GtRNAdb

tRNAscan-SE Analysis of Pseudomonas fluorescens Pf-5

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tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
Pseudomonas_fluorescens_Pf-5 1 124473 124549 Ile GAT    0 0 98.83 72.6926.14 Both
Pseudomonas_fluorescens_Pf-5 2 124560 124635 Ala TGC    0 0 93.85 76.7417.11 Both
Pseudomonas_fluorescens_Pf-5 3 855714 855790 Ile GAT    0 0 98.83 72.6926.14 Both
Pseudomonas_fluorescens_Pf-5 4 855801 855876 Ala TGC    0 0 93.85 76.7417.11 Both
Pseudomonas_fluorescens_Pf-5 5 970963 971048 Leu GAG    0 0 64.92 37.3527.57 Both
Pseudomonas_fluorescens_Pf-5 6 971145 971221 Met CAT    0 0 86.92 62.1924.73 Both
Pseudomonas_fluorescens_Pf-5 7 980179 980254 Thr CGT    0 0 84.52 77.646.88 Eufind
Pseudomonas_fluorescens_Pf-5 8 1640063 1640152 Ser CGA    0 0 59.90 17.8842.02 Both
Pseudomonas_fluorescens_Pf-5 9 1966832 1966907 Glu TTC    0 0 66.40 38.2028.20 Both
Pseudomonas_fluorescens_Pf-5 10 1966910 1966985 Gly GCC    0 0 93.74 68.4125.33 Both
Pseudomonas_fluorescens_Pf-5 11 1967091 1967166 Glu TTC    0 0 66.40 38.2028.20 Both
Pseudomonas_fluorescens_Pf-5 12 1967170 1967245 Gly GCC    0 0 93.74 68.4125.33 Both
Pseudomonas_fluorescens_Pf-5 13 1967350 1967425 Glu TTC    0 0 66.40 38.2028.20 Both
Pseudomonas_fluorescens_Pf-5 14 1967429 1967504 Gly GCC    0 0 93.74 68.4125.33 Both
Pseudomonas_fluorescens_Pf-5 15 2042089 2042178 Ser GGA    0 0 67.56 26.6040.96 Both
Pseudomonas_fluorescens_Pf-5 16 2279398 2279473 Ala GGC    0 0 86.95 68.8618.09 Both
Pseudomonas_fluorescens_Pf-5 17 2279553 2279628 Glu TTC    0 0 66.40 38.2028.20 Both
Pseudomonas_fluorescens_Pf-5 18 2279681 2279756 Ala GGC    0 0 86.95 68.8618.09 Both
Pseudomonas_fluorescens_Pf-5 19 2279836 2279911 Glu TTC    0 0 66.40 38.2028.20 Both
Pseudomonas_fluorescens_Pf-5 20 2279964 2280039 Ala GGC    0 0 86.95 68.8618.09 Both
Pseudomonas_fluorescens_Pf-5 21 2280118 2280193 Glu TTC    0 0 66.40 38.2028.20 Both
Pseudomonas_fluorescens_Pf-5 22 2307592 2307667 Val TAC    0 0 89.92 69.1020.82 Both
Pseudomonas_fluorescens_Pf-5 23 2307727 2307803 Asp GTC    0 0 94.67 75.4919.18 Both
Pseudomonas_fluorescens_Pf-5 24 2307906 2307982 Asp GTC    0 0 94.67 75.4919.18 Both
Pseudomonas_fluorescens_Pf-5 25 2309663 2309739 Val GAC    0 0 89.08 68.4120.67 Both
Pseudomonas_fluorescens_Pf-5 26 2338296 2338372 Pro GGG    0 0 73.38 45.6327.75 Both
Pseudomonas_fluorescens_Pf-5 27 4338335 4338422 Ser TGA    0 0 68.51 34.2034.31 Both
Pseudomonas_fluorescens_Pf-5 28 5728407 5728491 Leu CAA    0 0 73.20 42.0031.20 Both
Pseudomonas_fluorescens_Pf-5 29 5924323 5924397 Gln TTG    0 0 66.82 40.3626.46 Both
Pseudomonas_fluorescens_Pf-5 30 5940615 5940691 Met CAT    0 0 90.17 67.3422.83 Both
Pseudomonas_fluorescens_Pf-5 31 6455714 6455790 Met CAT    0 0 93.84 72.3721.47 Both
Pseudomonas_fluorescens_Pf-5 32 6386291 6386215 Ile GAT    0 0 98.83 72.6926.14 Both
Pseudomonas_fluorescens_Pf-5 33 6386204 6386129 Ala TGC    0 0 93.85 76.7417.11 Both
Pseudomonas_fluorescens_Pf-5 34 6380866 6380782 Tyr GTA    0 0 70.05 43.0127.04 Both
Pseudomonas_fluorescens_Pf-5 35 6380757 6380684 Gly TCC    0 0 79.05 57.7321.32 Both
Pseudomonas_fluorescens_Pf-5 36 6380657 6380582 Thr GGT    0 0 91.65 63.8727.78 Both
Pseudomonas_fluorescens_Pf-5 37 6379249 6379174 Trp CCA    0 0 86.44 62.1924.25 Both
Pseudomonas_fluorescens_Pf-5 38 6068511 6068436 Asn GTT    0 0 89.90 59.1230.78 Both
Pseudomonas_fluorescens_Pf-5 39 6068426 6068350 Pro TGG    0 0 83.78 65.8817.90 Both
Pseudomonas_fluorescens_Pf-5 40 6068344 6068269 Lys TTT    0 0 92.89 74.3118.58 Both
Pseudomonas_fluorescens_Pf-5 41 6068173 6068097 Pro TGG    0 0 83.78 65.8817.90 Both
Pseudomonas_fluorescens_Pf-5 42 6012471 6012395 Ile GAT    0 0 98.83 72.6926.14 Both
Pseudomonas_fluorescens_Pf-5 43 6012384 6012309 Ala TGC    0 0 93.85 76.7417.11 Both
Pseudomonas_fluorescens_Pf-5 44 5493586 5493511 Lys TTT    0 0 92.89 74.3118.58 Both
Pseudomonas_fluorescens_Pf-5 45 5378541 5378468 Pseudo TTT    0 0 21.34 31.63-10.29 Eufind
Pseudomonas_fluorescens_Pf-5 46 5213841 5213751 Ser GCT    0 0 66.78 38.9627.82 Both
Pseudomonas_fluorescens_Pf-5 47 5213643 5213567 Arg ACG    0 0 85.86 61.1824.68 Both
Pseudomonas_fluorescens_Pf-5 48 5213494 5213418 Arg ACG    0 0 85.86 61.1824.68 Both
Pseudomonas_fluorescens_Pf-5 49 5209446 5209370 Arg CCT    0 0 82.39 55.6026.79 Both
Pseudomonas_fluorescens_Pf-5 50 5113164 5113089 Val TAC    0 0 92.02 71.2020.82 Both
Pseudomonas_fluorescens_Pf-5 51 5113069 5112993 Asp GTC    0 0 94.67 75.4919.18 Both
Pseudomonas_fluorescens_Pf-5 52 5112805 5112730 Val TAC    0 0 92.02 71.2020.82 Both
Pseudomonas_fluorescens_Pf-5 53 5112710 5112634 Asp GTC    0 0 94.67 75.4919.18 Both
Pseudomonas_fluorescens_Pf-5 54 4813519 4813443 Ile GAT    0 0 98.83 72.6926.14 Both
Pseudomonas_fluorescens_Pf-5 55 4813432 4813357 Ala TGC    0 0 93.85 76.7417.11 Both
Pseudomonas_fluorescens_Pf-5 56 4608534 4608458 Arg TCT    0 0 96.39 77.8818.51 Both
Pseudomonas_fluorescens_Pf-5 57 4608425 4608350 His GTG    0 0 82.99 63.6619.33 Both
Pseudomonas_fluorescens_Pf-5 58 4608292 4608208 Leu TAG    0 0 74.01 43.2430.77 Both
Pseudomonas_fluorescens_Pf-5 59 4108029 4107954 Gly GCC    0 0 93.74 68.4125.33 Both
Pseudomonas_fluorescens_Pf-5 60 3982121 3982048 Cys GCA    0 0 64.59 42.6021.99 Both
Pseudomonas_fluorescens_Pf-5 61 3944261 3944175 Leu TAA    0 0 78.29 50.4227.87 Both
Pseudomonas_fluorescens_Pf-5 62 3070627 3070553 Gln TTG    0 0 66.82 40.3626.46 Both
Pseudomonas_fluorescens_Pf-5 63 2270317 2270242 Asn GTT    0 0 87.87 59.1228.75 Both
Pseudomonas_fluorescens_Pf-5 64 1608448 1608375 Gly CCC    0 0 57.71 35.4722.24 Eufind
Pseudomonas_fluorescens_Pf-5 65 1424848 1424772 Met CAT    0 0 86.13 60.6825.45 Both
Pseudomonas_fluorescens_Pf-5 66 1424569 1424493 Met CAT    0 0 86.13 60.6825.45 Both
Pseudomonas_fluorescens_Pf-5 67 671125 671039 Leu CAG    0 0 76.03 42.8233.21 Both
Pseudomonas_fluorescens_Pf-5 68 670873 670787 Leu CAG    0 0 74.03 38.7435.29 Both
Pseudomonas_fluorescens_Pf-5 69 409069 408994 Phe GAA    0 0 89.80 64.9124.89 Both
Pseudomonas_fluorescens_Pf-5 70 374497 374422 Thr TGT    0 0 94.51 76.4918.02 Both
Pseudomonas_fluorescens_Pf-5 71 215582 215506 Arg CCG    0 0 86.39 64.0422.35 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.