ataattttta 0 0 73.14 51.13 22.01 Both   scaffold8505 1 140 221 Leu AAG caaaccatct tatgatggcc 176 184 24.85 14.85 10.00 Eufind   scaffold8778 1 1468 1381 Ser TGA attcaaaatg tttttataac 0 0 46.91 18.80 28.11 tRNAscan   scaffold9277 1 294 221 Asn GTT ctagccaacg aagttcattt 0 0 80.45 54.30 26.15 Both   scaffold9629 1 438 366 His GTG ttcttctacg ccaaataaaa 0 0 66.26 42.37 23.89 Both scaffold9629 2 106 34 His GTG tgcttcaacg ccaaacaaaa 0 0 66.26 42.37 23.89 Both   scaffold9690 1 1023 1096 Ile TAT gaagcatcgt atgtttctga 0 0 85.40 69.82 15.58 Both   scaffold10023 1 1071 979 Tyr GTA tggatagctt aaaatccttt 1034 1015 72.93 45.20 27.73 Both   scaffold10063 1 904 985 Ser CGA ttagtaaacc cttctatcct 0 0 77.47 45.62 31.85 Both   scaffold10221 1 1096 1023 Ile AAT ccatcggatt tttatattgt 0 0 85.07 59.58 25.49 Both   scaffold10316 1 1241 1313 Glu CTC cacgccaaca agtcattctt 0 0 77.31 53.42 23.89 Both   scaffold10589 1 620 548 Asn GTT aaatttttat taaaccccaa 0 0 47.62 21.75 25.87 Eufind scaffold10589 2 393 309 Pseudo TAA attttaccct atttgcttcc 0 0 37.45 -10.90 48.35 tRNAscan scaffold10589 3 263 192 Met CAT aactttacga attaatcaac 0 0 48.04 22.06 25.98 Both   scaffold10675 1 1202 1130 Arg TCT attgtgaata tgttctttct 0 0 71.91 51.77 20.14 Both   scaffold10768 1 435 508 Pro CGG aaaaaagcaa ccatttctgg 0 0 61.72 31.78 29.94 Both   scaffold11214 1 912 984 Arg CCG gatgccctga ccacaatttt 0 0 79.42 60.18 19.24 Both scaffold11214 2 1079 1161 Tyr GTA aaatctcttc ccagtaatgg 0 0 57.99 27.84 30.15 Both scaffold11214 3 1220 1290 Gly TCC gtcaatctgt ccagttggcg 0 0 66.40 50.39 16.01 Both scaffold11214 4 1337 1408 Thr GGT cagcctcaag ccattatctc 0 0 80.22 51.06 29.16 Both   scaffold11293 1 508 436 Phe GAA gagcgtgaag ttcttcttct 0 0 77.43 54.21 23.22 Both   scaffold11359 1 1277 1204 Arg ACG gcgaagcgtt ccaaaaaacg 0 0 71.00 57.50 13.50 Both   scaffold11540 1 1121 1048 Pseudo GTC tcgtttctct acaaatccaa 0 0 41.63 37.92 3.71 Eufind   scaffold11547 1 1476 1394 Leu TAA attcgcatca ccaccttctt 0 0 65.18 27.10 38.08 Both   scaffold11678 1 1094 1167 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold11770 1 274 201 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold11859 1 28 99 Thr CGT tgtccgtaca catcttttgc 0 0 76.20 62.53 13.67 Both scaffold11859 2 820 900 Ser GCT tgcgcacgat ttttcctttt 0 0 75.61 42.49 33.12 Both scaffold11859 3 1470 1399 Trp CCA gtgtcggggg tcctttgcgc 0 0 69.87 53.93 15.94 Both   scaffold12093 1 728 657 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both   scaffold12244 1 616 545 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both   scaffold12679 1 91 162 Gln TTG tcgggagcct cattttcttt 0 0 70.28 47.34 22.94 Both scaffold12679 2 491 572 Ser TGA ctccacggca tttctttttt 0 0 86.34 53.02 33.32 Both scaffold12679 3 890 818 Val CAC ggggagaggc ctgcgctctt 0 0 76.30 55.73 20.57 Both scaffold12679 4 730 658 Met CAT caagacaaga aagcttttgc 0 0 72.82 53.56 19.26 Both scaffold12679 5 367 286 Leu TAG acgttcagcg gttccctttt 0 0 72.56 45.67 26.89 Both   scaffold12850 1 640 568 Ala AGC atcacagaaa atatattttt 0 0 68.12 43.78 24.34 Both   scaffold12860 1 1308 1379 Gln TTG ctaacaaagt cttttttgct 0 0 74.09 57.50 16.59 Both   scaffold12909 1 1198 1118 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold13163 1 1119 1047 Ala TGC tttacaaaac atattttctc 0 0 66.31 41.98 24.33 Both   scaffold13262 1 782 854 Arg ACG acagtgccac ctacgcgatt 0 0 73.61 53.76 19.85 Both scaffold13262 2 945 1016 Cys GCA tccgcatcga ggccgcactt 0 0 76.52 57.45 19.07 Both scaffold13262 3 1155 1225 Gly GCC gcctgcagcg gttttggttt 0 0 82.25 63.27 18.98 Both scaffold13262 4 676 604 Ala AGC cagccgtgtc cattttgtgt 0 0 68.73 44.86 23.87 Both scaffold13262 5 489 408 Ser GCT gcgagagcaa gtgcgttgtt 0 0 82.69 53.52 29.17 Both scaffold13262 6 339 268 Gln CTG ctgacgacgc acttttatct 0 0 71.20 46.90 24.30 Both scaffold13262 7 194 122 Thr AGT tagggcgcga ctgcctactt 0 0 81.57 54.77 26.80 Both   scaffold13844 1 266 195 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both   scaffold13864 1 170 249 Leu TAG ttttgagcaa taacattttt 0 0 55.62 26.78 28.84 Both   scaffold14076 1 1011 1084 Arg ACG agacgaggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind   scaffold14091 1 874 794 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold14154 1 771 844 Val GAC tcccttcaac ccaacgcatc 0 0 69.45 40.53 28.92 Both   scaffold14734 1 919 992 Arg ACG cgttgtcttg ccaaaacgac 0 0 71.00 57.50 13.50 Both scaffold14734 2 1165 1238 Arg ACG tcgaagcttg ccaaaacgac 0 0 71.00 57.50 13.50 Both   scaffold14777 1 432 360 Glu CTC ttaccataaa cttttttttt 0 0 79.78 56.24 23.54 Both   scaffold14805 1 544 473 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both   scaffold15198 1 192 122 Cys GCA ctattgcctt gatcaacaaa 0 0 58.88 38.81 20.07 Both   scaffold15441 1 541 612 Pro TGG ccccagcgca aggcttttag 0 0 70.51 53.49 17.02 Both scaffold15441 2 1048 1119 Pro AGG gcccaccgct ttgcttttgc 0 0 75.92 53.85 22.07 Both scaffold15441 3 426 334 Ile TAT aggctccagg cagctggctc 388 370 62.87 37.81 25.06 Both   scaffold15561 1 962 1034 Met CAT aagggtaaga aagaacgtcg 0 0 46.45 33.33 13.12 Both   scaffold15635 1 328 400 Pseudo GCC agcactgctt cttttgtttt 0 0 33.44 34.67 -1.23 Eufind scaffold15635 2 490 562 Asn GTT agcagcacgg gcgacccttt 0 0 83.95 62.65 21.30 Both scaffold15635 3 827 899 Val TAC ccgtcgccgc gctcccctgt 0 0 77.18 50.22 26.96 Both scaffold15635 4 987 1058 Trp CCA gccctccctc tgcggaaccc 0 0 73.76 51.61 22.15 Both scaffold15635 5 1138 1210 Thr CGT acagagggtg cttttgtttc 0 0 80.46 56.00 24.46 Both   scaffold15838 1 1133 1215 Leu AAG attaatcatt tatgatggcc 1170 1178 26.29 19.77 6.52 Eufind   scaffold16361 1 357 286 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both   scaffold16838 1 825 898 Arg ACG agacgaggtg caaccggcca 0 0 56.41 47.71 8.70 Eufind   scaffold16867 1 797 870 Arg ACG agacgaggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind   scaffold17345 1 440 367 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both   scaffold17732 1 802 882 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold17779 1 589 662 Arg TCG cccatgtcag tttattttga 0 0 82.11 60.83 21.28 Both   scaffold18127 1 317 246 Asp GTC tggcaacaag ttaaactttt 0 0 69.46 51.11 18.35 Both   scaffold18395 1 715 643 Met CAT ataaatttta cacttaaaaa 0 0 42.70 18.61 24.09 Both   scaffold18402 1 1095 1023 Glu CTC aaccaagaaa acgtttttta 0 0 77.21 53.67 23.54 Both   scaffold18487 1 1006 933 Arg ACG tttctcggtt ccaacctata 0 0 73.21 59.72 13.49 Both   scaffold18642 1 151 224 His GTG agtattaggg catgaaccct 0 0 53.21 31.72 21.49 Both   scaffold18780 1 632 551 Leu AAG ggaactatct tatgatggcc 596 591 21.26 13.07 8.19 Eufind   scaffold18795 1 1054 1116 Pseudo GTG acatcgaagt ccagcagcca 0 0 26.93 2.87 24.06 Eufind   scaffold18962 1 657 586 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both   scaffold19297 1 73 145 Arg ACG tgtcagaagc tccatttttg 0 0 65.99 57.11 8.88 Both scaffold19297 2 777 849 Arg ACG tgtcagaagc tccatttttg 0 0 65.99 57.11 8.88 Both   scaffold19369 1 838 758 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold19483 1 240 320 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both   scaffold19948 1 513 583 Cys GCA atgcggtggc cggggagtgg 0 0 40.08 25.64 14.44 Both   scaffold20552 1 148 76 Phe GAA taacacagtt tgcataactt 0 0 77.43 54.21 23.22 Both   scaffold20690 1 231 302 Pro TGG acacaacagt cattaaaaac 0 0 74.34 46.93 27.41 Both   scaffold20723 1 145 226 Ser AGA ggggacacga ttttggttta 0 0 83.30 50.10 33.20 Both scaffold20723 2 303 375 Ala TGC gcaagacaca gacggccctc 0 0 64.23 40.35 23.88 Both scaffold20723 3 466 537 Pro AGG gtgcagcacg ttccccgctc 0 0 74.80 51.55 23.25 Both scaffold20723 4 865 793 Ala CGC ccccagcggc cccacacttt 0 0 56.20 34.77 21.43 Both scaffold20723 5 677 606 Asp GTC tccaccgcag gatttccttt 0 0 72.30 52.24 20.06 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold21726 1 744 673 Asn GTT ctcccgttgt atgtgattca 0 0 77.16 56.33 20.83 Both   scaffold21940 1 673 601 Glu TTC gttgaatgtt ccatttaagg 0 0 58.29 37.05 21.24 Both   scaffold22022 1 648 562 Ser CGA ccaagttacc ccataacaaa 0 0 61.90 30.06 31.84 Both   scaffold38224 1 426 498 Met CAT attctaaatt taacttatta 0 0 55.75 31.54 24.21 Both

---

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.