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tRNAscan-SE Analysis of Populus trichocarpa (June 2004 Version 1.0)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgXIII 9 7474181 7474253 Ala AGC ggagtaagaa ttttgtttta 0 0 65.95 43.62 22.33 Both lgI 1 681590 681662 Ala AGC gacagcaaac ttttgtattt 0 0 68.12 43.78 24.34 Both lgI 22 21288548 21288620 Ala AGC agcatgttgt tttttatttg 0 0 68.12 43.78 24.34 Both lgIII 10 12254797 12254869 Ala AGC caaatcaaca ttttctcttg 0 0 68.12 43.78 24.34 Both lgIII 11 12433651 12433723 Ala AGC ccctgtctct ttctttttgg 0 0 68.12 43.78 24.34 Both lgIII 19 18898288 18898360 Ala AGC ggttgcaaat ttcttttatt 0 0 68.12 43.78 24.34 Both lgIII 34 9679892 9679820 Ala AGC tccacgcaaa ctttttcccc 0 0 68.12 43.78 24.34 Both lgV 25 1523580 1523508 Ala AGC atataagatt ttttttttaa 0 0 68.12 43.78 24.34 Both lgVI 34 3246000 3245928 Ala AGC gtctcaacaa cttcaatgtt 0 0 68.12 43.78 24.34 Both lgVII 16 4232518 4232446 Ala AGC atcaaagaaa atatattttt 0 0 68.12 43.78 24.34 Both lgVII 22 1627204 1627132 Ala AGC tttcaacaat agcttccctt 0 0 68.12 43.78 24.34 Both lgXI 10 12971176 12971248 Ala AGC taaacatcaa ttttctcttt 0 0 68.12 43.78 24.34 Both lgXIII 1 721112 721184 Ala AGC tatcgtcaaa ttttctccca 0 0 68.12 43.78 24.34 Both lgXVI 11 11257940 11258012 Ala AGC ttaagtaaat ttgtatttta 0 0 68.12 43.78 24.34 Both lgXVI 12 11275201 11275273 Ala AGC ttgagccaaa ttatggattt 0 0 68.12 43.78 24.34 Both lgXVI 6 3705804 3705876 Ala AGC gtagcggcaa ctctctctac 0 0 68.12 43.78 24.34 Both lgXVII 5 3603416 3603488 Ala AGC aattggtggc tttcttctgg 0 0 68.12 43.78 24.34 Both scaffold12850 1 640 568 Ala AGC atcacagaaa atatattttt 0 0 68.12 43.78 24.34 Both scaffold133 3 629701 629629 Ala AGC tttccagaat tcctttgttt 0 0 68.12 43.78 24.34 Both scaffold29 4 2691519 2691447 Ala AGC gagcgtcagt tttaatttat 0 0 68.12 43.78 24.34 Both scaffold6371 1 137 209 Ala AGC taaacatcaa tttcctcatt 0 0 68.12 43.78 24.34 Both scaffold13262 4 676 604 Ala AGC cagccgtgtc cattttgtgt 0 0 68.73 44.86 23.87 Both scaffold20723 4 865 793 Ala CGC ccccagcggc cccacacttt 0 0 56.20 34.77 21.43 Both lgI 55 6620911 6620839 Ala CGC ttaaatatat tcaaaattgt 0 0 63.43 41.85 21.58 Both lgIII 13 13011164 13011236 Ala CGC acaacaagtc gccgtatatt 0 0 63.43 41.85 21.58 Both lgXIV 5 3512774 3512846 Ala CGC agagtagatt tttgggtttt 0 0 64.52 40.18 24.34 Both lgXII 2 1877359 1877431 Ala CGC atggccgtac agtttttcat 0 0 65.14 41.26 23.88 Both lgXV 24 947303 947231 Ala CGC caacatgtgc ccttttaggt 0 0 65.14 41.26 23.88 Both scaffold2924 1 1414 1486 Ala GGC ttgcagcaga ccaaaattga 0 0 60.65 38.43 22.22 Both lgVI 33 4174641 4174569 Ala TGC tctacaaccg tatcttgtcg 0 0 61.98 37.23 24.75 Both scaffold20723 2 303 375 Ala TGC gcaagacaca gacggccctc 0 0 64.23 40.35 23.88 Both scaffold7095 2 1015 943 Ala TGC cgaggatccc ccaagatcgc 0 0 65.43 44.07 21.36 Both lgI 19 19798086 19798158 Ala TGC ctgcataaaa ttcaattcac 0 0 66.31 41.98 24.33 Both lgI 47 19486630 19486558 Ala TGC gcttgtctgc cgtttctatt 0 0 66.31 41.98 24.33 Both lgI 48 19458700 19458628 Ala TGC cttacaacaa catgggtttt 0 0 66.31 41.98 24.33 Both lgII 26 16755655 16755583 Ala TGC aatctcaaat cttttgcatg 0 0 66.31 41.98 24.33 Both lgIX 33 6263502 6263430 Ala TGC atttcgtaat aacatttcac 0 0 66.31 41.98 24.33 Both lgVI 9 11151309 11151381 Ala TGC tttataaaac atattatctc 0 0 66.31 41.98 24.33 Both lgXIV 6 4879462 4879534 Ala TGC aaggacaaac cataccactt 0 0 66.31 41.98 24.33 Both lgXVI 5 2851412 2851484 Ala TGC tccatcgaac tttttttttt 0 0 66.31 41.98 24.33 Both scaffold13163 1 1119 1047 Ala TGC tttacaaaac atattttctc 0 0 66.31 41.98 24.33 Both lgIII 26 14408210 14408138 Ala TGC attatcgaaa tttcgtttat 0 0 69.90 45.16 24.74 Both lgIX 16 6522007 6522079 Ala TGC tgacgtccga cttgcgtccg 0 0 69.90 45.16 24.74 Both lgXIII 4 1928550 1928622 Ala TGC tacccgaaat tcttatattt 0 0 69.90 45.16 24.74 Both lgXIII 8 3468110 3468182 Ala TGC agttgcatca tatttgtttc 0 0 69.90 45.16 24.74 Both lgXIX 5 2527444 2527372 Ala TGC atttcatgta attgttttta 0 0 69.90 45.16 24.74 Both lgXVIII 7 12337294 12337222 Ala TGC tttacaaaat ttatttttta 0 0 69.90 45.16 24.74 Both scaffold836 1 9870 9798 Ala TGC gaaatcaaaa tttctgtttt 0 0 69.90 45.16 24.74 Both   scaffold173 1 143173 143246 Arg ACG agacgaggtg caaccggccg 0 0 44.58 35.59 8.99 Eufind scaffold16838 1 825 898 Arg ACG agacgaggtg caaccggcca 0 0 56.41 47.71 8.70 Eufind scaffold14076 1 1011 1084 Arg ACG agacgaggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold16867 1 797 870 Arg ACG agacgaggtg caaccggcca 0 0 61.16 46.00 15.16 Eufind scaffold19297 1 73 145 Arg ACG tgtcagaagc tccatttttg 0 0 65.99 57.11 8.88 Both scaffold19297 2 777 849 Arg ACG tgtcagaagc tccatttttg 0 0 65.99 57.11 8.88 Both scaffold11359 1 1277 1204 Arg ACG gcgaagcgtt ccaaaaaacg 0 0 71.00 57.50 13.50 Both scaffold14734 1 919 992 Arg ACG cgttgtcttg ccaaaacgac 0 0 71.00 57.50 13.50 Both scaffold14734 2 1165 1238 Arg ACG tcgaagcttg ccaaaacgac 0 0 71.00 57.50 13.50 Both lgI 59 2187373 2187301 Arg ACG tgacatgtag actttctttt 0 0 72.19 50.65 21.54 Both scaffold18487 1 1006 933 Arg ACG tttctcggtt ccaacctata 0 0 73.21 59.72 13.49 Both scaffold13262 1 782 854 Arg ACG acagtgccac ctacgcgatt 0 0 73.61 53.76 19.85 Both lgIII 18 17203575 17203647 Arg ACG cggcatgaaa tggttgattt 0 0 73.66 52.08 21.58 Both lgV 2 1280935 1281007 Arg ACG tcaacaaaag tcttctcatt 0 0 73.66 52.08 21.58 Both lgVIII 16 12589308 12589236 Arg ACG agtcaacaag ttattccaat 0 0 73.66 52.08 21.58 Both lgX 32 6816346 6816274 Arg ACG tagcacggag tttattgtgg 0 0 73.66 52.08 21.58 Both scaffold193 1 267143 267071 Arg ACG acagctatca tcatcgtgta 0 0 73.66 52.08 21.58 Both lgIV 8 10844219 10844291 Arg ACG cacaatcaag ttccttttat 0 0 74.06 52.84 21.22 Both scaffold1646 1 6600 6672 Arg ACG cacaatcaag tnnnnnnnnn 0 0 74.06 52.84 21.22 Both lgIX 15 5880731 5880803 Arg ACG ggcatcagat tagcctagat 0 0 75.05 53.47 21.58 Both lgX 27 18086987 18086915 Arg CCG aatctcaagt cattctttcc 0 0 58.09 51.55 6.54 Eufind lgV 21 2840866 2840794 Arg CCG ttctcaatac gtttttgcta 0 0 69.19 51.56 17.63 Both lgVII 11 6564804 6564732 Arg CCG attcacaagt tttattaact 0 0 69.19 51.56 17.63 Both lgVI 18 17276962 17277034 Arg CCG accaccagtg ctttttatca 0 0 70.60 53.04 17.56 Both scaffold11214 1 912 984 Arg CCG gatgccctga ccacaatttt 0 0 79.42 60.18 19.24 Both lgVIII 5 2924254 2924326 Arg CCG aatcacaatt gtttcccttt 0 0 83.85 60.78 23.07 Both lgXII 19 10961661 10961589 Arg CCT gtaacaacta tacttccttt 0 0 70.50 49.60 20.90 Both lgXV 19 6622029 6621957 Arg CCT gtatcaagaa tataaacctt 0 0 70.50 49.60 20.90 Both lgII 12 9554436 9554508 Arg CCT gaaagtcgta ttttgtaacc 0 0 72.14 52.52 19.62 Both scaffold40 2 2066554 2066482 Arg CCT gagcatcgaa tcataatcat 0 0 72.14 52.52 19.62 Both lgIII 39 4734168 4734096 Arg CCT acagcatcaa tgagtatctt 0 0 72.63 53.36 19.27 Both lgIX 10 3907929 3908001 Arg CCT tggcatctac atcctaccat 0 0 72.63 53.36 19.27 Both lgVI 15 15853185 15853257 Arg CCT gtaacaagaa aatttatttc 0 0 72.63 53.36 19.27 Both scaffold130 3 665500 665572 Arg CCT tatcagctaa gtcctctttt 0 0 72.63 53.36 19.27 Both lgVI 22 17148228 17148156 Arg CCT ttaacaagct agcgtttgtt 0 0 74.13 53.22 20.91 Both lgXVIII 14 5515445 5515373 Arg CCT gtatgaacaa ataaaagtta 0 0 74.13 53.22 20.91 Both lgXVIII 15 5509000 5508928 Arg CCT gtaagaacat ataaaagtta 0 0 74.13 53.22 20.91 Both scaffold163 2 388041 388114 Arg TCG gcacaatgag gttaaactac 0 0 81.86 60.33 21.53 Both scaffold163 3 408785 408858 Arg TCG gcacaatgag gttaaactac 0 0 81.86 60.33 21.53 Both lgI 49 19055417 19055344 Arg TCG ggtcagacag tagagttttt 0 0 82.11 60.83 21.28 Both lgIX 17 6883158 6883231 Arg TCG cccatgtcag tttattttga 0 0 82.11 60.83 21.28 Both lgVI 25 14136714 14136641 Arg TCG gagcaaacaa tttgattttc 0 0 82.11 60.83 21.28 Both lgVIII 1 1180407 1180480 Arg TCG ttgtgcataa tttttaaatt 0 0 82.11 60.83 21.28 Both lgX 23 21026944 21027017 Arg TCG accttcgaag gtttcaagtt 0 0 82.11 60.83 21.28 Both scaffold152 2 532730 532803 Arg TCG ataacatgtt cgtgagatta 0 0 82.11 60.83 21.28 Both scaffold17779 1 589 662 Arg TCG cccatgtcag tttattttga 0 0 82.11 60.83 21.28 Both lgXIV 11 10673918 10673846 Arg TCT gacatcaagt ctcttttttt 0 0 64.86 47.91 16.95 Both lgVI 3 5570405 5570477 Arg TCT tcaaacagag atgtgttttg 0 0 66.30 50.72 15.58 Both scaffold121 1 210068 210140 Arg TCT agcaaaacta aacttcaatt 0 0 66.30 50.72 15.58 Both scaffold130 4 764990 765062 Arg TCT ttaacaagaa agctttttga 0 0 66.30 50.72 15.58 Both lgIX 11 4004472 4004544 Arg TCT ctaacaaaaa atttaattat 0 0 67.95 52.37 15.58 Both lgII 38 6424113 6424041 Arg TCT cgagcaatca tctgttttgt 0 0 70.00 54.05 15.95 Both lgII 22 21866032 21866104 Arg TCT attgtgaata tgttctttct 0 0 71.91 51.77 20.14 Both scaffold10675 1 1202 1130 Arg TCT attgtgaata tgttctttct 0 0 71.91 51.77 20.14 Both scaffold287 1 60753 60681 Arg TCT ggtcgatgag gttccgaata 0 0 71.91 51.77 20.14 Both scaffold515 1 126565 126637 Arg TCT ggtcgatgag gttccgaata 0 0 71.91 51.77 20.14 Both scaffold7924 1 1638 1565 Arg TCT gcggccatac ccatcctggc 0 0 72.44 45.88 26.56 Both lgI 13 13823746 13823818 Arg TCT gtagcgtgaa cgttttttat 0 0 73.60 54.76 18.84 Both lgIII 5 5614714 5614786 Arg TCT tttacgtgca actttcattt 0 0 73.60 54.76 18.84 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold10589 1 620 548 Asn GTT aaatttttat taaaccccaa 0 0 47.62 21.75 25.87 Eufind scaffold3153 1 892 963 Asn GTT ctcccattgt atttgattca 0 0 57.61 43.67 13.94 Eufind lgI 10 8524391 8524462 Asn GTT ctgccgttgt atttgattca 0 0 59.72 44.30 15.42 Both scaffold169 1 257384 257455 Asn GTT aggaagttct attttgagtt 0 0 60.64 48.67 11.97 Eufind lgX 7 11601739 11601812 Asn GTT attgcaagaa attattttag 0 0 74.69 52.29 22.40 Both lgVIII 15 13119464 13119393 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both scaffold12093 1 728 657 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both scaffold12244 1 616 545 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both scaffold16361 1 357 286 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both scaffold21726 1 744 673 Asn GTT ctcccgttgt atgtgattca 0 0 77.16 56.33 20.83 Both scaffold3365 1 6581 6652 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both scaffold3446 1 570 499 Asn GTT ctcccgttgt atttgattca 0 0 77.16 56.33 20.83 Both lgI 60 1938338 1938265 Asn GTT gcagcaagaa ggcttttttt 0 0 77.92 51.81 26.11 Both lgII 21 21394100 21394173 Asn GTT gactcaagca cttccatttt 0 0 77.92 51.81 26.11 Both lgIX 48 1247676 1247603 Asn GTT catcaacaaa ccttggatat 0 0 77.92 51.81 26.11 Both lgVIII 26 8289512 8289439 Asn GTT gtgttaagtt agtgttgatt 0 0 77.92 51.81 26.11 Both lgVIII 30 5960572 5960499 Asn GTT gttatcaaca ttgaaaagct 0 0 77.92 51.81 26.11 Both lgXV 22 4430496 4430423 Asn GTT agtgatcaca ctttcttgtt 0 0 77.92 51.81 26.11 Both scaffold66 1 232787 232860 Asn GTT tatcaacacg acagaatcta 0 0 77.92 51.81 26.11 Both lgIV 12 14080873 14080946 Asn GTT catcaacagt tttttattaa 0 0 78.10 55.29 22.81 Both lgIX 43 4716609 4716536 Asn GTT gatcacacaa ttttgtacct 0 0 78.10 55.29 22.81 Both lgVIII 24 8889682 8889609 Asn GTT ctagccaacg aagttcattt 0 0 80.45 54.30 26.15 Both scaffold9277 1 294 221 Asn GTT ctagccaacg aagttcattt 0 0 80.45 54.30 26.15 Both lgIII 8 10929479 10929552 Asn GTT ctttcaacta ttttttttca 0 0 81.02 57.80 23.22 Both lgIX 45 3423012 3422939 Asn GTT gtcatcatct ttttttattt 0 0 81.33 54.81 26.52 Both lgI 51 13696698 13696625 Asn GTT agatcaacta ctttcatgcc 0 0 81.73 55.58 26.15 Both lgIV 19 6555922 6555849 Asn GTT ggatcaaata ctttcatttt 0 0 81.83 55.73 26.10 Both lgXII 28 49665 49592 Asn GTT ccatcaatca atttcttttt 0 0 81.83 55.73 26.10 Both lgXVIII 6 13373569 13373496 Asn GTT gaatcaataa agttgacttt 0 0 81.83 55.73 26.10 Both scaffold193 2 117892 117819 Asn GTT aaacaagcaa ataagttatt 0 0 81.83 55.73 26.10 Both scaffold193 3 111462 111389 Asn GTT aagcaagcac ataagtattt 0 0 81.83 55.73 26.10 Both scaffold15635 2 490 562 Asn GTT agcagcacgg gcgacccttt 0 0 83.95 62.65 21.30 Both   lgVII 20 2518636 2518563 Asp GTC tcgtttccct acaaatccaa 0 0 47.56 39.42 8.14 Both scaffold626 1 10203 10130 Asp GTC tggctttctg acctaggatc 0 0 60.73 43.27 17.46 Both scaffold666 1 2718 2791 Asp GTC tggctttctg acctaggatc 0 0 60.73 43.27 17.46 Both lgIV 3 2019224 2019295 Asp GTC cagcatcaag ctttactttt 0 0 68.75 53.18 15.57 Both lgIII 31 12006566 12006495 Asp GTC ttacaagcgt actgactttt 0 0 69.46 51.11 18.35 Both lgVI 13 14824248 14824319 Asp GTC gcacaacaaa tattttattt 0 0 69.46 51.11 18.35 Both lgVII 3 10326616 10326687 Asp GTC aaacaacaaa ttcttctgtt 0 0 69.46 51.11 18.35 Both lgVIII 34 3490126 3490055 Asp GTC gcacagcaat cttttttgta 0 0 69.46 51.11 18.35 Both lgXI 22 3130435 3130364 Asp GTC tagcaactaa ctcttatttt 0 0 69.46 51.11 18.35 Both lgXII 15 12841728 12841657 Asp GTC tgccagcaat tcttcttttt 0 0 69.46 51.11 18.35 Both lgXII 27 383960 383889 Asp GTC tatcaataag tcttttattt 0 0 69.46 51.11 18.35 Both lgXV 15 10304650 10304721 Asp GTC tctcaacaag tcattatttt 0 0 69.46 51.11 18.35 Both scaffold1700 1 1287 1358 Asp GTC ctccaccaaa cttctctttt 0 0 69.46 51.11 18.35 Both scaffold18127 1 317 246 Asp GTC tggcaacaag ttaaactttt 0 0 69.46 51.11 18.35 Both lgI 35 35275526 35275455 Asp GTC tgtcaccaag ttttctcttt 0 0 70.78 52.44 18.34 Both lgII 2 367781 367852 Asp GTC atcgaactgt attttagctt 0 0 70.78 52.44 18.34 Both lgIII 7 9658258 9658329 Asp GTC cgatcatcaa atagtttttg 0 0 70.78 52.44 18.34 Both lgIV 1 2002571 2002642 Asp GTC ctccaacaaa cttttctttt 0 0 70.78 52.44 18.34 Both lgIV 2 2003706 2003777 Asp GTC aatcaacaaa ttttcaattt 0 0 70.78 52.44 18.34 Both lgIV 22 4515360 4515289 Asp GTC tagcaacaag taaaactttt 0 0 70.78 52.44 18.34 Both lgV 13 17621235 17621164 Asp GTC aatcaaccaa tactttacca 0 0 70.78 52.44 18.34 Both lgV 14 17615828 17615757 Asp GTC caccaatcaa tctgttacaa 0 0 70.78 52.44 18.34 Both lgV 15 17612995 17612924 Asp GTC tttcaaccag atttttcatt 0 0 70.78 52.44 18.34 Both lgVI 30 6293214 6293143 Asp GTC tgacaaaaag tttgcttttg 0 0 70.78 52.44 18.34 Both lgVIII 28 6075250 6075179 Asp GTC ttacaacaag aatttgtttt 0 0 70.78 52.44 18.34 Both lgX 10 14534426 14534497 Asp GTC catcaacaag attttttttc 0 0 70.78 52.44 18.34 Both lgX 14 17352907 17352978 Asp GTC tctcaagaaa catctttttt 0 0 70.78 52.44 18.34 Both lgXI 21 3131040 3130969 Asp GTC ttacagctac ctcttatttt 0 0 70.78 52.44 18.34 Both scaffold124 3 804474 804545 Asp GTC gatcagcaag cttgccttct 0 0 70.78 52.44 18.34 Both scaffold124 4 807576 807647 Asp GTC taatcagcaa tagaactttt 0 0 70.78 52.44 18.34 Both scaffold200 2 145791 145720 Asp GTC actcaacgaa ttttttcttt 0 0 70.78 52.44 18.34 Both scaffold200 3 142079 142008 Asp GTC tctcaacaaa cttcttcttt 0 0 70.78 52.44 18.34 Both scaffold57 2 1970844 1970773 Asp GTC taccagcaaa ttagtatttt 0 0 70.78 52.44 18.34 Both scaffold88 2 597316 597245 Asp GTC aagcaaggaa ttatgttttc 0 0 70.78 52.44 18.34 Both scaffold20723 5 677 606 Asp GTC tccaccgcag gatttccttt 0 0 72.30 52.24 20.06 Both scaffold5338 1 186 257 Asp GTC gtcaggctag cttcttttgg 0 0 75.39 51.95 23.44 Both scaffold2924 3 1647 1720 Asp GTC ctgtctgcca ccagattcct 0 0 80.86 57.99 22.87 Both   lgII 40 4472835 4472765 Cys GCA actaaatcaa tgtcaacaaa 0 0 27.57 11.91 15.66 Eufind lgXIV 4 2214612 2214682 Cys GCA atgcggtggc cggggagtgg 0 0 40.08 25.64 14.44 Both scaffold19948 1 513 583 Cys GCA atgcggtggc cggggagtgg 0 0 40.08 25.64 14.44 Both scaffold15198 1 192 122 Cys GCA ctattgcctt gatcaacaaa 0 0 58.88 38.81 20.07 Both scaffold13262 2 945 1016 Cys GCA tccgcatcga ggccgcactt 0 0 76.52 57.45 19.07 Both lgI 52 11225813 11225742 Cys GCA aagacaactt tttttctctc 0 0 77.60 57.45 20.15 Both lgIX 24 12114226 12114297 Cys GCA catgaaaatt tgtgattttg 0 0 77.60 57.45 20.15 Both lgXVI 22 3106068 3105997 Cys GCA aatccaaaaa tgcaattgtt 0 0 77.60 57.45 20.15 Both scaffold152 1 182125 182196 Cys GCA tcttcaaatg ctaaatattt 0 0 77.60 57.45 20.15 Both lgII 27 14044259 14044188 Cys GCA aagccaatcg tttttattaa 0 0 78.18 58.76 19.42 Both lgIII 32 11962864 11962793 Cys GCA agagcacctt cttttaatat 0 0 78.18 58.76 19.42 Both lgVI 8 10336273 10336344 Cys GCA aaagcatcag tttttgttgt 0 0 78.18 58.76 19.42 Both lgXIII 19 1111190 1111119 Cys GCA tagcacaaac tttaacattt 0 0 78.18 58.76 19.42 Both lgXIV 17 4260420 4260349 Cys GCA ctactaatac ttgttttatg 0 0 78.18 58.76 19.42 Both scaffold133 1 277388 277459 Cys GCA tagtacaatt tttacagttt 0 0 78.18 58.76 19.42 Both lgIX 26 8957885 8957814 Cys GCA ataagcacag ttttatgtat 0 0 79.11 55.29 23.82 Both   lgII 16 13208987 13209058 Gln CTG gttcaaaagt actttttctt 0 0 68.64 48.70 19.94 Both scaffold120 1 548393 548464 Gln CTG catcaccata tgattttttc 0 0 69.12 49.54 19.58 Both lgIII 14 13060578 13060649 Gln CTG gagtgttcga ttcgttttct 0 0 69.79 49.85 19.94 Both lgXV 25 852100 852029 Gln CTG atagcaagat tctttttttt 0 0 69.79 49.85 19.94 Both scaffold29 2 3126027 3126098 Gln CTG tagcaagggt atacatgcat 0 0 70.59 50.44 20.15 Both lgIV 14 14416626 14416697 Gln CTG tataacaaat cctttttatt 0 0 70.84 51.62 19.22 Both scaffold13262 6 339 268 Gln CTG ctgacgacgc acttttatct 0 0 71.20 46.90 24.30 Both lgI 56 6525367 6525296 Gln CTG attggcacaa ttttacctct 0 0 71.44 51.51 19.93 Both lgIV 4 2249099 2249170 Gln CTG tgcaagaagt aagttttttg 0 0 71.93 52.34 19.59 Both lgXIII 14 11656193 11656122 Gln CTG taacagaaat tatatgtttt 0 0 71.93 52.34 19.59 Both scaffold66 3 982329 982258 Gln CTG tgtcaacagc ttttgtcaat 0 0 71.93 52.34 19.59 Both scaffold3361 1 556 483 Gln TTG aggcctgtgt ccaaacgtct 0 0 44.32 20.79 23.53 Both scaffold5802 1 1224 1297 Gln TTG tagatcttct ccagatagac 0 0 44.32 20.79 23.53 Both scaffold1007 2 3857 3928 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both scaffold1103 1 10316 10245 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both scaffold297 2 34210 34281 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both scaffold438 2 33216 33145 Gln TTG acaggccgta attatgaaca 0 0 51.09 21.78 29.31 Both scaffold4751 2 2754 2825 Gln TTG aaaatagaaa agcatattta 0 0 52.77 27.71 25.06 Both scaffold12679 1 91 162 Gln TTG tcgggagcct cattttcttt 0 0 70.28 47.34 22.94 Both lgII 39 5812614 5812543 Gln TTG gacagcacca tttgttctcg 0 0 74.09 57.50 16.59 Both lgII 6 5128773 5128844 Gln TTG agacatcaat ttccttttgt 0 0 74.09 57.50 16.59 Both lgIII 24 14926530 14926459 Gln TTG ttatcaagaa tttctcttct 0 0 74.09 57.50 16.59 Both lgIV 17 15563002 15562931 Gln TTG aacactccat ctgtacaacc 0 0 74.09 57.50 16.59 Both lgIX 5 2291657 2291728 Gln TTG agcaagttgt aaactctact 0 0 74.09 57.50 16.59 Both lgV 18 12444581 12444510 Gln TTG ccgatacatt ctattttttc 0 0 74.09 57.50 16.59 Both lgV 8 11555248 11555319 Gln TTG gaccgtatag tttcttttcc 0 0 74.09 57.50 16.59 Both lgXII 10 11830307 11830378 Gln TTG ctaacaaagt cttttttgct 0 0 74.09 57.50 16.59 Both lgXV 12 7523069 7523140 Gln TTG ccaacaagtt ctttttaata 0 0 74.09 57.50 16.59 Both scaffold12860 1 1308 1379 Gln TTG ctaacaaagt cttttttgct 0 0 74.09 57.50 16.59 Both scaffold134 2 644093 644022 Gln TTG tcagcatcct tatgtaccaa 0 0 74.09 57.50 16.59 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgV 11 16343934 16344006 Glu CTC ctaatgtctc tttctaattt 0 0 69.44 45.55 23.89 Both lgVI 26 12240853 12240781 Glu CTC tccacgcaaa atgtttcttt 0 0 71.18 52.38 18.80 Both lgVI 27 12225712 12225640 Glu CTC ttttcgtgat atgttttttt 0 0 73.14 49.60 23.54 Both lgXI 19 8809430 8809358 Glu CTC agtccagcaa tcttgatttt 0 0 75.25 51.70 23.55 Both lgII 32 10909114 10909042 Glu CTC aaccaagaaa acgtttttta 0 0 77.21 53.67 23.54 Both lgIV 16 15053819 15053891 Glu CTC ttgtcagcaa ataatttctt 0 0 77.21 53.67 23.54 Both lgIV 23 4198697 4198625 Glu CTC caaacaagaa gtcgttttcc 0 0 77.21 53.67 23.54 Both lgVII 5 11531135 11531207 Glu CTC taccaacaaa tttttaactt 0 0 77.21 53.67 23.54 Both scaffold18402 1 1095 1023 Glu CTC aaccaagaaa acgtttttta 0 0 77.21 53.67 23.54 Both lgII 44 1786631 1786559 Glu CTC cgcgccaaca agtcattctt 0 0 77.31 53.42 23.89 Both lgV 10 16342742 16342814 Glu CTC gtgtcgacaa tttaatttta 0 0 77.31 53.42 23.89 Both scaffold10316 1 1241 1313 Glu CTC cacgccaaca agtcattctt 0 0 77.31 53.42 23.89 Both lgVIII 12 11408167 11408239 Glu CTC agaacatcta tataaccttt 0 0 77.70 54.15 23.55 Both lgXI 18 8823071 8822999 Glu CTC agtccagcaa tcgttttttt 0 0 77.70 54.15 23.55 Both lgI 36 27811443 27811371 Glu CTC ttacaataaa ctttttgtat 0 0 79.78 56.24 23.54 Both lgIX 36 5195873 5195801 Glu CTC tcgccactaa acgttttcct 0 0 79.78 56.24 23.54 Both lgV 6 2529344 2529416 Glu CTC tgtcatagca caattatttt 0 0 79.78 56.24 23.54 Both lgXIII 7 2429828 2429900 Glu CTC ataagcagaa cattttgttt 0 0 79.78 56.24 23.54 Both lgXIV 22 1271459 1271387 Glu CTC tgtcaaccaa attttgagtt 0 0 79.78 56.24 23.54 Both lgXVI 10 10231503 10231575 Glu CTC tcaacatcat actcttttgg 0 0 79.78 56.24 23.54 Both scaffold134 1 509565 509637 Glu CTC ctcacagcaa agttttagtt 0 0 79.78 56.24 23.54 Both scaffold14777 1 432 360 Glu CTC ttaccataaa cttttttttt 0 0 79.78 56.24 23.54 Both scaffold187 1 294485 294557 Glu CTC ttgtcagcaa ttttttctcc 0 0 79.78 56.24 23.54 Both scaffold57 7 996598 996526 Glu CTC gagaaacaaa tgattaccgt 0 0 79.78 56.24 23.54 Both lgIX 1 26052 26124 Glu TTC gggcaaatgt gggtattacg 0 0 39.98 18.56 21.42 Both scaffold2924 2 1527 1599 Glu TTC ttctaggatt ccaagtttgc 0 0 55.38 29.16 26.22 Both scaffold21940 1 673 601 Glu TTC gttgaatgtt ccatttaagg 0 0 58.29 37.05 21.24 Both scaffold7222 1 217 145 Glu TTC cgtcttgagc ccaagaacca 0 0 63.52 37.93 25.59 Both scaffold635 5 7106 7035 Glu TTC tggcttgttg ggtacgtgtt 0 0 65.98 40.49 25.49 Both lgI 20 20237416 20237487 Glu TTC tactaataaa ttaatttttg 0 0 72.60 50.65 21.95 Both lgII 42 2023179 2023108 Glu TTC gaaataagca tttttatcat 0 0 72.60 50.65 21.95 Both lgII 43 1982209 1982138 Glu TTC agcaaaagca tttttcacta 0 0 72.60 50.65 21.95 Both lgIX 34 5889663 5889592 Glu TTC cctcaacaaa ctttttattt 0 0 72.60 50.65 21.95 Both lgIX 6 3178486 3178557 Glu TTC agataaaaca tttttatttt 0 0 72.60 50.65 21.95 Both lgV 9 16125506 16125577 Glu TTC cgacaagatc ttttttacat 0 0 72.60 50.65 21.95 Both lgVII 9 10653325 10653254 Glu TTC aagtaaacat ttatttttag 0 0 72.60 50.65 21.95 Both lgXIII 3 1113137 1113208 Glu TTC gaatcaacat ctttttattc 0 0 72.60 50.65 21.95 Both lgXVIII 4 9393666 9393737 Glu TTC aaacaagtct ttgttttatg 0 0 72.60 50.65 21.95 Both lgXVIII 8 11882717 11882646 Glu TTC taacaagtat ttccttttgg 0 0 72.60 50.65 21.95 Both scaffold133 5 274199 274128 Glu TTC ttcccaatca ctttttttcc 0 0 72.60 50.65 21.95 Both scaffold41 1 1156111 1156040 Glu TTC tcacaataat ttcattttta 0 0 72.60 50.65 21.95 Both scaffold57 3 1639955 1639884 Glu TTC aaacaaaagt tgttttttat 0 0 72.60 50.65 21.95 Both   lgXI 11 13211377 13211447 Gly CCC gagctcgcaa gttgtttttc 0 0 68.61 36.02 32.59 Both lgXII 16 12356623 12356553 Gly CCC agatcaataa ttttccttta 0 0 68.61 36.02 32.59 Both lgXII 24 2142186 2142116 Gly CCC atgcaaacag ttgcctttgt 0 0 68.61 36.02 32.59 Both lgXIV 19 3660531 3660461 Gly CCC acaccaagaa ttgctgtttt 0 0 68.61 36.02 32.59 Both lgXIV 8 5954153 5954223 Gly CCC aacagcagaa tttatataca 0 0 68.61 36.02 32.59 Both lgXV 3 694800 694870 Gly CCC aatctaaaac tttttattcc 0 0 68.61 36.02 32.59 Both scaffold132 1 714730 714660 Gly CCC tggacaagca agttttggtg 0 0 68.61 36.02 32.59 Both lgIX 22 10131411 10131481 Gly GCC aaaaaaaaat caagttgatt 0 0 32.00 22.84 9.16 Eufind scaffold1007 1 1078 1149 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both scaffold297 1 31257 31328 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both scaffold438 1 36169 36098 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both lgII 10 8957397 8957467 Gly GCC tataaaagca agtgtttctt 0 0 63.64 43.57 20.07 Both lgXIII 18 2724340 2724270 Gly GCC tgtcaacaag aaagctattg 0 0 65.03 50.40 14.63 Eufind lgII 41 2653177 2653107 Gly GCC tcatcaaaac ttctaatttt 0 0 66.36 48.28 18.08 Both scaffold4449 1 2959 2889 Gly GCC gtatcaacaa cgtagagcaa 0 0 68.86 48.79 20.07 Both lgI 21 20715509 20715579 Gly GCC ataacaacag gatatttttt 0 0 71.56 51.49 20.07 Both lgII 29 11847976 11847906 Gly GCC atatcaacaa tggaggagca 0 0 71.56 51.49 20.07 Both lgIV 21 4897374 4897304 Gly GCC gtaataacaa gaacttttct 0 0 71.56 51.49 20.07 Both lgIV 5 3841826 3841896 Gly GCC tatcaaacag tttggttttt 0 0 71.56 51.49 20.07 Both lgIX 35 5433871 5433801 Gly GCC agatcaacaa agcattttta 0 0 71.56 51.49 20.07 Both lgXI 7 9287141 9287211 Gly GCC aatcaaccca tcagcatgat 0 0 71.56 51.49 20.07 Both lgXII 25 1990974 1990904 Gly GCC gtatcaacaa gagaagagca 0 0 71.56 51.49 20.07 Both lgXII 8 11597702 11597772 Gly GCC agttaaagag ttcccgagct 0 0 71.56 51.49 20.07 Both lgXII 9 11599859 11599929 Gly GCC tagtcaacaa ttcccaagct 0 0 71.56 51.49 20.07 Both lgXIII 11 12433421 12433351 Gly GCC gaatcagcaa ataacgagcg 0 0 71.56 51.49 20.07 Both lgXIX 3 11126934 11126864 Gly GCC gaatcaacaa aatcctgagc 0 0 71.56 51.49 20.07 Both lgXV 10 7276710 7276780 Gly GCC atttcaacaa ttcacaagct 0 0 71.56 51.49 20.07 Both lgXV 11 7295489 7295559 Gly GCC ttatcaacaa ttcacaagct 0 0 71.56 51.49 20.07 Both lgXVI 14 11760793 11760863 Gly GCC gtaacaagaa tttatatctg 0 0 71.56 51.49 20.07 Both scaffold1077 1 442 372 Gly GCC aattaaagag ttcccgagct 0 0 71.56 51.49 20.07 Both scaffold4449 2 1337 1267 Gly GCC gagtcaacaa gagaagagca 0 0 71.56 51.49 20.07 Both scaffold57 6 1071348 1071278 Gly GCC caagcatcag aaaatcgtgt 0 0 71.56 51.49 20.07 Both scaffold70 1 499794 499864 Gly GCC taccagcaag attgtttttc 0 0 71.56 51.49 20.07 Both scaffold773 1 6112 6182 Gly GCC ataccaacaa acaatttttc 0 0 71.56 51.49 20.07 Both scaffold13262 3 1155 1225 Gly GCC gcctgcagcg gttttggttt 0 0 82.25 63.27 18.98 Both scaffold3183 2 6700 6630 Gly TCC aagtaaccgg ccagcctacc 0 0 64.15 43.39 20.76 Both scaffold11214 3 1220 1290 Gly TCC gtcaatctgt ccagttggcg 0 0 66.40 50.39 16.01 Both lgXVIII 3 5484634 5484705 Gly TCC acatcagcag cttttgcatt 0 0 68.39 46.38 22.01 Both scaffold66 5 304012 303941 Gly TCC tactcaacga gtcttcttaa 0 0 70.48 48.46 22.02 Both lgVI 17 17115547 17115618 Gly TCC atttcagcaa tttttttcct 0 0 71.06 49.04 22.02 Both lgI 50 17604179 17604108 Gly TCC ggaataacaa ataacaattc 0 0 72.24 47.45 24.79 Both lgI 17 19038146 19038217 Gly TCC aaaacagcga acaatttttt 0 0 73.14 51.13 22.01 Both lgI 61 515464 515393 Gly TCC atcaacaaaa tttttacgtg 0 0 73.14 51.13 22.01 Both lgIII 29 12538772 12538701 Gly TCC gcaaccggaa aatttgaagt 0 0 73.14 51.13 22.01 Both lgIX 20 8591405 8591476 Gly TCC agcaaaccaa aagatttcat 0 0 73.14 51.13 22.01 Both lgIX 29 6909866 6909795 Gly TCC caagcaacaa atgcccttcc 0 0 73.14 51.13 22.01 Both lgIX 3 1168264 1168335 Gly TCC cattcaagaa ataattttta 0 0 73.14 51.13 22.01 Both lgXIX 1 114476 114547 Gly TCC atagacaact actatctatt 0 0 73.14 51.13 22.01 Both lgXIX 2 120027 120098 Gly TCC atagacaact actatctatt 0 0 73.14 51.13 22.01 Both lgXVI 21 4003599 4003528 Gly TCC ccacaagaaa tttttttctg 0 0 73.14 51.13 22.01 Both lgXVIII 2 5198709 5198780 Gly TCC tacaaaagca cttttgcatt 0 0 73.14 51.13 22.01 Both scaffold4003 1 167 96 Gly TCC atcaacaaaa tttttacttg 0 0 73.14 51.13 22.01 Both scaffold8400 1 1721 1792 Gly TCC catacaagaa ataattttta 0 0 73.14 51.13 22.01 Both lgI 6 7122527 7122598 Gly TCC ttagcgaaag agtttttctt 0 0 74.33 49.53 24.80 Both lgVI 28 10640423 10640352 Gly TCC tccggcgaca ttcttatttt 0 0 74.33 49.53 24.80 Both lgXV 8 6177389 6177460 Gly TCC agcaacaatc attttgcaga 0 0 74.33 49.53 24.80 Both   lgXIV 7 5267615 5267681 His GTG ttacatcgaa ttttacctct 0 0 34.05 12.93 21.12 Eufind scaffold431 1 37968 38041 His GTG gggggtaggg caaaaggaga 0 0 50.71 32.92 17.79 Both scaffold18642 1 151 224 His GTG agtattaggg catgaaccct 0 0 53.21 31.72 21.49 Both scaffold3402 2 764 691 His GTG agtattaggg catgaaccct 0 0 53.21 31.72 21.49 Both lgVIII 31 4877094 4877023 His GTG tcagcatctc tccggttcaa 0 0 56.89 34.96 21.93 Both scaffold1591 1 5046 4975 His GTG tcagcatctc tccggttcaa 0 0 56.89 34.96 21.93 Both lgVII 4 11164433 11164504 His GTG tcacagtaaa tttttatttt 0 0 62.38 35.43 26.95 Both lgVIII 37 2718108 2718037 His GTG cttacaacct ctactacttt 0 0 62.38 35.43 26.95 Both lgVIII 39 2153120 2153049 His GTG gaaacatgta ctaagcttgt 0 0 62.38 35.43 26.95 Both lgX 16 18322129 18322200 His GTG ttgttatcta cttaaataca 0 0 62.38 35.43 26.95 Both lgX 19 18905308 18905379 His GTG gagtaatcga ctaaactttt 0 0 62.38 35.43 26.95 Both lgX 28 18085014 18084943 His GTG cagacagctt gtcataaact 0 0 62.38 35.43 26.95 Both lgI 28 26235527 26235598 His GTG cgatcaccta aatgtttccg 0 0 63.70 36.75 26.95 Both lgIII 17 16219617 16219688 His GTG gtatcacctt tcattctgaa 0 0 63.70 36.75 26.95 Both lgVIII 6 2926896 2926967 His GTG gtgtcatctt cattttttaa 0 0 63.70 36.75 26.95 Both lgXI 3 263134 263205 His GTG tcgcaacaaa cgtatagtta 0 0 63.70 36.75 26.95 Both scaffold57 5 1225716 1225645 His GTG acagcataaa aaatattttt 0 0 63.70 36.75 26.95 Both scaffold9629 1 438 366 His GTG ttcttctacg ccaaataaaa 0 0 66.26 42.37 23.89 Both scaffold9629 2 106 34 His GTG tgcttcaacg ccaaacaaaa 0 0 66.26 42.37 23.89 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgXVI 13 11545045 11545118 Ile AAT ctcagcaact ttttatattt 0 0 76.24 55.09 21.15 Both scaffold57 8 565417 565344 Ile AAT cagatgtatt ttttattttc 0 0 79.79 57.07 22.72 Both lgV 20 4055620 4055547 Ile AAT ctaataaata atctaaatat 0 0 81.44 58.72 22.72 Both scaffold5338 2 2801 2874 Ile AAT tagcatcact ttcttatgcc 0 0 82.79 62.12 20.67 Both lgII 20 18488179 18488252 Ile AAT actacaaaat ccattttttg 0 0 83.89 61.17 22.72 Both lgIV 11 14015293 14015366 Ile AAT atcaacgaat attagtattt 0 0 83.89 61.17 22.72 Both lgIX 30 6637920 6637847 Ile AAT aacacaactt taattgtaac 0 0 83.89 61.17 22.72 Both lgIX 31 6636645 6636572 Ile AAT aacataactt taaatgtaac 0 0 83.89 61.17 22.72 Both lgIX 44 3483673 3483600 Ile AAT gatatcaaat atcattttta 0 0 83.89 61.17 22.72 Both lgIX 9 3655642 3655715 Ile AAT aatacaaggt ggatttttag 0 0 83.89 61.17 22.72 Both lgVII 24 164867 164794 Ile AAT gtgttgtaac atcagttatt 0 0 83.89 61.17 22.72 Both lgVIII 27 7378926 7378853 Ile AAT accaccaatt tgacttttta 0 0 83.89 61.17 22.72 Both lgVIII 3 1530826 1530899 Ile AAT actatcaact ttctattttt 0 0 83.89 61.17 22.72 Both lgX 25 19548551 19548478 Ile AAT aacatgaatt tgattctgtt 0 0 83.89 61.17 22.72 Both lgX 9 12880815 12880888 Ile AAT acttcgacat taattaagta 0 0 83.89 61.17 22.72 Both lgXI 20 8635419 8635346 Ile AAT tgtcagtcgt gtaatttata 0 0 83.89 61.17 22.72 Both lgXII 3 2205964 2206037 Ile AAT gatgtcaact tgtcttcatt 0 0 83.89 61.17 22.72 Both lgXIV 12 8923612 8923539 Ile AAT ccatcggatt tttatattgt 0 0 83.89 61.17 22.72 Both lgXVI 24 77935 77862 Ile AAT tccagcatct attttaacat 0 0 83.89 61.17 22.72 Both lgXVII 1 240712 240785 Ile AAT atgtcaacaa tttgtttttt 0 0 83.89 61.17 22.72 Both scaffold155 1 244425 244352 Ile AAT gaatgcaaat ccaattaatt 0 0 83.89 61.17 22.72 Both scaffold10221 1 1096 1023 Ile AAT ccatcggatt tttatattgt 0 0 85.07 59.58 25.49 Both lgIII 21 16007640 16007558 Ile AAT actaactatc tatgatggcc 16007603 16007595 23.59 16.16 7.43 Eufind scaffold451 3 8448 8386 Ile GAT gactctcttt ctttgaacgt 0 0 33.75 22.87 10.88 Eufind scaffold451 4 5056 4994 Ile GAT gactctcttt ctttgaacgt 0 0 33.75 22.87 10.88 Eufind scaffold653 1 14581 14643 Ile GAT gactctcttt ctttgaacgt 0 0 33.75 22.87 10.88 Eufind lgXV 7 5958840 5958911 Ile GAT tactcaaatt tggttattac 0 0 54.13 36.39 17.74 Both scaffold7095 1 1122 1049 Ile GAT tgcgtggact ccaagattcc 0 0 70.28 46.74 23.54 Both lgXVI 19 6670573 6670502 Ile TAT gacttgttca cccttgatat 0 0 34.51 12.81 21.70 Eufind lgI 32 30788902 30788975 Ile TAT agaaaaacag ccgcttctgt 0 0 85.40 69.82 15.58 Both lgI 45 20435533 20435460 Ile TAT tacgcgtgtt tctctattct 0 0 85.40 69.82 15.58 Both lgIX 14 5726630 5726703 Ile TAT tcagaacaca ttctgtttaa 0 0 85.40 69.82 15.58 Both lgVI 32 5279528 5279455 Ile TAT gaagcatcgt atgtttctga 0 0 85.40 69.82 15.58 Both lgXI 17 9546042 9545969 Ile TAT atactataat ttagtattag 0 0 85.40 69.82 15.58 Both lgXI 6 7591906 7591979 Ile TAT gcagcaacaa tctctctctt 0 0 85.40 69.82 15.58 Both scaffold164 1 179658 179731 Ile TAT gtaactgaac acacaacata 0 0 85.40 69.82 15.58 Both scaffold9690 1 1023 1096 Ile TAT gaagcatcgt atgtttctga 0 0 85.40 69.82 15.58 Both scaffold15441 3 426 334 Ile TAT aggctccagg cagctggctc 388 370 62.87 37.81 25.06 Both   lgXII 6 11420608 11420688 Leu AAG gaaacggcta ttatatatat 0 0 68.97 39.39 29.58 Both lgI 24 24075874 24075954 Leu AAG ttagcatcag tttctgtttt 0 0 69.68 40.32 29.36 Both lgII 30 11552646 11552566 Leu AAG gtcaacaaat tttctttttc 0 0 69.68 40.32 29.36 Both lgV 22 2041505 2041425 Leu AAG aaatcgacaa cgcatctatt 0 0 69.68 40.32 29.36 Both lgV 23 1974498 1974418 Leu AAG gccaacatgt tgattaaaat 0 0 69.68 40.32 29.36 Both lgVI 7 7243477 7243557 Leu AAG gacaacaacg acacataaat 0 0 69.68 40.32 29.36 Both lgVII 12 5243168 5243088 Leu AAG taataaacat gcaacgtttt 0 0 69.68 40.32 29.36 Both lgVII 13 5237036 5236956 Leu AAG tactaaacat gcaacatttt 0 0 69.68 40.32 29.36 Both lgVII 14 5068725 5068645 Leu AAG acaacaacga aatccaattt 0 0 69.68 40.32 29.36 Both lgXIV 3 2079659 2079739 Leu AAG atcaaaagat tttcttcttt 0 0 69.68 40.32 29.36 Both lgXVI 15 11794134 11794214 Leu AAG gttaacaaga aatcattttt 0 0 69.68 40.32 29.36 Both lgXVII 2 1200936 1201016 Leu AAG ggcagccatg tgtttttttt 0 0 69.68 40.32 29.36 Both lgXVIII 11 8090053 8089973 Leu AAG acgctgtctt aagagcataa 0 0 69.68 40.32 29.36 Both scaffold66 6 259244 259164 Leu AAG catcaacaat ttattattat 0 0 69.68 40.32 29.36 Both scaffold7153 1 925 845 Leu AAG gtcgtcaaat ttctcttttc 0 0 69.68 40.32 29.36 Both scaffold15838 1 1133 1215 Leu AAG attaatcatt tatgatggcc 1170 1178 26.29 19.77 6.52 Eufind lgVII 6 11709412 11709329 Leu AAG tagaatcatc atgatggcta 11709375 11709367 25.51 16.39 9.12 Eufind lgXI 9 12042010 12042092 Leu AAG tttaactata ttatatgatg 12042047 12042055 32.01 24.37 7.64 Eufind scaffold1228 1 12795 12714 Leu AAG cggatcatct tatgatggcc 12759 12754 22.96 15.74 7.22 Eufind lgIII 20 16178059 16177978 Leu AAG agccgatgaa tatgatggcc 16178023 16178015 22.53 17.51 5.02 Eufind scaffold8505 1 140 221 Leu AAG caaaccatct tatgatggcc 176 184 24.85 14.85 10.00 Eufind lgI 40 26305932 26305850 Leu AAG cctaactatc tatgatggcc 26305895 26305887 31.83 24.76 7.07 Eufind lgI 31 30741679 30741761 Leu AAG attaatttag tatgatggtc 30741716 30741724 28.55 21.70 6.85 Eufind scaffold41 2 315475 315393 Leu AAG tttaattatc tatgatggtc 315438 315430 21.93 11.29 10.64 Eufind lgVII 18 3390155 3390073 Leu AAG attaaccatc tatgatggcc 3390118 3390113 31.26 10.15 21.11 Eufind scaffold168 1 343316 343235 Leu AAG ggaaccatct tatgatggcc 343280 343275 21.26 13.07 8.19 Eufind lgXV 5 3469836 3469917 Leu AAG ttaattattt tatgatggcc 3469872 3469877 21.71 13.48 8.23 Eufind lgXII 1 430368 430448 Leu AAG ctaaccatct tatgatggcc 430403 430412 20.67 13.49 7.18 Eufind lgXVII 6 4376098 4376015 Leu AAG cttaaccatc atgatggcca 4376061 4376054 23.06 15.40 7.66 Eufind scaffold148 1 49313 49395 Leu AAG agaaaccatc tataatagcc 49350 49358 29.69 13.06 16.63 Eufind lgXV 21 5308012 5307929 Leu AAG cgcaatcatc atgatggcca 5307975 5307970 24.52 11.51 13.01 Eufind scaffold18780 1 632 551 Leu AAG ggaactatct tatgatggcc 596 591 21.26 13.07 8.19 Eufind lgXI 4 610614 610696 Leu AAG tttaaccatc atgatcgcta 610651 610659 23.26 17.02 6.24 Eufind scaffold2929 1 6070 6155 Leu AAG tataaaccat tgatggccac 6108 6113 20.73 10.26 10.47 Eufind scaffold258 1 76913 76995 Leu AAG tgaaaccatc tatgatggcc 76950 76955 28.57 22.48 6.09 Eufind scaffold40 4 837427 837346 Leu AAG tgaaccatct tatgatggtc 837391 837386 23.26 16.36 6.90 Eufind scaffold40 3 855796 855715 Leu AAG tgaaccatct tatgatggtc 855760 855755 23.26 16.36 6.90 Eufind lgXVI 8 8937243 8937325 Leu AAG gttaaccatc tattgatggc 8937280 8937285 23.98 16.81 7.17 Eufind lgI 62 92436 92355 Leu AAG ttaaccatct tatgatggcc 92400 92395 21.07 12.84 8.23 Eufind lgI 11 9630899 9630977 Leu AAG tccatctcat catatgatgg 9630934 9630942 28.07 16.09 11.98 Eufind lgXVIII 5 9816188 9816270 Leu AAG gataaccata tatgataacc 9816225 9816230 21.56 10.43 11.13 Eufind lgXIX 4 9976926 9976844 Leu AAG actaaccatc tattgataac 9976889 9976881 20.58 12.01 8.57 Eufind lgI 3 5613338 5613418 Leu CAA ctttcaagat gagaatgctc 0 0 26.28 10.49 15.79 Eufind lgIX 4 2135743 2135823 Leu CAA cttgcaaaat taatattgag 0 0 33.99 10.85 23.14 tRNAscan scaffold12909 1 1198 1118 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold14091 1 874 794 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold17732 1 802 882 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold19369 1 838 758 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both scaffold19483 1 240 320 Leu CAA ctttcaagat taatattgag 0 0 52.25 29.24 23.01 Both lgXII 13 12636693 12636776 Leu CAA actacaaaag tatgacgttt 0 0 66.13 41.95 24.18 Both lgVII 8 10977428 10977345 Leu CAA gaagcatcac tttttctact 0 0 70.52 44.98 25.54 Both lgVI 14 15143750 15143833 Leu CAA atcataagag tccagttttt 0 0 70.82 44.46 26.36 Both lgI 53 7963229 7963146 Leu CAA aacaaggagt gttttgcacc 0 0 71.45 44.32 27.13 Both lgIII 36 6988157 6988074 Leu CAA ttacaaaatt ttatttttga 0 0 71.45 44.32 27.13 Both lgI 9 8358314 8358397 Leu CAA gaacaacagc acttaagttt 0 0 73.19 44.49 28.70 Both lgII 15 12646515 12646598 Leu CAA aaacagcaag atcttttcga 0 0 73.19 44.49 28.70 Both lgII 4 2022973 2023056 Leu CAA agcatcggac ttttctctct 0 0 73.19 44.49 28.70 Both lgIII 12 12512636 12512719 Leu CAA agcatccaac ttttattatt 0 0 73.19 44.49 28.70 Both lgIII 33 11506309 11506226 Leu CAA tatcaaatat ctctgatatt 0 0 73.19 44.49 28.70 Both lgIII 9 11784943 11785026 Leu CAA gtcgtatagt atttttcctt 0 0 73.19 44.49 28.70 Both lgV 17 16095043 16094960 Leu CAA aaaaccgaag tttctttaaa 0 0 73.19 44.49 28.70 Both lgXII 22 4637314 4637234 Leu CAG aatcagcaat atatgttttt 0 0 66.12 37.42 28.70 Both lgIV 6 5892782 5892862 Leu CAG gttaacaaga tatccttttt 0 0 68.57 39.87 28.70 Both lgVI 35 987496 987416 Leu CAG cacaacaaat ttgtttttta 0 0 68.57 39.87 28.70 Both lgXV 4 3065499 3065579 Leu CAG aaacaataat atatattttt 0 0 68.57 39.87 28.70 Both lgXVI 2 266738 266818 Leu CAG ggcaacaaag tttctttttt 0 0 68.57 39.87 28.70 Both lgXVI 3 266901 266981 Leu CAG ggcaacaaag tttatgtttt 0 0 68.57 39.87 28.70 Both scaffold28 3 3088962 3088880 Leu TAA gaccacgtta tttttcttta 0 0 26.52 14.33 12.19 Both scaffold1382 1 230 148 Leu TAA ggcttgccgt ccaggctcta 0 0 50.64 17.23 33.41 Eufind lgI 54 6895456 6895374 Leu TAA atcaccatca atttgaagag 0 0 64.80 28.31 36.49 Both lgVII 19 2951429 2951347 Leu TAA attcgcatca ccaccttttt 0 0 65.18 27.10 38.08 Both lgVIII 2 1241345 1241427 Leu TAA caacgtagaa cttctttcat 0 0 65.18 27.10 38.08 Both scaffold11547 1 1476 1394 Leu TAA attcgcatca ccaccttctt 0 0 65.18 27.10 38.08 Both scaffold6008 1 205 287 Leu TAA attcgcatca ccaccttttt 0 0 65.18 27.10 38.08 Both scaffold124 2 306372 306454 Leu TAA gaaacaaaca tttttattta 0 0 66.37 29.51 36.86 Both scaffold66 2 303782 303864 Leu TAA gctaaatgtc atttggtgat 0 0 69.55 35.50 34.05 Both lgIX 49 1168481 1168399 Leu TAA tattcaacga gttgacatta 0 0 74.09 40.04 34.05 Both scaffold1199 1 3452 3531 Leu TAG ttttgagcaa taacattttt 0 0 55.62 26.78 28.84 Both scaffold13864 1 170 249 Leu TAG ttttgagcaa taacattttt 0 0 55.62 26.78 28.84 Both lgII 3 642629 642708 Leu TAG tgatcatcaa tttttttttc 0 0 68.72 40.52 28.20 Both lgIX 7 3530411 3530490 Leu TAG atgaatagaa aatacttcct 0 0 68.72 40.52 28.20 Both lgV 16 17368803 17368724 Leu TAG aagagtacaa gatttatttt 0 0 68.72 40.52 28.20 Both lgXII 4 2554466 2554545 Leu TAG aagcataaaa atattcttta 0 0 68.72 40.52 28.20 Both lgXV 2 464026 464105 Leu TAG actcacaaat cttttcacat 0 0 68.72 40.52 28.20 Both lgXV 6 5541678 5541757 Leu TAG aacaacaagt atgtttcgat 0 0 68.72 40.52 28.20 Both scaffold130 1 60292 60371 Leu TAG aacatcaagt attttcaatc 0 0 68.72 40.52 28.20 Both scaffold3963 1 4138 4059 Leu TAG aacagtacaa gatttatttt 0 0 68.72 40.52 28.20 Both scaffold3963 2 2720 2641 Leu TAG taacattcaa tatttatttt 0 0 68.72 40.52 28.20 Both scaffold12679 5 367 286 Leu TAG acgttcagcg gttccctttt 0 0 72.56 45.67 26.89 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgXIX 6 2257824 2257753 Lys CTT gaacgctata ttctatgttt 0 0 79.91 59.31 20.60 Both scaffold156 1 331424 331495 Lys CTT gaacgctata ttctatgttt 0 0 79.91 59.31 20.60 Both lgXIV 21 1410886 1410814 Lys CTT accctcacaa ctctctgtct 0 0 81.60 60.95 20.65 Both lgII 31 11038168 11038096 Lys CTT cttccatcaa tttccgtttt 0 0 84.38 62.40 21.98 Both lgII 8 6842074 6842146 Lys CTT tcaacaacaa ataataagtt 0 0 84.38 62.40 21.98 Both lgIII 25 14714367 14714295 Lys CTT acacaaccaa aattggtttt 0 0 84.38 62.40 21.98 Both lgV 19 9751157 9751085 Lys CTT tcaacaagaa atagctatat 0 0 84.38 62.40 21.98 Both lgVI 4 5658489 5658561 Lys CTT gagtcaggta ttaattttgt 0 0 84.38 62.40 21.98 Both lgVII 1 5846137 5846209 Lys CTT ccgtcaacaa tttgtattgt 0 0 84.38 62.40 21.98 Both lgVIII 13 11956952 11957024 Lys CTT acaacaacga ttttaacttt 0 0 84.38 62.40 21.98 Both lgVIII 33 4466952 4466880 Lys CTT ccctcaagaa atttcttttt 0 0 84.38 62.40 21.98 Both lgVIII 7 3067529 3067601 Lys CTT ttaacagcaa tttgtgtgtt 0 0 84.38 62.40 21.98 Both lgX 13 16569079 16569151 Lys CTT tgatcaggaa catggttttt 0 0 84.38 62.40 21.98 Both lgX 2 5985266 5985338 Lys CTT acgtcaacaa ttttaatttc 0 0 84.38 62.40 21.98 Both lgX 21 19442350 19442422 Lys CTT agcataaaaa tttgtttgtt 0 0 84.38 62.40 21.98 Both lgXVIII 10 8582418 8582346 Lys CTT acatcaaaaa ctttctctag 0 0 84.38 62.40 21.98 Both scaffold127 1 105457 105529 Lys CTT aagacaacaa cattcttttt 0 0 84.38 62.40 21.98 Both lgV 4 2388107 2388179 Lys CTT tcaacaacaa ttttgatttt 0 0 86.03 64.06 21.97 Both lgIV 24 3089112 3089041 Lys TTT tagacggtaa ttcttttttt 0 0 72.48 57.29 15.19 Both scaffold838 1 6206 6278 Lys TTT atctttttta accctacctt 0 0 74.23 58.49 15.74 Both lgXII 17 11161309 11161238 Lys TTT taatagaaaa ttctagtttt 0 0 74.80 57.47 17.33 Both lgXII 18 11159902 11159831 Lys TTT taatagaaaa ttctagtttt 0 0 74.80 57.47 17.33 Both scaffold5338 4 2476 2404 Lys TTT ctcgtgtcga aggctaccct 0 0 80.75 56.46 24.29 Both lgVIII 17 12589153 12589082 Lys TTT tttccatcta ctcgttgtat 0 0 84.47 59.91 24.56 Both lgXVI 18 10926220 10926149 Lys TTT catacagcca tcctttgtca 0 0 84.47 59.91 24.56 Both scaffold7801 1 1220 1291 Lys TTT taaacagcta tcctttgtca 0 0 84.47 59.91 24.56 Both lgII 23 23284302 23284374 Lys TTT tgtcgaacgc gttttttgac 0 0 85.28 62.04 23.24 Both lgI 15 17661858 17661930 Lys TTT gtaaacagaa attatttgtt 0 0 88.06 63.50 24.56 Both lgI 33 34253032 34253104 Lys TTT gaacaagcaa tagcataaaa 0 0 88.06 63.50 24.56 Both lgIX 27 8658031 8657959 Lys TTT aacagcaaaa actatgactt 0 0 88.06 63.50 24.56 Both lgVIII 10 5441544 5441616 Lys TTT tcaaccgaac attaagttaa 0 0 88.06 63.50 24.56 Both lgVIII 8 3129472 3129544 Lys TTT attcaacgta attttgttgt 0 0 88.06 63.50 24.56 Both lgX 22 19501567 19501639 Lys TTT cattcaagat gtgatatgat 0 0 88.06 63.50 24.56 Both lgX 30 15352635 15352563 Lys TTT ttacagaaat ttttgctgat 0 0 88.06 63.50 24.56 Both lgXI 12 13798334 13798262 Lys TTT tttcagacaa aggcaattct 0 0 88.06 63.50 24.56 Both lgXV 16 8700071 8699999 Lys TTT gaaatgtaaa agactttatt 0 0 88.06 63.50 24.56 Both scaffold200 1 248938 249010 Lys TTT aaaacgtaca actgttaact 0 0 88.06 63.50 24.56 Both   lgIV 18 8600964 8600891 Met CAT tccccgctaa tgccaatgga 0 0 39.35 20.40 18.95 Eufind scaffold18395 1 715 643 Met CAT ataaatttta cacttaaaaa 0 0 42.70 18.61 24.09 Both scaffold15561 1 962 1034 Met CAT aagggtaaga aagaacgtcg 0 0 46.45 33.33 13.12 Both scaffold371 1 43648 43576 Met CAT aagggtaaga aagaacgtcg 0 0 46.45 33.33 13.12 Both scaffold10589 3 263 192 Met CAT aactttacga attaatcaac 0 0 48.04 22.06 25.98 Both lgXVI 17 11891171 11891099 Met CAT tacccactaa tgccaatgtg 0 0 48.97 28.66 20.31 Eufind scaffold286 1 14073 14146 Met CAT agatccgtag ccacatcatg 0 0 54.37 32.06 22.31 Both scaffold451 1 31453 31526 Met CAT agatccgtag ccacatcatg 0 0 54.37 32.06 22.31 Both scaffold451 2 33046 33119 Met CAT agatccgtag ccacatcatg 0 0 54.37 32.06 22.31 Both scaffold38224 1 426 498 Met CAT attctaaatt taacttatta 0 0 55.75 31.54 24.21 Both scaffold760 1 9936 10008 Met CAT attctaaatg taacttatta 0 0 55.75 31.54 24.21 Both scaffold760 2 16479 16551 Met CAT attctaaatg taacttatta 0 0 55.75 31.54 24.21 Both scaffold11678 1 1094 1167 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold11770 1 274 201 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold17345 1 440 367 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both scaffold286 2 53670 53597 Met CAT tccccgctaa cgccaatggg 0 0 62.47 37.59 24.88 Both lgIII 16 15885290 15885361 Met CAT taaatcaacc gccagagtgg 0 0 67.87 40.24 27.63 Both lgXI 13 13346876 13346805 Met CAT gtattcaaca attgagtagc 0 0 67.87 40.24 27.63 Both lgXI 14 13341806 13341735 Met CAT gtattcaaca gttgagtagc 0 0 67.87 40.24 27.63 Both lgXI 15 13334974 13334903 Met CAT gtattcaaca attgagtagc 0 0 67.87 40.24 27.63 Both lgXII 26 971817 971746 Met CAT tgttcaacaa aaaagagtgg 0 0 67.87 40.24 27.63 Both lgXIII 10 8083957 8084028 Met CAT cattttaaca gaagagtagc 0 0 67.87 40.24 27.63 Both lgXIII 17 8078929 8078858 Met CAT agaaacaaga gaagagtagc 0 0 67.87 40.24 27.63 Both scaffold197 1 239649 239720 Met CAT ctatcaacat aaaagagtag 0 0 67.87 40.24 27.63 Both lgI 4 6971347 6971418 Met CAT tgtacagtgg acagagtagc 0 0 68.81 41.37 27.44 Both lgVIII 21 11451374 11451303 Met CAT gatacacaaa agagaaaggc 0 0 68.81 41.37 27.44 Both scaffold1593 1 4591 4520 Met CAT gatacacaaa agagaaaggc 0 0 68.81 41.37 27.44 Both lgXII 11 11892549 11892620 Met CAT aagtcaacgg cttttgtttt 0 0 69.15 42.39 26.76 Both lgXV 13 7641479 7641550 Met CAT gcaacaacaa ttttttattt 0 0 69.15 42.39 26.76 Both scaffold12679 4 730 658 Met CAT caagacaaga aagcttttgc 0 0 72.82 53.56 19.26 Both lgV 1 1104017 1104101 Met CAT aatcaagaaa atattttgtt 1104055 1104065 61.15 41.05 20.10 Both lgV 26 1344321 1344237 Met CAT gaaacaggaa attttttttt 1344283 1344273 61.15 41.05 20.10 Both lgIII 22 15734658 15734574 Met CAT tctaccaaat agtgagatct 15734620 15734610 61.15 41.05 20.10 Both scaffold29 5 2134392 2134308 Met CAT atgccatgat tttcttttct 2134354 2134344 61.15 41.05 20.10 Both lgII 24 23931365 23931281 Met CAT aacaacattt ccattatttt 23931327 23931317 61.15 41.05 20.10 Both lgI 41 25566810 25566726 Met CAT cagacatcat ttttataatt 25566772 25566762 61.15 41.05 20.10 Both lgXV 1 293778 293863 Met CAT gtcaaaaggt taaaatcatt 293816 293827 61.84 41.73 20.11 Both lgXII 23 3041720 3041636 Met CAT ggaacaacac ttatatattt 3041682 3041672 61.71 41.61 20.10 Both lgVII 17 3920222 3920138 Met CAT ctaacgtaaa atccttttct 3920184 3920174 61.15 41.05 20.10 Both lgIX 13 5594503 5594588 Met CAT gtcacaagat tgaaatgttt 5594541 5594552 62.48 42.37 20.11 Both scaffold2803 1 5884 5800 Met CAT tatcaacaaa atattttgtt 5846 5836 61.15 41.05 20.10 Both lgII 36 7029471 7029387 Met CAT gagccatcat aatgggtttt 7029433 7029423 61.15 41.05 20.10 Both scaffold118 1 80273 80357 Met CAT attatcaaaa ttctttttag 80311 80321 61.15 41.05 20.10 Both lgV 7 9404465 9404549 Met CAT gatccattca attgtttttt 9404503 9404513 61.15 41.05 20.10 Both   lgIII 28 14083968 14083887 Phe AAA attaactatt tatgatagtc 14083931 14083924 30.34 24.07 6.27 Eufind lgVII 21 2076248 2076166 Phe AAA tgtaactatt tatgatggct 2076211 2076203 27.01 20.60 6.41 Eufind scaffold28 5 695004 694922 Phe AAA aagaaccatc tatgatgact 694967 694961 24.43 12.08 12.35 Eufind lgX 24 20205861 20205789 Phe GAA gaacattaaa ttttaatcat 0 0 35.89 24.76 11.13 Both scaffold635 2 24175 24248 Phe GAA taggaaagtg ggcgaagggt 0 0 55.58 39.05 16.53 Both lgI 7 7501437 7501509 Phe GAA taacacagtt tgcataactt 0 0 77.43 54.21 23.22 Both lgII 17 16588929 16589001 Phe GAA catacaagta ttgttttttg 0 0 77.43 54.21 23.22 Both lgII 18 16769390 16769462 Phe GAA atgccaaccg tttttctttt 0 0 77.43 54.21 23.22 Both lgIII 30 12244077 12244005 Phe GAA gagtacaact taaaagtttt 0 0 77.43 54.21 23.22 Both lgVI 16 16435858 16435930 Phe GAA gtcatcaaca cttgactttt 0 0 77.43 54.21 23.22 Both lgVII 7 11408073 11408001 Phe GAA gtctcatctt tttttttaag 0 0 77.43 54.21 23.22 Both lgXI 16 12069895 12069823 Phe GAA aaaacaagag ttatttttta 0 0 77.43 54.21 23.22 Both lgXI 8 11289783 11289855 Phe GAA gaaggcaaaa ttttatattc 0 0 77.43 54.21 23.22 Both lgXIII 21 372059 371987 Phe GAA gagcgtgaag ttcttcttct 0 0 77.43 54.21 23.22 Both lgXIV 15 4970256 4970184 Phe GAA tgaccagata tttatatttt 0 0 77.43 54.21 23.22 Both lgXIV 16 4869579 4869507 Phe GAA cagacaacta tgttcttcta 0 0 77.43 54.21 23.22 Both lgXVI 25 21467 21395 Phe GAA agccatcaca cttacctttt 0 0 77.43 54.21 23.22 Both lgXVIII 1 4689000 4689072 Phe GAA cgaagcaaaa ttttattttt 0 0 77.43 54.21 23.22 Both scaffold11293 1 508 436 Phe GAA gagcgtgaag ttcttcttct 0 0 77.43 54.21 23.22 Both scaffold131 1 272759 272687 Phe GAA caacaaacag tttctctctt 0 0 77.43 54.21 23.22 Both scaffold142 1 222421 222493 Phe GAA ttcagtggct cttttttctc 0 0 77.43 54.21 23.22 Both scaffold142 2 222030 221958 Phe GAA ccctgtggct cttctttttc 0 0 77.43 54.21 23.22 Both scaffold20552 1 148 76 Phe GAA taacacagtt tgcataactt 0 0 77.43 54.21 23.22 Both scaffold57 1 1075081 1075153 Phe GAA ttcacatctt attttcatcc 0 0 77.43 54.21 23.22 Both scaffold5338 3 2643 2571 Phe GAA gcatcatccg gttgcctcgc 0 0 78.36 55.42 22.94 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgIX 39 4790612 4790541 Pro AGG ctcggcaatt ttcacatgta 0 0 64.76 42.47 22.29 Both lgII 19 17550706 17550777 Pro AGG atgataacaa tcttctctgt 0 0 71.75 43.88 27.87 Both lgVIII 14 13544213 13544142 Pro AGG gatcaacaaa cttctttttc 0 0 71.75 43.88 27.87 Both lgVIII 36 2954037 2953966 Pro AGG attcacatcc atgaatttaa 0 0 71.75 43.88 27.87 Both lgVIII 38 2670163 2670092 Pro AGG atacgcaacc aaaactagtt 0 0 71.75 43.88 27.87 Both lgVIII 9 3490847 3490918 Pro AGG ttttcgaatt gttgctgttc 0 0 71.75 43.88 27.87 Both lgX 17 18382467 18382538 Pro AGG cctcacaaga agttttattg 0 0 71.75 43.88 27.87 Both lgX 18 18845497 18845568 Pro AGG aaggccagaa ttagttcttt 0 0 71.75 43.88 27.87 Both lgX 29 17351041 17350970 Pro AGG ttatcaaaat catcgtcgaa 0 0 71.75 43.88 27.87 Both lgXIII 5 1951787 1951858 Pro AGG tgacaggaat cttctttttg 0 0 71.75 43.88 27.87 Both lgXIV 13 6357893 6357822 Pro AGG acaacaaaca ttatcctttt 0 0 71.75 43.88 27.87 Both lgXIV 14 6240893 6240822 Pro AGG gacaacaaaa ttatcctttt 0 0 71.75 43.88 27.87 Both lgXVI 9 9593099 9593170 Pro AGG agaacacgaa ctgaaccaca 0 0 71.75 43.88 27.87 Both scaffold2434 1 7490 7561 Pro AGG ccacacaaga agttttatgt 0 0 71.75 43.88 27.87 Both scaffold70 7 1072004 1071933 Pro AGG cactaacaac ttttattgat 0 0 71.75 43.88 27.87 Both scaffold20723 3 466 537 Pro AGG gtgcagcacg ttccccgctc 0 0 74.80 51.55 23.25 Both scaffold5338 5 591 520 Pro AGG ccatcgccac gacactcttt 0 0 74.80 51.55 23.25 Both scaffold15441 2 1048 1119 Pro AGG gcccaccgct ttgcttttgc 0 0 75.92 53.85 22.07 Both scaffold10768 1 435 508 Pro CGG aaaaaagcaa ccatttctgg 0 0 61.72 31.78 29.94 Both scaffold133 4 619829 619758 Pro CGG agagcatgtt ttttttttta 0 0 69.81 45.03 24.78 Both lgVI 12 13934425 13934496 Pro CGG taaatgcaaa tttaaattat 0 0 74.11 46.34 27.77 Both lgXIII 2 728548 728619 Pro CGG gaatcaaaga tggtattaat 0 0 74.11 46.34 27.77 Both lgXVI 7 5801266 5801337 Pro CGG caaatgtcgt tctttgatat 0 0 74.11 46.34 27.77 Both lgIII 37 6011956 6011883 Pro TGG accaattgag tttcgattgt 0 0 30.35 13.25 17.10 Eufind lgIX 42 4787158 4787087 Pro TGG cactcacaaa gttagaatct 0 0 47.81 27.66 20.15 Eufind lgIII 1 20242 20316 Pro TGG gggggtgaga ccataacctt 0 0 50.18 22.39 27.79 Both lgI 39 27288337 27288266 Pro TGG ggatcataga gttggaatca 0 0 50.34 31.49 18.85 Eufind lgIII 35 8559308 8559235 Pro TGG accaattgaa cttattattt 0 0 53.45 28.43 25.02 Both scaffold376 1 27506 27432 Pro TGG gggggtgaga ccataacctt 0 0 54.34 25.42 28.92 Both scaffold422 1 1173 1099 Pro TGG gggggtgaga ccataacctt 0 0 54.34 25.42 28.92 Both scaffold635 3 24501 24575 Pro TGG gggggtgaga ccaaggaagg 0 0 54.34 25.42 28.92 Both scaffold2835 1 7030 6957 Pro TGG accaattgaa cttattactt 0 0 54.91 29.85 25.06 Both lgXV 14 8433367 8433438 Pro TGG ttcgtaaatt aacttctaca 0 0 69.35 42.46 26.89 Both scaffold15441 1 541 612 Pro TGG ccccagcgca aggcttttag 0 0 70.51 53.49 17.02 Both lgIX 38 4791142 4791071 Pro TGG cacatcaaac aaatctgtct 0 0 73.53 45.49 28.04 Both lgI 23 21875305 21875376 Pro TGG aacgacaaga agcatttctt 0 0 73.73 45.85 27.88 Both lgI 27 24854341 24854412 Pro TGG ttaataaaac tgctatacgt 0 0 73.73 45.85 27.88 Both lgI 37 27290718 27290647 Pro TGG ttcacaaatt agcttcacaa 0 0 73.73 45.85 27.88 Both lgI 38 27289658 27289587 Pro TGG agcatcgtac agttttcatt 0 0 73.73 45.85 27.88 Both lgIX 40 4789613 4789542 Pro TGG atcaagaaat aaaaattttc 0 0 73.73 45.85 27.88 Both lgIX 41 4788391 4788320 Pro TGG atcaccggtt atttttcact 0 0 73.73 45.85 27.88 Both lgXIV 1 603578 603649 Pro TGG cttcacaaac gttcttttga 0 0 73.73 45.85 27.88 Both lgXIV 10 6357553 6357624 Pro TGG taaccgaaat acctcgtttt 0 0 73.73 45.85 27.88 Both lgXIV 9 6240553 6240624 Pro TGG taaccgaaat acctcgtttt 0 0 73.73 45.85 27.88 Both lgXV 17 8581184 8581113 Pro TGG ttcgtaaact atcttcaaca 0 0 73.73 45.85 27.88 Both lgXV 18 8576897 8576826 Pro TGG ttcgtaaact atcttcaaca 0 0 73.73 45.85 27.88 Both lgXV 20 5753549 5753478 Pro TGG ttaagcaatt ggcttttttt 0 0 73.73 45.85 27.88 Both scaffold1981 1 2152 2081 Pro TGG ttaataaaac tagctctacg 0 0 73.73 45.85 27.88 Both scaffold29 3 2868108 2868037 Pro TGG ataacaagat tcactttaaa 0 0 73.73 45.85 27.88 Both scaffold70 2 1070584 1070655 Pro TGG ttgcccgaga cttttttcct 0 0 73.73 45.85 27.88 Both lgIX 37 4794399 4794328 Pro TGG acacaacagt cgttaagtga 0 0 74.34 46.93 27.41 Both scaffold20690 1 231 302 Pro TGG acacaacagt cattaaaaac 0 0 74.34 46.93 27.41 Both scaffold44 1 188114 188043 Pro TGG acaacaagaa tatgcctttt 0 0 74.34 46.93 27.41 Both   scaffold57 4 1568479 1568395 Pseudo ??? gatgtccaca attaattacc 0 0 20.02 -3.86 23.88 Eufind lgII 34 7721407 7721334 Pseudo ??? tggagagcaa ttctttattt 0 0 29.80 6.86 22.94 Eufind scaffold616 1 12060 11981 Pseudo ??? ggttaccaaa gacaggaaaa 0 0 34.08 4.16 29.92 Eufind lgIII 27 14287308 14287226 Pseudo AAA aaaaatcatc taaaatgacc 14287271 14287263 24.80 25.07 -0.27 Eufind scaffold407 1 21489 21570 Pseudo AAA ttaaccatct tatgatggcc 21525 21530 20.11 16.41 3.70 Eufind lgXIII 6 2361441 2361522 Pseudo AAA atatacgtct tatgatggcc 2361477 2361482 20.11 16.41 3.70 Eufind lgVI 20 18203325 18203245 Pseudo AAG aaaccatcta tatgatggcc 18203290 18203285 20.00 18.33 1.67 Eufind lgI 46 20039500 20039419 Pseudo AAG aataatcatc tatgattgtc 20039463 20039456 21.30 17.19 4.11 Eufind lgXVI 4 2088862 2088944 Pseudo AAG gaaaaccatc tatgatgacc 2088899 2088907 29.61 25.42 4.19 Eufind scaffold64 2 24812 24729 Pseudo AAG tataatcatc atgatgacca 24775 24767 24.72 9.91 14.81 Eufind lgXVII 4 2567581 2567662 Pseudo AAG cataaccttc tatgatggtc 2567618 2567623 23.27 21.23 2.04 Eufind scaffold644 1 30677 30756 Pseudo AAG aattaagaaa atattgatgg 30712 30720 23.65 24.09 -0.44 Eufind scaffold455 1 4032 4114 Pseudo AAG agtaaccatc tatgatggcc 4069 4077 22.40 24.52 -2.12 Eufind scaffold137 1 453155 453073 Pseudo AAG agtaaccatc tatgatggcc 453118 453110 22.40 24.52 -2.12 Eufind lgX 3 6268961 6269042 Pseudo AAG gatcatatct tataatggcc 6268997 6269005 22.56 6.97 15.59 Eufind lgIX 18 7188229 7188311 Pseudo AAG aacaaccatc tatgatggcc 7188266 7188271 22.60 24.05 -1.45 Eufind scaffold107 1 800966 801048 Pseudo AAG ttaaaccatc tgttgatggc 801003 801011 20.92 16.15 4.77 Eufind lgXII 20 8808350 8808270 Pseudo AAG taaccatcta tatgatggcc 8808315 8808310 20.81 18.34 2.47 Eufind scaffold87 2 948222 948140 Pseudo AAG cctaaccatc tatgatggtc 948185 948180 20.57 16.91 3.66 Eufind lgIX 25 10827941 10827868 Pseudo ACG gagatgaggt caaccaacta 0 0 28.23 28.78 -0.55 Eufind lgII 35 7676237 7676164 Pseudo ACG agatgaggtg cgatgtcagg 0 0 33.94 37.56 -3.62 Eufind lgVI 29 10198682 10198609 Pseudo ACT gaaatgaggg taacttagca 0 0 25.41 31.72 -6.31 Eufind scaffold6869 1 1650 1579 Pseudo AGA ccggtatctc acatttttcg 0 0 20.82 39.30 -18.48 Eufind lgVIII 4 2106150 2106233 Pseudo AGA ctgcaaccaa tcatgttgtt 0 0 36.78 35.92 0.86 Eufind lgIV 10 13251936 13252009 Pseudo AGT ggcacacaga tttctgataa 0 0 31.05 32.40 -1.35 Eufind lgIV 9 13246299 13246372 Pseudo AGT ggcacacaga tttctgataa 0 0 33.13 34.33 -1.20 Eufind lgX 15 17466042 17466115 Pseudo CAC attgtcggtt tacttatttc 0 0 27.47 39.48 -12.01 Eufind scaffold40 1 682442 682513 Pseudo CCG gcttaaacaa aatcccatgg 0 0 46.12 42.83 3.29 Eufind scaffold87 1 149879 149949 Pseudo GCA gacaaatctt tgtgctctct 0 0 30.02 29.54 0.48 Eufind lgI 2 1227246 1227317 Pseudo GCC gtgaacccaa gtagacggtc 0 0 21.32 30.96 -9.64 Eufind scaffold15635 1 328 400 Pseudo GCC agcactgctt cttttgtttt 0 0 33.44 34.67 -1.23 Eufind scaffold1449 1 3012 3091 Pseudo GTA tcttcttcct ctaatccacc 0 0 28.29 7.44 20.85 Eufind scaffold376 2 24411 24332 Pseudo GTA tcttcttcct ctaatccacc 0 0 28.29 7.44 20.85 Eufind scaffold413 1 34615 34536 Pseudo GTA tcttcttcct ctaatccacc 0 0 28.29 7.44 20.85 Eufind scaffold11540 1 1121 1048 Pseudo GTC tcgtttctct acaaatccaa 0 0 41.63 37.92 3.71 Eufind scaffold201 1 170232 170305 Pseudo GTG aatattaggg gataaccgta 0 0 22.13 22.62 -0.49 Eufind scaffold18795 1 1054 1116 Pseudo GTG acatcgaagt ccagcagcca 0 0 26.93 2.87 24.06 Eufind lgI 30 27169595 27169668 Pseudo GTT aaaagaccag ctagctctag 0 0 28.58 27.07 1.51 Eufind lgII 5 4455874 4455947 Pseudo GTT ttaacaagct ttcattttgc 0 0 32.77 35.09 -2.32 Eufind scaffold10589 2 393 309 Pseudo TAA attttaccct atttgcttcc 0 0 37.45 -10.90 48.35 tRNAscan lgVI 10 11552394 11552476 Pseudo TAA ataaactatc tatgatggcc 11552430 11552439 21.11 5.55 15.56 Eufind scaffold311 1 66834 66763 Pseudo TGC actaactgat tttactcgtt 0 0 28.86 26.40 2.46 Eufind scaffold70 5 1114764 1114693 Pseudo TGC actaactgat tttactcgtt 0 0 28.86 26.40 2.46 Eufind scaffold70 6 1085247 1085176 Pseudo TGC actaactgat tttactcgtt 0 0 28.86 26.40 2.46 Eufind scaffold70 4 1127161 1127089 Pseudo TGC gaaatcaatc ttctgttttt 0 0 34.67 30.79 3.88 Eufind scaffold185 1 154022 153949 Pseudo TGG accaattgaa ctgacagagt 0 0 27.25 6.60 20.65 Both lgVI 5 5747897 5747968 Pseudo TTT caaacatata tttaaccttt 0 0 52.11 52.58 -0.47 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str lgVIII 22 10894950 10894879 SeC TCA atatgtgatg atatttttcc 0 0 48.04 0.00 0.00 Eufind   lgX 26 18975321 18975240 Ser AGA aagaaaacaa tattttttaa 0 0 78.81 49.25 29.56 Both lgVI 24 14430805 14430724 Ser AGA tcctcaaagg catatttgag 0 0 81.33 50.84 30.49 Both lgXIII 13 11712579 11712498 Ser AGA ctgcaacaag cttttccttt 0 0 81.33 50.84 30.49 Both lgIII 3 4722542 4722623 Ser AGA aagaagtgca gatttcatat 0 0 81.73 51.60 30.13 Both lgIII 4 4725134 4725215 Ser AGA aagaagtgca gatttcatat 0 0 81.73 51.60 30.13 Both lgXII 12 12350724 12350805 Ser AGA gtacaataag ttctttttcc 0 0 81.73 51.60 30.13 Both lgII 25 21395921 21395840 Ser AGA atcaactgtt atttttgttt 0 0 82.35 52.68 29.67 Both lgVI 6 6275159 6275240 Ser AGA actccagcct ttaattttgt 0 0 82.35 52.68 29.67 Both lgVIII 11 8501913 8501994 Ser AGA agaccatcgc ttttgttttt 0 0 82.35 52.68 29.67 Both lgVIII 20 11630028 11629947 Ser AGA taataaacaa taattttata 0 0 82.35 52.68 29.67 Both lgX 31 11389289 11389208 Ser AGA tcatcattaa cgttattatc 0 0 82.35 52.68 29.67 Both scaffold4782 1 782 701 Ser AGA atcaactgtt atttttattt 0 0 82.35 52.68 29.67 Both lgIV 7 6555537 6555618 Ser AGA aacaaaactc gttttggctc 0 0 82.83 53.16 29.67 Both lgX 34 5478825 5478744 Ser AGA cagcaattag atttttgaat 0 0 82.83 53.16 29.67 Both scaffold20723 1 145 226 Ser AGA ggggacacga ttttggttta 0 0 83.30 50.10 33.20 Both lgI 12 9991616 9991697 Ser AGA gaacagcgaa ctttatttat 0 0 84.12 51.69 32.43 Both lgIX 12 5502787 5502868 Ser CGA tctctccccc gcttttgctt 0 0 39.61 26.39 13.22 Eufind scaffold22022 1 648 562 Ser CGA ccaagttacc ccataacaaa 0 0 61.90 30.06 31.84 Both lgVI 23 16219411 16219330 Ser CGA ttagtaaacc cttctatcct 0 0 77.47 45.62 31.85 Both scaffold10063 1 904 985 Ser CGA ttagtaaacc cttctatcct 0 0 77.47 45.62 31.85 Both lgIII 38 5441968 5441887 Ser CGA gattaaattg tttttctttt 0 0 78.47 46.62 31.85 Both lgI 44 20630202 20630121 Ser CGA gtaaaggcta attttttagc 0 0 81.28 49.43 31.85 Both lgXVIII 16 4428244 4428163 Ser CGA tcatctaaac cctcttttct 0 0 81.28 49.43 31.85 Both lgXVI 20 4450598 4450528 Ser GCT gaaaaaaaat cgctcaagtc 0 0 24.60 10.89 13.71 Eufind lgXV 23 1411244 1411157 Ser GCT ttctcaattg gttccgttga 0 0 38.84 19.58 19.26 Both scaffold635 1 23745 23832 Ser GCT ttccgatcat gcagaacggg 0 0 42.95 28.70 14.25 Both scaffold3402 1 6626 6539 Ser GCT ttctcaattg gttccgttga 0 0 55.06 26.73 28.33 Both scaffold4751 1 1448 1535 Ser GCT ttctcaattg gttccgttga 0 0 55.06 26.73 28.33 Both scaffold11859 2 820 900 Ser GCT tgcgcacgat ttttcctttt 0 0 75.61 42.49 33.12 Both lgI 18 19373123 19373204 Ser GCT gtcatgtagc caactatttt 0 0 77.62 43.68 33.94 Both lgIII 40 3557996 3557915 Ser GCT aaagtgtaac tttaacatct 0 0 77.62 43.68 33.94 Both lgIII 41 3553021 3552940 Ser GCT aaggtgtaac tttattttta 0 0 77.62 43.68 33.94 Both lgIX 32 6598588 6598507 Ser GCT gacagacagc catgtgtttt 0 0 77.62 43.68 33.94 Both scaffold158 1 124784 124703 Ser GCT ttgcatcaac tctcattttt 0 0 77.62 43.68 33.94 Both scaffold28 6 359043 358962 Ser GCT tagcacaaac gttaaatttt 0 0 77.62 43.68 33.94 Both lgI 42 25305071 25304990 Ser GCT catcaccaaa aattgttttt 0 0 79.53 46.09 33.44 Both lgIX 2 1089191 1089272 Ser GCT ttccatcaac tttcgaaatt 0 0 79.53 46.09 33.44 Both lgIX 28 7134114 7134033 Ser GCT ggacacagaa gtctgtttta 0 0 79.53 46.09 33.44 Both lgVIII 19 11749246 11749165 Ser GCT tgataaacaa cttgtttttt 0 0 79.53 46.09 33.44 Both lgXVII 3 1794976 1795057 Ser GCT gaacaacaaa aaatgatttt 0 0 79.53 46.09 33.44 Both scaffold148 2 497836 497917 Ser GCT catcattgac tatttgtttt 0 0 79.53 46.09 33.44 Both scaffold66 4 388798 388717 Ser GCT accgtcaaca tttatgtttt 0 0 79.53 46.09 33.44 Both scaffold13262 5 489 408 Ser GCT gcgagagcaa gtgcgttgtt 0 0 82.69 53.52 29.17 Both lgIII 2 3739080 3739166 Ser GGA tcattatgta caccttcacc 0 0 55.31 28.95 26.36 Both scaffold1448 1 11195 11109 Ser GGA tcattatgta caccttcacc 0 0 55.31 28.95 26.36 Both scaffold626 2 5216 5130 Ser GGA agattatgta ccagtggaag 0 0 58.88 32.52 26.36 Both scaffold666 2 7705 7791 Ser GGA agattatgta ccagtggaag 0 0 58.88 32.52 26.36 Both scaffold3234 1 678 764 Ser GGA cgcggtcttc ccaaaatgat 0 0 63.40 28.06 35.34 Both scaffold8778 1 1468 1381 Ser TGA attcaaaatg tttttataac 0 0 46.91 18.80 28.11 tRNAscan lgI 5 7062330 7062419 Ser TGA attatctttc tttctcggtg 0 0 49.45 32.73 16.72 Both lgVI 21 18128210 18128129 Ser TGA acatcaataa gttttctctt 0 0 74.89 43.45 31.44 Both lgXVIII 12 6434067 6433986 Ser TGA agaacaagaa ttttttgttt 0 0 78.27 46.08 32.19 Both lgI 25 24106771 24106852 Ser TGA atcaaataac gatagattat 0 0 80.82 48.39 32.43 Both lgI 26 24112721 24112802 Ser TGA atcaaataac gacagattat 0 0 80.82 48.39 32.43 Both lgIII 23 15229533 15229452 Ser TGA cagcaccagt gctttttatt 0 0 80.82 48.39 32.43 Both lgXII 7 11501252 11501333 Ser TGA accaacaagc tttttccgat 0 0 80.82 48.39 32.43 Both lgXV 9 7254461 7254542 Ser TGA aacagcaatc tttttccaat 0 0 80.82 48.39 32.43 Both lgXVIII 13 6433688 6433607 Ser TGA aaataaaaca tttttctatc 0 0 80.82 48.39 32.43 Both scaffold70 3 1368875 1368956 Ser TGA ttacaaatca attctttttt 0 0 80.82 48.39 32.43 Both lgXIII 12 12122410 12122329 Ser TGA attcatgagc ttttgccgtt 0 0 81.08 48.89 32.19 Both scaffold12679 2 491 572 Ser TGA ctccacggca tttctttttt 0 0 86.34 53.02 33.32 Both   scaffold28 4 1516964 1516893 Sup TTA tgactctgta cctctgaaat 0 0 32.75 10.70 22.05 Eufind   lgVI 19 17862349 17862422 Thr AGT cgtctgtaaa caaagagttg 0 0 71.78 49.32 22.46 Both lgII 9 8885601 8885674 Thr AGT ctatcagaaa gcaaagtgat 0 0 74.28 46.95 27.33 Both lgXIV 23 204529 204456 Thr AGT gccagcaaat tttcgatgat 0 0 74.28 46.95 27.33 Both scaffold6877 1 850 777 Thr AGT gccagcaaat tttcgatgat 0 0 74.28 46.95 27.33 Both lgVI 11 11647284 11647357 Thr AGT atgcatgcaa ggaaccgctg 0 0 76.02 48.69 27.33 Both lgXVIII 9 10993465 10993392 Thr AGT taacagataa cataacaaat 0 0 76.02 48.69 27.33 Both lgI 57 5477445 5477372 Thr AGT gtatcaacca tttaagtaag 0 0 76.90 50.29 26.61 Both lgII 11 9025574 9025647 Thr AGT ttgtcaaata acttggttat 0 0 76.90 50.29 26.61 Both lgX 1 98367 98440 Thr AGT taaccggcag gagctaaccg 0 0 76.90 50.29 26.61 Both lgXIII 20 780745 780672 Thr AGT agatcaacca acacgaccat 0 0 76.90 50.29 26.61 Both lgXIV 2 752758 752831 Thr AGT tccaacaaca ataattcgat 0 0 76.90 50.29 26.61 Both scaffold133 2 541346 541419 Thr AGT cattcaacaa ctaagatctt 0 0 76.90 50.29 26.61 Both scaffold220 1 3380 3307 Thr AGT ttgtcaaata acttggttat 0 0 76.90 50.29 26.61 Both scaffold77 1 596467 596394 Thr AGT tgctcaacaa aatctgtctt 0 0 76.90 50.29 26.61 Both scaffold13262 7 194 122 Thr AGT tagggcgcga ctgcctactt 0 0 81.57 54.77 26.80 Both scaffold11859 1 28 99 Thr CGT tgtccgtaca catcttttgc 0 0 76.20 62.53 13.67 Both scaffold15635 5 1138 1210 Thr CGT acagagggtg cttttgtttc 0 0 80.46 56.00 24.46 Both lgVIII 29 6013625 6013554 Thr CGT atcggcaaag ctggcgtgaa 0 0 82.42 59.89 22.53 Both lgX 11 14599950 14600021 Thr CGT actagcgaag ctgatatttt 0 0 82.42 59.89 22.53 Both lgXVI 1 61122 61193 Thr CGT tgagcatctt ttgcttttaa 0 0 82.42 59.89 22.53 Both lgXII 21 5851433 5851362 Thr CGT ataaacaact aattgttttg 0 0 84.43 63.80 20.63 Both scaffold11214 4 1337 1408 Thr GGT cagcctcaag ccattatctc 0 0 80.22 51.06 29.16 Both scaffold3183 3 6589 6518 Thr GGT gtcaagtttc ccatcaatcc 0 0 80.22 51.06 29.16 Both scaffold311 2 15950 15886 Thr TGT ctgatctaat ctccattaac 0 0 28.53 10.52 18.01 Eufind lgV 5 2422938 2423009 Thr TGT gtagtcaggt ttgagtattt 0 0 65.33 37.51 27.82 Both lgX 4 6388419 6388491 Thr TGT tgttatgtga tttttttcta 0 0 72.03 49.31 22.72 Both lgX 8 12335015 12335086 Thr TGT attccaaatg aatttaaata 0 0 73.39 49.17 24.22 Both lgI 8 7617528 7617599 Thr TGT aagcaacaag tgatttatat 0 0 78.52 50.14 28.38 Both lgVII 2 5939046 5939117 Thr TGT gatgtaaggt ttctgtattt 0 0 78.52 50.14 28.38 Both scaffold746 1 7503 7432 Thr TGT aagcaacaag tgatttatat 0 0 78.52 50.14 28.38 Both scaffold64 1 737483 737412 Thr TGT gtatacaaga ttttctttat 0 0 81.19 54.96 26.23 Both lgI 58 3885344 3885273 Thr TGT gtcatgaatt ttcatcttga 0 0 82.64 57.48 25.16 Both lgIII 15 15480569 15480640 Thr TGT atttcaaatt tctttgtaat 0 0 82.64 57.48 25.16 Both lgVII 23 1114887 1114816 Thr TGT tacccgaaaa tttttggttt 0 0 82.64 57.48 25.16 Both lgXII 5 10844320 10844391 Thr TGT ttaagtggaa tcttttttac 0 0 82.64 57.48 25.16 Both lgXVI 23 1267648 1267577 Thr TGT ttaatagtta atctaaaggg 0 0 82.64 57.48 25.16 Both   scaffold635 4 16943 16870 Trp CCA tgataagaaa attccgaatc 0 0 64.70 35.18 29.52 Both scaffold2835 2 6729 6656 Trp CCA taataaaaaa agtccattct 0 0 65.83 36.76 29.07 Both lgII 7 6428540 6428611 Trp CCA actcaccagt attccttttt 0 0 69.26 56.13 13.13 Eufind scaffold11859 3 1470 1399 Trp CCA gtgtcggggg tcctttgcgc 0 0 69.87 53.93 15.94 Both scaffold15635 4 987 1058 Trp CCA gccctccctc tgcggaaccc 0 0 73.76 51.61 22.15 Both lgIX 8 3612438 3612509 Trp CCA gagctcaggt attttaattt 0 0 76.38 53.43 22.95 Both scaffold86 1 847997 847926 Trp CCA aagaacaagt tttcccacag 0 0 76.38 53.43 22.95 Both scaffold86 2 844086 844015 Trp CCA atcaacaagt tttcccccag 0 0 76.38 53.43 22.95 Both scaffold86 3 821296 821225 Trp CCA aagaacaagt tttcccccag 0 0 76.38 53.43 22.95 Both lgII 1 345324 345395 Trp CCA attaacaagt atccccttct 0 0 77.63 55.47 22.16 Both lgII 33 10392799 10392728 Trp CCA ttgacagtaa attcccaaga 0 0 77.63 55.47 22.16 Both lgIII 6 9459815 9459886 Trp CCA tacatcaacg attcccttca 0 0 77.63 55.47 22.16 Both lgIV 25 535402 535331 Trp CCA tatcttcaag atccccaaac 0 0 77.63 55.47 22.16 Both lgV 12 17650870 17650799 Trp CCA cacaacaagt attcccagct 0 0 77.63 55.47 22.16 Both lgV 3 1790859 1790930 Trp CCA taataaaagt attccctgat 0 0 77.63 55.47 22.16 Both lgVII 10 9631383 9631312 Trp CCA aaagaaaagt attcccatgt 0 0 77.63 55.47 22.16 Both lgXI 1 36020 36091 Trp CCA tgttatccag atcccctccc 0 0 77.63 55.47 22.16 Both lgXI 2 37491 37562 Trp CCA aactatccag attccctcgc 0 0 77.63 55.47 22.16 Both scaffold130 2 244276 244347 Trp CCA agtcacgagt atctgccttt 0 0 77.63 55.47 22.16 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str scaffold169 2 258310 258391 Tyr GTA gcccgggaaa cttttttgtt 0 0 32.40 26.89 5.51 Eufind scaffold5959 1 1242 1325 Tyr GTA tatatataaa tttaaatatg 0 0 37.87 10.64 27.23 Eufind scaffold29 1 1181358 1181441 Tyr GTA ttttcttcct ataattcact 0 0 39.72 22.56 17.16 Eufind scaffold8060 1 1864 1781 Tyr GTA ttttcttcct ataattcact 0 0 51.74 25.37 26.37 Both scaffold11214 2 1079 1161 Tyr GTA aaatctcttc ccagtaatgg 0 0 57.99 27.84 30.15 Both scaffold3183 1 6836 6754 Tyr GTA agttctctgc ccagaatgca 0 0 59.50 30.52 28.98 Both lgX 5 10008840 10008923 Tyr GTA tgataaaaag tttttaattt 10008877 10008887 77.11 49.38 27.73 Both lgVIII 23 10042605 10042522 Tyr GTA caataaattt ctttcttttt 10042568 10042558 73.33 45.60 27.73 Both scaffold10023 1 1071 979 Tyr GTA tggatagctt aaaatccttt 1034 1015 72.93 45.20 27.73 Both lgXIII 15 11605552 11605460 Tyr GTA tgtatagaaa aataatgttt 11605515 11605496 74.78 47.05 27.73 Both lgII 13 12284861 12284948 Tyr GTA gttatcaaat attttttaca 12284898 12284912 76.64 48.91 27.73 Both lgII 14 12290829 12290916 Tyr GTA gttatccaat attttttaca 12290866 12290880 76.64 48.91 27.73 Both lgXVI 16 12329855 12329938 Tyr GTA tctcaacaaa tttttatttt 12329892 12329902 76.47 48.74 27.73 Both lgIV 15 14677093 14677176 Tyr GTA attgcatgaa tgtttctttt 14677130 14677140 76.61 48.88 27.73 Both lgVIII 40 1671102 1671019 Tyr GTA agtctacaaa tatttctttt 1671065 1671055 76.61 48.88 27.73 Both lgX 20 19430689 19430772 Tyr GTA taacaataaa atgtttttgc 19430726 19430736 77.11 49.38 27.73 Both scaffold28 1 2451377 2451465 Tyr GTA aaagcatgtt ttttttcttt 2451414 2451429 77.68 49.95 27.73 Both lgI 29 26235606 26235689 Tyr GTA acaaatgttt tattcctttt 26235643 26235653 76.33 48.60 27.73 Both lgIX 47 2963565 2963482 Tyr GTA atcaacaaaa tatttctttt 2963528 2963518 72.69 44.96 27.73 Both lgI 34 34893339 34893429 Tyr GTA aaaatagagg ttttaatcct 34893376 34893393 74.39 46.66 27.73 Both scaffold28 2 3550254 3550171 Tyr GTA caacaagcat atttattttt 3550217 3550207 77.11 49.38 27.73 Both scaffold120 2 603750 603842 Tyr GTA cggatagctt taattccttt 603787 603806 72.29 44.56 27.73 Both scaffold120 3 606457 606549 Tyr GTA tggatagctt aaaatccttt 606494 606513 72.93 45.20 27.73 Both lgII 37 7009386 7009293 Tyr GTA tattcgacaa gttttttgga 7009349 7009329 75.55 47.82 27.73 Both   scaffold150 1 184222 184295 Val AAC tgatcacgaa taaactagaa 0 0 75.28 52.70 22.58 Both lgI 16 17994000 17994073 Val AAC cacacaagaa tttcgaactt 0 0 76.67 54.09 22.58 Both lgIV 13 14165246 14165319 Val AAC aacagcgaga attattttaa 0 0 76.67 54.09 22.58 Both lgIX 21 8950189 8950262 Val AAC ttagcataaa tttttataac 0 0 76.67 54.09 22.58 Both lgVIII 25 8692699 8692626 Val AAC aagaacagaa tcttgtataa 0 0 76.67 54.09 22.58 Both lgVIII 41 1013583 1013510 Val AAC gtggcatcag ttgttttctt 0 0 76.67 54.09 22.58 Both lgX 33 6176333 6176260 Val AAC gagcaaacgc aataaaatgg 0 0 76.67 54.09 22.58 Both lgXII 14 12928967 12929040 Val AAC ttaagcatct tatttgctct 0 0 76.67 54.09 22.58 Both lgXIV 18 3730855 3730782 Val AAC ttgacaaagc ttttggtttt 0 0 76.67 54.09 22.58 Both scaffold86 4 587185 587112 Val AAC cgaacatgaa ttattttgtt 0 0 76.67 54.09 22.58 Both scaffold938 1 4930 5003 Val AAC gtggcatcag ttgttttctt 0 0 76.67 54.09 22.58 Both lgI 43 25144733 25144660 Val AAC atgaacaagc aactcctcta 0 0 76.93 54.36 22.57 Both lgIX 46 3311109 3311036 Val AAC agtcaaaagg tttttgctat 0 0 76.93 54.36 22.57 Both lgVI 1 2232732 2232805 Val AAC gtggcatcag atgttttcta 0 0 76.93 54.36 22.57 Both lgVI 2 2239226 2239299 Val AAC gtggcatcag atgttttcta 0 0 76.93 54.36 22.57 Both lgVIII 18 12089891 12089818 Val AAC taacaaaggt aagttttttt 0 0 76.93 54.36 22.57 Both lgX 6 10165113 10165186 Val AAC atctcacctt atgtttcttt 0 0 76.93 54.36 22.57 Both scaffold88 1 135864 135937 Val AAC gtctataaga attgttttat 0 0 76.93 54.36 22.57 Both scaffold12679 3 890 818 Val CAC ggggagaggc ctgcgctctt 0 0 76.30 55.73 20.57 Both lgII 28 12079518 12079445 Val CAC ttatcgaatc aaacatgttt 0 0 85.42 60.67 24.75 Both lgVIII 35 3421189 3421116 Val CAC tgcagcttct ctacttttat 0 0 85.42 60.67 24.75 Both lgVI 31 6210570 6210497 Val CAC aaaataaaac ttcacaccat 0 0 85.69 60.59 25.10 Both lgI 14 17243767 17243840 Val CAC atatcaagtt ttttttctga 0 0 86.07 61.32 24.75 Both lgIX 19 8252285 8252358 Val CAC ataacaagct tttgtcatga 0 0 86.07 61.32 24.75 Both lgXI 5 2220060 2220133 Val CAC aagtcagatt attgttttcg 0 0 86.07 61.32 24.75 Both lgXIV 20 2342214 2342141 Val CAC tcatcaaatt tctttttcct 0 0 86.07 61.32 24.75 Both scaffold130 5 244484 244411 Val CAC aaggtgccat cttcctttta 0 0 86.07 61.32 24.75 Both lgV 24 1731420 1731347 Val CAC cgacaaaact tgttcctttt 0 0 86.56 62.16 24.40 Both lgVII 15 4560060 4559987 Val CAC ttattaagct cctttaagtc 0 0 86.56 62.16 24.40 Both scaffold13844 1 266 195 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both scaffold14805 1 544 473 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both scaffold18962 1 657 586 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both scaffold7726 1 2024 1953 Val GAC gggcaaggga aacccaatgt 0 0 51.67 16.10 35.57 Both scaffold14154 1 771 844 Val GAC tcccttcaac ccaacgcatc 0 0 69.45 40.53 28.92 Both scaffold8024 1 748 821 Val GAC gaacaaacac ccaattttcc 0 0 69.98 41.54 28.44 Both scaffold120 4 681074 681146 Val TAC aggacatgaa ctatacaatt 0 0 76.93 46.57 30.36 Both scaffold15635 3 827 899 Val TAC ccgtcgccgc gctcccctgt 0 0 77.18 50.22 26.96 Both lgIV 20 5072979 5072907 Val TAC tatcaaagta tcttcttcga 0 0 81.31 49.96 31.35 Both lgIX 23 11846433 11846505 Val TAC gcaagcacaa tataaatatt 0 0 81.31 49.96 31.35 Both lgVIII 32 4575127 4575055 Val TAC caacaaatca acatatagtt 0 0 81.31 49.96 31.35 Both lgX 12 16475960 16476032 Val TAC caataataag ttttgaattt 0 0 81.31 49.96 31.35 Both lgXIII 16 11429657 11429585 Val TAC tgatcgcaaa gtttataatg 0 0 81.31 49.96 31.35 Both scaffold124 1 214790 214862 Val TAC tagcagagac ctccttttaa 0 0 81.31 49.96 31.35 Both scaffold163 1 212500 212572 Val TAC aatcattcag ttgactctac 0 0 81.31 49.96 31.35 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.