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tRNAscan-SE Analysis of Pongo pygmaeus abelii (orangutan) (July 2007)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr6 19 27814781 27814853 View Ala AGC ccctgaggtg aactttattt 0 0 49.97 32.33 17.64 Both chr6 146 27864113 27864041 View Ala AGC acgtgatgtg gcttccttta 0 0 56.62 32.02 24.60 Both chr6 145 27886702 27886630 View Ala AGC cctgcgatgt agctttatta 0 0 60.99 36.38 24.61 Both chr6 18 27805653 27805725 View Ala AGC ttcctgacgt agctttatta 0 0 62.13 39.17 22.96 Both chr6 20 27818845 27818917 View Ala AGC tccccaatgt agctttatta 0 0 62.45 37.80 24.65 Both chr6 147 27861627 27861555 View Ala AGC tggccccagt gttccttggc 0 0 63.36 40.25 23.11 Both chr2a 4 85085767 85085695 View Ala AGC agcagcaggc ctcagctttt 0 0 63.68 41.02 22.66 Both chr8 7 68280862 68280934 View Ala AGC gcccagtcgt gttttcttta 0 0 63.68 41.02 22.66 Both chr6 91 29743960 29743889 View Ala AGC attttccaga ggttttgttt 0 0 64.99 50.41 14.58 Eufind chr6 100 29660371 29660300 View Ala AGC caccgtcagt ggagtgcatc 0 0 65.04 44.53 20.51 Both chr14 9 90575871 90575943 View Ala AGC agaatcacac tatgttacca 0 0 66.36 41.87 24.49 Both chr6 149 27696945 27696873 View Ala AGC ttttccacga gttttatgta 0 0 67.97 44.85 23.12 Both chr16 1 3203201 3203272 View Ala AGC aattaagcac gttctttacg 0 0 69.11 51.17 17.94 Both chr6 101 29658680 29658609 View Ala AGC caccgtcagt ggagtgcatc 0 0 69.99 45.34 24.65 Both chr1 15 101583912 101583983 View Ala AGC aagaactaaa caaaggtttt 0 0 70.90 49.90 21.00 Both chr6 106 29575818 29575747 View Ala AGC ttttcaaggt gtgtttttgt 0 0 75.78 57.59 18.19 Both chr6 61 29532022 29532093 View Ala AGC atttgtggtt ccagcttttg 0 0 76.69 53.05 23.64 Both chr6 94 29722190 29722119 View Ala AGC cgagtcccga gtccctgttt 0 0 77.02 51.49 25.53 Both chr6 64 29642947 29643018 View Ala AGC ccatcgcaac acagttgaca 0 0 77.18 53.38 23.80 Both chr6 87 29797231 29797160 View Ala AGC ccgagcgtgg gttttctttt 0 0 77.18 53.38 23.80 Both chr6 88 29770738 29770667 View Ala AGC gttccggcac tttcttttgc 0 0 77.18 53.38 23.80 Both chr6 63 29633788 29633859 View Ala AGC aaagctctca tgtattatgc 0 0 77.81 52.64 25.17 Both chr6 66 29652607 29652678 View Ala CGC gctgcggcca gctgttgatt 0 0 70.09 49.55 20.54 Both chr2b 2 46018638 46018709 View Ala CGC ctcttggctg aaacagccaa 0 0 73.12 53.51 19.61 Both chr6 10 27676486 27676557 View Ala CGC tcgtacggct agtgttttat 0 0 74.81 51.23 23.58 Both chr6 105 29591217 29591146 View Ala CGC gggtgtacga agacgatttc 0 0 74.81 51.23 23.58 Both chr6 98 29684461 29684390 View Ala TGC ctttcaggag aatgatggtt 0 0 56.23 45.60 10.63 Both chr6 103 29619156 29619085 View Ala TGC tttgcggtcc tctttccttt 0 0 69.28 47.81 21.47 Both chr6 90 29749161 29749090 View Ala TGC cttatagtaa agtgatggtt 0 0 70.95 44.60 26.35 Both chr6 93 29734862 29734791 View Ala TGC cttatagtaa agtgatggtt 0 0 70.95 44.60 26.35 Both chr12 9 127326748 127326819 View Ala TGC atacgggtaa ggccttttcc 0 0 72.71 49.12 23.59 Both chr6 96 29715944 29715873 View Ala TGC ttttcaggaa aacggtggtt 0 0 73.33 50.20 23.13 Both chr12 14 127307228 127307157 View Ala TGC taaaagggag atgtagtttt 0 0 74.45 50.86 23.59 Both chrUn 2 6856770 6856841 View Ala TGC aagtgtaggt ctgttgtttt 0 0 74.45 50.86 23.59 Both chr6 108 29551036 29550965 View Ala TGC tcctgcggag ctttagtaca 0 0 78.81 56.95 21.86 Both   chr6 141 28100107 28100035 View Arg ACG ccattacgag gaggcttatt 0 0 66.36 49.46 16.90 Both chr3 4 100886585 100886657 View Arg ACG tcctaactcg cgatgtctgt 0 0 68.07 51.18 16.89 Both chr6 123 28567300 28567228 View Arg ACG ttgcaggcgc cttgtgctca 0 0 68.07 51.18 16.89 Both chr6 31 28101375 28101447 View Arg ACG gcgcaaccgc ggctttaatt 0 0 68.07 51.18 16.89 Both chr14 7 22397273 22397345 View Arg ACG tctcatctcg ggggctcttc 0 0 72.37 52.49 19.88 Both chr6 6 27429548 27429620 View Arg ACG cgtcgtggga ttaggttttt 0 0 72.37 52.49 19.88 Both chr6 8 27660677 27660749 View Arg ACG ggaacgcgcg gtataggaag 0 0 72.37 52.49 19.88 Both chr17 23 57738149 57738077 View Arg CCG atcctgtggt cgaaagatta 0 0 65.49 49.24 16.25 Both chr16 2 3304531 3304603 View Arg CCG gtagaagcag tcgctacttt 0 0 69.88 52.79 17.09 Both chr16_random 6 4708955 4709027 View Arg CCG tgaaaagcag ttgctaattt 0 0 69.88 52.79 17.09 Both chr1_random 8 3269947 3270019 View Arg CCG actcacgtgc tgtccttact 0 0 69.88 52.79 17.09 Both chr6 69 29813809 29813881 View Arg CCG ttcggcggtt ttgttttgcg 0 0 69.88 52.79 17.09 Both chr6 99 29668207 29668135 View Arg CCG actcacgtga tgtccttact 0 0 69.88 52.79 17.09 Both chr16_random 17 7279307 7279379 View Arg CCT ttgcagttat catgtttact 0 0 42.39 36.48 5.91 Both chr7 4 136562392 136562464 View Arg CCT gttcacagaa gcgtgagttt 0 0 67.28 54.18 13.10 Both chr16_random 1 2884351 2884423 View Arg CCT tctggtaact agacaacact 0 0 71.10 54.86 16.24 Both chr16_random 16 7277067 7277139 View Arg CCT tctggtaact agacaacact 0 0 71.10 54.86 16.24 Both chr16 3 3306888 3306960 View Arg CCT tctgtcgtcc aggaaaggct 0 0 71.53 57.48 14.05 Both chr16_random 7 4711297 4711369 View Arg CCT tctgtcgtcc aggaaaggct 0 0 71.53 57.48 14.05 Both chr17 22 65041068 65040996 View Arg CCT gtcttaccgc tcgcgagggc 0 0 73.41 55.84 17.57 Both chr17 19 65040472 65040544 View Arg CCT cgtgccacaa gaggtgagaa 0 0 73.88 56.31 17.57 Both chr6 4 27423922 27423994 View Arg TCG cccagcccga tttgggggac 0 0 62.78 42.15 20.63 Both chr6 110 29467437 29467365 View Arg TCG taaaccatag attctccctt 0 0 69.08 49.20 19.88 Both chr6 3 27400142 27400214 View Arg TCG agccacgagg agcgggtttc 0 0 69.55 49.67 19.88 Both chr17 20 65041679 65041751 View Arg TCG tatagcagga gaacgtttta 0 0 70.52 51.50 19.02 Both chr15 5 85990603 85990675 View Arg TCG acaaccggtt cagcgaggtg 0 0 76.93 58.34 18.59 Both chr9 3 106575278 106575350 View Arg TCG atagtcaggt tggaggtttt 0 0 76.93 58.34 18.59 Both chr1 14 92274656 92274729 View Arg TCT gtgtggtgag gtcacctggc 0 0 76.29 56.97 19.32 Both chr9 4 125307802 125307712 View Arg TCT ttccgcagcc aattttgatg 125307765 125307748 67.17 46.72 20.45 Both chr1 57 134958062 134957978 View Arg TCT tccaacaggt taacgctttt 134958025 134958014 71.18 52.88 18.30 Both chr11 17 16983370 16983285 View Arg TCT gcacgtgtct ctttttgttt 16983333 16983321 71.13 50.68 20.45 Both chr11 16 16991468 16991383 View Arg TCT gcacgtgtct ctttttgttt 16991431 16991419 71.13 50.68 20.45 Both chr6 48 28459681 28459767 View Arg TCT agcacaagca tatgtttatt 28459718 28459731 71.85 52.77 19.08 Both chr9_random 1 4657746 4657656 View Arg TCT ttccgcagcc aattttgatg 4657709 4657692 67.17 46.72 20.45 Both chr17 3 8140850 8140936 View Arg TCT cctaccaggt gttttatttc 8140887 8140900 71.15 50.70 20.45 Both   chr1_random 12 27649988 27650061 View Asn ATT actagtacct cctgttctag 0 0 59.21 44.57 14.64 Eufind chr1_random 20 32277497 32277570 View Asn ATT actagtacct cctgttctag 0 0 59.21 44.57 14.64 Eufind chr6 44 28399424 28399495 View Asn GTT agtgagttct aaaagtctcg 0 0 46.57 28.60 17.97 Both chr1 72 101910302 101910229 View Asn GTT aactgaggtt tgattttaaa 0 0 46.88 28.26 18.62 Both chr1 16 101853251 101853324 View Asn GTT agccattaga gcacctttta 0 0 49.96 42.19 7.77 Both chrUn 6 11265001 11265074 View Asn GTT agccattagg gcacctttta 0 0 53.45 37.92 15.53 Both chr1 45 213713537 213713464 View Asn GTT aattgagctt tgattttaaa 0 0 58.06 45.45 12.61 Eufind chr1 32 213819391 213819464 View Asn GTT agttgatgtt tgattttaaa 0 0 58.37 46.40 11.97 Both chr1 38 213887513 213887586 View Asn GTT agttgatgtt tgattttaaa 0 0 58.37 46.40 11.97 Both chr1 52 213641442 213641369 View Asn GTT tgttgacgtt tgattttaaa 0 0 58.65 47.12 11.53 Both chr1_random 4 363034 363107 View Asn GTT aattgaggtt tgattttaaa 0 0 61.88 51.59 10.29 Eufind chr1_random 18 30932679 30932752 View Asn GTT tgttgatgtt tgattttaaa 0 0 62.08 49.77 12.31 Both chr1 48 213671625 213671552 View Asn GTT agttgatgtt tgattttaaa 0 0 64.70 46.95 17.75 Both chr1 49 213670553 213670480 View Asn GTT agttgatgtt tgattttaaa 0 0 72.24 54.49 17.75 Both chr1 23 107460091 107460164 View Asn GTT agtagttctt cttgctctag 0 0 73.73 50.62 23.11 Both chrUn 18 11537757 11537684 View Asn GTT agtagtgctt attattgcaa 0 0 73.82 50.55 23.27 Both chr1_random 24 33397206 33397279 View Asn GTT aattgaggtt tgattttaaa 0 0 75.15 55.02 20.13 Both chrUn 13 11630170 11630097 View Asn GTT gcttagccac ttactgacct 0 0 75.32 59.31 16.01 Both chrUn 24 11341851 11341778 View Asn GTT aactgaggtt tgattttaaa 0 0 76.20 55.91 20.29 Both chr1 56 213601641 213601568 View Asn GTT ggaagcgctt cttattggaa 0 0 76.91 56.16 20.75 Both chr1 33 213829337 213829410 View Asn GTT ggaagcgctt cctattggac 0 0 78.39 56.12 22.27 Both chr1 30 213796438 213796511 View Asn GTT ggaagcgctt cttattggaa 0 0 80.50 57.23 23.27 Both chr1 36 213859238 213859311 View Asn GTT ggaagcgctt cttattggaa 0 0 80.50 57.23 23.27 Both chr1 40 213909864 213909937 View Asn GTT ggaagcgctt cttattggaa 0 0 80.50 57.23 23.27 Both chr1 46 213699400 213699327 View Asn GTT ggaagcgctt cttattggaa 0 0 80.50 57.23 23.27 Both chr1 50 213660644 213660571 View Asn GTT ggaagcgctt cctattggaa 0 0 80.52 57.26 23.26 Both chr1 11 89874708 89874781 View Asn GTT ttccatgtca gttaggattt 0 0 82.24 58.97 23.27 Both chr1 39 213897453 213897526 View Asn GTT ggaagcgctt cttattggac 0 0 82.24 58.97 23.27 Both chr1 53 213627254 213627181 View Asn GTT ggaagcgctt cttattggac 0 0 82.24 58.97 23.27 Both chr10 6 23180284 23180211 View Asn GTT caacatggga cgctttcgtt 0 0 82.24 58.97 23.27 Both chr13_random 1 7635479 7635406 View Asn GTT gagtaactgg gtcagcgctt 0 0 82.24 58.97 23.27 Both chr17 18 50700206 50700279 View Asn GTT aatcgattcg ctgtgacctt 0 0 82.24 58.97 23.27 Both chr19 1 1320390 1320463 View Asn GTT ccttagggct gacggtgact 0 0 82.24 58.97 23.27 Both chr19 2 1322272 1322345 View Asn GTT ccgcagggct gacggtgact 0 0 82.24 58.97 23.27 Both chr1 83 89776595 89776522 View Asn GTT gtgaacgcgt aaagtcgtat 0 0 83.66 60.39 23.27 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr5 9 143933695 143933623 View Asp GTC aagactgtcg gcagcagtcc 0 0 55.81 32.61 23.20 Both chr6 129 28480861 28480790 View Asp GTC ccttaggtct atgaagtagc 0 0 64.29 41.82 22.47 Both chr1 8 89856257 89856328 View Asp GTC gtcgccgtcg gcagccgtcc 0 0 72.92 48.38 24.54 Both chr12 11 127326500 127326429 View Asp GTC gtatggcttg gtcaacaatg 0 0 72.92 48.38 24.54 Both chr12 13 127313020 127312949 View Asp GTC ttttaggcgg gccaactata 0 0 72.92 48.38 24.54 Both chr12 6 97210581 97210652 View Asp GTC tctgtgcgat gcacaataat 0 0 72.92 48.38 24.54 Both chr12_random 1 4906891 4906962 View Asp GTC tttgtgcggt gcacaataat 0 0 72.92 48.38 24.54 Both chr17 31 8242433 8242362 View Asp GTC tgcgggtccc agtactggta 0 0 72.92 48.38 24.54 Both chr1_random 27 30066712 30066641 View Asp GTC gtcgccgtcg gcagccgtcc 0 0 72.92 48.38 24.54 Both chr6 41 28375007 28375078 View Asp GTC tcacgttcat aagacctaag 0 0 72.92 48.38 24.54 Both chr12 7 99755008 99755079 View Asp GTC ggctaacgac atgtgaagag 0 0 74.76 50.21 24.55 Both   chr17 16 50579312 50579384 View Cys GCA ttctggtaga cacagctact 0 0 49.50 33.53 15.97 Both chr7 22 147392976 147392905 View Cys GCA caccaggcaa ctgccactta 0 0 57.37 41.87 15.50 Both chr7 5 147101741 147101812 View Cys GCA aatggctgca agttttcttc 0 0 58.20 42.45 15.75 Eufind chr7 6 147122778 147122849 View Cys GCA ggcaagtcct actcgtttta 0 0 64.37 54.12 10.25 Both chr15 4 77249158 77249230 View Cys GCA aacaggtgaa tctcggatgt 0 0 64.45 47.72 16.73 Both chr7 26 147166786 147166715 View Cys GCA tgcgtacctt ttgtcactac 0 0 68.91 54.10 14.81 Both chr7 20 147441442 147441371 View Cys GCA gtaagtgggt ctctatttaa 0 0 70.09 52.13 17.96 Both chr7 27 147165015 147164944 View Cys GCA tgagtacctt ttgtcactac 0 0 70.30 55.49 14.81 Both chr7 12 147395653 147395724 View Cys GCA atgacaagca actgtacttt 0 0 71.19 49.16 22.03 Both chr7 17 147459523 147459594 View Cys GCA taccaggcaa gctgccactt 0 0 71.19 49.16 22.03 Both chr7 29 147144962 147144891 View Cys GCA taacataact agtattttaa 0 0 71.19 49.16 22.03 Both chr7 8 147361238 147361309 View Cys GCA atgacaagca actgtacttt 0 0 71.19 49.16 22.03 Both chr7 24 147212930 147212859 View Cys GCA cttgtgtgat gcacagtggc 0 0 71.34 52.09 19.25 Both chr7 16 147431100 147431171 View Cys GCA tcctgagcct gccctgtttt 0 0 71.64 52.46 19.18 Both chr4 3 128176966 128176895 View Cys GCA aagcagtggt ctgtgccgtg 0 0 72.38 55.65 16.73 Both chr7 7 147353511 147353582 View Cys GCA tagaagctga ggaaagagtc 0 0 73.92 51.61 22.31 Both chr3 7 134597870 134597799 View Cys GCA ttactagtgt gtgcatttgt 0 0 74.20 55.02 19.18 Both chr7 18 147513590 147513661 View Cys GCA actttcatca gctgtgttct 0 0 74.20 55.02 19.18 Both chr7 21 147408511 147408440 View Cys GCA gcaattaaat tcctattttc 0 0 74.20 55.02 19.18 Both chr7 23 147387533 147387462 View Cys GCA gtagtcaaat acctgttttc 0 0 74.20 55.02 19.18 Both chr14 8 74110697 74110768 View Cys GCA gacaggtgaa tcctggatgt 0 0 74.26 55.02 19.24 Both chr7 19 147496955 147496884 View Cys GCA tgtggcccgt gctggttttc 0 0 74.26 55.02 19.24 Both chr17 17 50607749 50607820 View Cys GCA tacggccaaa tctgtggtgt 0 0 76.40 57.16 19.24 Both chr17 15 50571413 50571484 View Cys GCA gtggaggcgc cggtggtttg 0 0 77.18 59.26 17.92 Both chr17 13 50294048 50294119 View Cys GCA ctggcgtggt ctgtacgccg 0 0 77.71 58.47 19.24 Both chr17 14 50294819 50294890 View Cys GCA tgacggtagg ctttaacatc 0 0 77.71 58.47 19.24 Both chr17 25 50573127 50573056 View Cys GCA cggtgacaga cgagtttctt 0 0 77.71 58.47 19.24 Both   chr6 117 28692325 28692254 View Gln CTG taggtaggtc aaggtgaact 0 0 66.59 50.59 16.00 Both chr17 2 8139714 8139785 View Gln CTG ataagagaga taagggtttt 0 0 67.61 48.95 18.66 Both chr1 18 102078865 102078936 View Gln CTG cccattgtga ttctgtttaa 0 0 68.84 45.55 23.29 Both chr1 59 107476008 107475937 View Gln CTG tacactgtga ttatgtttaa 0 0 70.16 46.87 23.29 Both chrUn 8 11497320 11497391 View Gln CTG cgcattgtga ttctgtttaa 0 0 70.16 46.87 23.29 Both chr6 1 19557366 19557437 View Gln CTG caggaaggag ttcatattgg 0 0 72.24 47.64 24.60 Both chr15 9 62992465 62992394 View Gln CTG cacgcgtggc gcagtggctt 0 0 73.65 50.36 23.29 Both chr6 45 28415206 28415277 View Gln CTG catgccgcaa atgggttttt 0 0 73.65 50.36 23.29 Both chr6 85 29879176 29879105 View Gln CTG tgctaaggag atcgtttctc 0 0 73.65 50.36 23.29 Both chr6 78 148198549 148198620 View Gln TTG attttgggtt ttcaaatgaa 0 0 57.33 40.06 17.27 Both chr6 116 28697147 28697076 View Gln TTG gctcgtaagc tcttggctgt 0 0 66.23 50.22 16.01 Both chr6 156 27411671 27411600 View Gln TTG gacagaaagt gttttgcttt 0 0 66.66 50.66 16.00 Both chr6 155 27412224 27412153 View Gln TTG ctgtgttgtt actgaacttt 0 0 68.31 52.31 16.00 Both chr6 60 29515396 29515467 View Gln TTG ctttgtggtc ttcaaaggtg 0 0 71.88 48.94 22.94 Both chr17_random 5 13132872 13132943 View Gln TTG gcagccagca cactagacct 0 0 73.77 50.83 22.94 Both   chr6 73 29902035 29902108 View Glu CTC agttgtaact cgggtttttc 0 0 55.87 41.30 14.57 Eufind chr1 10 89857319 89857390 View Glu CTC aagccgtctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 62 105623123 105623052 View Glu CTC acaaacagtt agaataatag 0 0 76.61 53.94 22.67 Both chr1 92 99345 99274 View Glu CTC tactatgtct gtaagcctct 0 0 76.61 53.94 22.67 Both chr1_random 29 30065658 30065587 View Glu CTC aagccgtctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1_random 6 1846201 1846272 View Glu CTC aagccgtctc gccttccttc 0 0 76.61 53.94 22.67 Both chr6 80 128276199 128276128 View Glu CTC tttaacaagt atgctgtttt 0 0 76.61 53.94 22.67 Both chrUn 20 11472569 11472498 View Glu TTC tctgtcggct tggctttttg 0 0 45.76 36.15 9.61 Both chrUn 23 11343759 11343688 View Glu TTC cctcctcatc cgttttgcac 0 0 60.26 54.05 6.21 Both chr1_random 23 33394336 33394407 View Glu TTC gaagacatcc ttgttttgca 0 0 66.77 49.66 17.11 Both chr1_random 17 30929824 30929895 View Glu TTC ttcccgtgtg ttgttttgca 0 0 68.03 48.35 19.68 Both chr15_random 1 6211066 6210995 View Glu TTC tctcgtcatc tgattggtat 0 0 69.35 46.81 22.54 Both chr1 47 213674472 213674401 View Glu TTC ctcccgtttg ttgttttgca 0 0 70.44 47.77 22.67 Both chr1 12 89878583 89878654 View Glu TTC ttaccacctc gaagtttgct 0 0 72.33 49.66 22.67 Both chr1 31 213816525 213816596 View Glu TTC ctcccgtgtg ttgttttgca 0 0 72.33 49.66 22.67 Both chr1 34 213849705 213849776 View Glu TTC ttcccgtgtg ttgttttgca 0 0 72.33 49.66 22.67 Both chr1 37 213884650 213884721 View Glu TTC ctcccgtgtg ttgttttgca 0 0 72.33 49.66 22.67 Both chr1 44 213716307 213716236 View Glu TTC ctcccgtgtg ttgttttgca 0 0 72.33 49.66 22.67 Both chr1 51 213644298 213644227 View Glu TTC ctcccgtgtg ttgttttgca 0 0 72.33 49.66 22.67 Both chr1 54 213620390 213620319 View Glu TTC ctcccgtgtg ttgttttgca 0 0 72.33 49.66 22.67 Both chr1_random 3 360147 360218 View Glu TTC ctcccttgtg ttgttttgca 0 0 72.33 49.66 22.67 Both chr13 6 41019445 41019374 View Glu TTC tagcagcact cgctgtcttt 0 0 75.00 51.69 23.31 Both chr2b_random 1 11427266 11427195 View Glu TTC agtcagcagt caacagtgat 0 0 75.00 51.69 23.31 Both chr13_random 2 4937506 4937435 View Glu TTC tgtcgtcgtc tatcaagatt 0 0 76.26 53.72 22.54 Both chr15 13 22339641 22339570 View Glu TTC tctcgtcatc tgattggtgt 0 0 76.26 53.72 22.54 Both chr8 8 71004658 71004729 View Glu TTC aggagtcgtc tgcaaagatt 0 0 77.71 55.17 22.54 Both   chr1_random 25 32275230 32275160 View Gly CCC ccagtaggag gcttgcagtt 0 0 43.67 37.31 6.36 Both chr17_random 4 7612148 7612218 View Gly CCC tagtttcaaa gctcccaact 0 0 64.87 49.48 15.39 Both chr1_random 33 6077630 6077561 View Gly CCC gctaaggaga agagggtctt 0 0 65.14 47.95 17.19 Eufind chr1_random 2 350289 350359 View Gly CCC ctaaggagag ggagggtctt 0 0 69.15 51.41 17.74 Both chrUn 15 11602670 11602600 View Gly CCC cgagagagag agagggtttt 0 0 75.86 55.81 20.05 Both chr16 20 656158 656088 View Gly CCC acttctaaca gctgactttt 0 0 76.98 51.05 25.93 Both chr2a 1 40546243 40546313 View Gly CCC cacatcaaca cgagcgtttt 0 0 76.98 51.05 25.93 Both chr1 43 213726939 213726869 View Gly CCC ccacggagag agtgggtgtt 0 0 81.38 58.35 23.03 Both chr1_random 16 30919283 30919353 View Gly CCC ccacggagag agtgggtgtt 0 0 81.38 58.35 23.03 Both chr16 11 61634551 61634621 View Gly GCC tttcaccgag tgggggtttt 0 0 63.28 54.69 8.59 Both chr16 10 61101337 61101407 View Gly GCC gccagctgga gcctatctac 0 0 67.58 59.08 8.50 Both chr1 80 89837544 89837474 View Gly GCC tgccatcggt gcacaccctc 0 0 69.11 53.65 15.46 Both chr1 7 89793051 89793121 View Gly GCC gccggtagca cgattagttt 0 0 81.62 61.57 20.05 Both chr16 13 61091197 61091127 View Gly GCC aacagctgga atgcagtgtt 0 0 81.62 61.57 20.05 Both chr16 9 61100507 61100577 View Gly GCC ctcagctgga gcaactgaaa 0 0 81.62 61.57 20.05 Both chr17 4 8145668 8145738 View Gly GCC tacaaaccgc caagcatact 0 0 81.62 61.57 20.05 Both chr2b 10 46019087 46019017 View Gly GCC cacagcgtaa agtttttgac 0 0 81.62 61.57 20.05 Both chr6 114 28800475 28800405 View Gly GCC cgtgcgcgag gtagcagcat 0 0 81.62 61.57 20.05 Both chr1 77 89861531 89861461 View Gly GCC tgccatcggt gcacaccctc 0 0 82.15 62.58 19.57 Both chr1 79 89853839 89853769 View Gly GCC tgccatcggt gcacaccctc 0 0 82.15 62.58 19.57 Both chr1_random 15 30069065 30069135 View Gly GCC tgccatcggt gcacaccctc 0 0 82.15 62.58 19.57 Both chr21 2 17195780 17195710 View Gly GCC tttcatcggt gcacgataac 0 0 82.15 62.58 19.57 Both chr6 62 29560295 29560366 View Gly TCC tttcatatgt atagatgcta 0 0 64.06 43.46 20.60 Both chr17 9 8241674 8241745 View Gly TCC tagtaccaga actcgttttg 0 0 68.68 48.40 20.28 Both chr1 63 105621773 105621702 View Gly TCC tttttcagtt ggcgtagttt 0 0 73.26 52.83 20.43 Both chr1 82 89785725 89785654 View Gly TCC attccggcgt aacttttgtc 0 0 73.26 52.83 20.43 Both chr1 9 89856945 89857016 View Gly TCC gcgccgtgcg gcgggccgac 0 0 73.26 52.83 20.43 Both chr1_random 28 30066032 30065961 View Gly TCC gcgccgtgcg gcgggccgac 0 0 73.26 52.83 20.43 Both chr19 3 4711755 4711826 View Gly TCC ttcccgagag tgcggtttta 0 0 76.83 56.40 20.43 Both chr1_random 22 33383366 33383436 View Gly TCC ctaaggagag agagggtctt 0 0 77.95 57.90 20.05 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 20 106317745 106317816 View His GTG cctgtggcct aagttgctcg 0 0 64.63 37.18 27.45 Both chr1 64 105620824 105620753 View His GTG ttagtggctc tgcgggtcta 0 0 64.63 37.18 27.45 Both chr15 1 41624326 41624397 View His GTG ccggtagctc ttgtagaaac 0 0 64.63 37.18 27.45 Both chr15 10 41623659 41623588 View His GTG ctagtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr15 11 41621892 41621821 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr1_random 30 26892082 26892011 View His GTG cctgtggctc cgttagtcta 0 0 64.63 37.18 27.45 Both chr6 27 28051914 28051985 View His GTG ctggtggcgt gtaccttaac 0 0 64.63 37.18 27.45 Both chr9 1 47878369 47878440 View His GTG tcagtagctt ggaggggaga 0 0 64.63 37.18 27.45 Both chrUn 21 11466682 11466611 View His GTG cctgtggctc atgtcgttcg 0 0 64.70 37.30 27.40 Both chr1 68 102041003 102040932 View His GTG cctgtggctc atgtcgttag 0 0 65.03 37.94 27.09 Both   chr6 37 28184955 28185028 View Ile AAT tgtcgcggcg atgggttttt 0 0 63.57 46.49 17.08 Both chr6 34 28164612 28164685 View Ile AAT ccaaaatgtt catattttcc 0 0 70.03 54.28 15.75 Eufind chr6 22 27871054 27871127 View Ile AAT ctgccggcgg cgggctcctt 0 0 80.01 61.53 18.48 Both chr14 10 103956756 103956829 View Ile AAT actatcaggt gtccagtttc 0 0 80.66 62.17 18.49 Both chr14 11 103959712 103959785 View Ile AAT actatcaggc gtccagcttc 0 0 80.66 62.17 18.49 Both chr17 8 8205989 8206062 View Ile AAT ttcagcaact ggatcgaaac 0 0 80.66 62.17 18.49 Both chr6 11 27677103 27677176 View Ile AAT atacgtaggt gctctctttt 0 0 80.66 62.17 18.49 Both chr6 139 28128516 28128443 View Ile AAT ttttccagac caggggttgt 0 0 80.66 62.17 18.49 Both chr6 143 28060168 28060095 View Ile AAT ccaccatggc cttcttcggg 0 0 80.66 62.17 18.49 Both chr6 53 28565233 28565306 View Ile AAT aaagtcgtgt ctgcgtgtca 0 0 80.66 62.17 18.49 Both chr17 27 8247251 8247178 View Ile AAT ggagacaact gcgggtggct 0 0 80.89 62.41 18.48 Both chr6 138 28165885 28165812 View Ile AAT ttgcgacgtt tatattcttc 0 0 83.32 61.08 22.24 Both chr6 55 28584976 28585049 View Ile AAT tccaccatct agtgttcgtt 0 0 83.32 61.08 22.24 Both chrX 4 3437907 3437834 View Ile GAT ggcgtcaggc cagttttggc 0 0 70.00 44.79 25.21 Both chrX 5 3435988 3435915 View Ile GAT ggcgtcaggc cagtttttgg 0 0 70.00 44.79 25.21 Both chrX 6 3434076 3434003 View Ile GAT ggcgtcaggc cagtttttgg 0 0 70.00 44.79 25.21 Both chr6 23 27945697 27945790 View Ile TAT ggagctgggt ttgttttcca 27945735 27945754 67.58 39.38 28.20 Both chr6 51 28528583 28528676 View Ile TAT aagaaagcat tgttttcttc 28528621 28528640 68.23 40.03 28.20 Both chr6 59 29461818 29461911 View Ile TAT tacttccgtg gttttactat 29461856 29461875 66.00 37.80 28.20 Both chr19 12 40346500 40346408 View Ile TAT tgcggctgga ctttttttct 40346462 40346444 68.39 40.19 28.20 Both chr2a 5 68655333 68655241 View Ile TAT gcttagcgga agaccctttt 68655295 68655277 68.11 39.92 28.19 Both chr1_random 9 7053487 7053580 View Ile TAT accatcacgt tgttttcttc 7053525 7053544 58.54 30.00 28.54 Both   chr5_random 2 1634049 1634133 View Leu AAG nnnnnnnnnn agcttgttgt 0 0 62.39 37.89 24.50 Eufind chr6 84 29881202 29881121 View Leu AAG gcctgcgggc gtgtgagatg 0 0 66.60 49.45 17.15 Both chr14 1 19915430 19915511 View Leu AAG ctagccagca tgtggtttgt 0 0 69.84 50.16 19.68 Both chr16 6 21339031 21339112 View Leu AAG ggcacagcga gggtttttcc 0 0 69.84 50.16 19.68 Both chr5_random 4 16174280 16174199 View Leu AAG ccagcagaaa gcttgttgtg 0 0 69.84 50.16 19.68 Both chr6 74 29908720 29908801 View Leu AAG cacactccat agtgcttttc 0 0 69.84 50.16 19.68 Both chrUn 1 6837263 6837344 View Leu AAG tgggtggaga gtttatggtg 0 0 69.84 50.16 19.68 Both chrUn 10 48010688 48010769 View Leu AAG ccaggagaaa gcttgttgtg 0 0 69.84 50.16 19.68 Both chr5 7 183814215 183814134 View Leu AAG ccaggaggaa acttgtgtga 0 0 71.96 50.58 21.38 Both chr5 3 183823327 183823408 View Leu AAG ccgggggaaa gcttgttgtg 0 0 73.78 50.84 22.94 Both chr6 126 28499884 28499778 View Leu CAA aataacgcgt ctaatatttt 28499846 28499824 69.48 43.70 25.78 Both chr6 125 28503028 28502921 View Leu CAA ttgtcacagt cactgtggta 28502990 28502967 68.03 43.94 24.09 Both chr6 86 29835330 29835226 View Leu CAA tacgcagcgt catacttttt 29835292 29835271 67.83 44.39 23.44 Both chr6 70 29878531 29878635 View Leu CAA cgtctcacgt caactatttt 29878569 29878590 70.23 46.79 23.44 Both chr1 91 99742 99637 View Leu CAA gcttccgagt cattcctttt 99704 99683 65.84 45.42 20.42 Both chr2a 6 67143708 67143626 View Leu CAG tgccaaagca aagctgaatt 0 0 43.81 24.58 19.23 Both chr1 42 213731021 213730948 View Leu CAG tgtatatgta tgggcttttg 0 0 48.49 37.78 10.71 Both chr1 76 89863272 89863190 View Leu CAG ccggcgcgcc agccgacctt 0 0 67.43 37.09 30.34 Both chr1 6 89786413 89786495 View Leu CAG gaaaacgtgt acatatgttt 0 0 73.38 45.30 28.08 Both chr1_random 14 30067350 30067432 View Leu CAG ccggcgcgcc agccgacctt 0 0 75.14 44.80 30.34 Both chr16 15 44546725 44546643 View Leu CAG cttacaagca gagctcaaat 0 0 75.90 46.89 29.01 Both chr16 7 44546128 44546210 View Leu CAG ctcccaggaa agtgatcttt 0 0 75.90 46.89 29.01 Both chr1 78 89855591 89855509 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1_random 13 30061349 30061431 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr6 7 27644040 27644122 View Leu CAG aactaagcca gttgttgttt 0 0 77.22 46.89 30.33 Both chrUn 36 1118772 1118698 View Leu TAA agcagggttt acatgcctgt 0 0 36.44 12.22 24.22 Both chr6 76 114549580 114549654 View Leu TAA aaccgagttt acatgcccat 0 0 38.08 10.15 27.93 Both chr6 119 28619759 28619675 View Leu TAA attgccagtg gattaaattt 0 0 58.46 37.95 20.51 Eufind chr6 140 28117036 28116954 View Leu TAA ctaccttgtc agcagtggcg 0 0 74.19 46.62 27.57 Both chr11 18 16982913 16982831 View Leu TAA tttatcaatt aagagtagct 0 0 77.52 46.12 31.40 Both chr6 77 147166489 147166571 View Leu TAA caacgtcggt gcttcccgtt 0 0 80.77 49.66 31.11 Both chr16 17 21235969 21235888 View Leu TAG agaagcggga cacccctgga 0 0 68.14 45.54 22.60 Both chr14 2 19930653 19930734 View Leu TAG taatgtgtgt gtggtatgtt 0 0 68.82 48.37 20.45 Both chr17 35 8140324 8140243 View Leu TAG tttttgtgca ggccggagtt 0 0 72.19 50.81 21.38 Both   chr19 6 36369634 36369706 View Lys CTT tgggtaagaa ccagatgaag 0 0 57.71 43.65 14.06 Both chr18 3 58575834 58575762 View Lys CTT cgtcaggtag ccagatgaag 0 0 57.99 45.14 12.85 Eufind chr16_random 4 4391577 4391649 View Lys CTT gtcactacct gagtctacct 0 0 62.10 39.07 23.03 Both chr1 28 174760075 174760147 View Lys CTT tattgcaaaa ccagattgtt 0 0 62.22 47.85 14.37 Both chr1 55 213617535 213617462 View Lys CTT agttgatgtt tgattttaaa 0 0 63.41 49.66 13.75 Both chr15 2 76292107 76292182 View Lys CTT tcctctaact cgatctttgt 0 0 64.68 44.44 20.24 Eufind chr16_random 10 4723411 4723483 View Lys CTT tattacatca gagcttttac 0 0 72.08 53.38 18.70 Both chr5 12 27011028 27010956 View Lys CTT atgaaatcaa ccagatgaag 0 0 76.72 56.37 20.35 Both chr16_random 2 4382071 4382143 View Lys CTT tattacatca gagcttttac 0 0 77.19 54.54 22.65 Both chr1 65 105619102 105619030 View Lys CTT gggaaccggt cagtggtttt 0 0 80.47 57.81 22.66 Both chr16_random 11 6838150 6838222 View Lys CTT tcagtgtgtc agacctttgt 0 0 80.47 57.81 22.66 Both chr16_random 14 7274645 7274717 View Lys CTT tcccagggaa acttgttttc 0 0 80.47 57.81 22.66 Both chr16_random 22 4715538 4715466 View Lys CTT tgtcatgacc tgaaggtttt 0 0 80.47 57.81 22.66 Both chr16_random 5 4395661 4395733 View Lys CTT tcagtgtgtc agacctttta 0 0 80.47 57.81 22.66 Both chr6 13 27679776 27679848 View Lys CTT agctgtgtga taatagtttt 0 0 80.47 57.81 22.66 Both chrUn 3 6857663 6857735 View Lys CTT gttaccgggc gcaacgggtc 0 0 80.47 57.81 22.66 Both chrUn 31 6871801 6871729 View Lys CTT aattatagct gtatttgctt 0 0 80.47 57.81 22.66 Both chr14 15 58861414 58861342 View Lys CTT tacgacaggc cgggttgtac 0 0 80.72 58.28 22.44 Both chr15 3 76296485 76296557 View Lys CTT ccttccaact gcccttgttt 0 0 80.72 58.28 22.44 Both chr16_random 20 7263498 7263426 View Lys CTT ccataagaaa tgccttttga 0 0 81.22 56.70 24.52 Both chr19 9 51117942 51117870 View Lys TTT cctgaaggga cgttcagtgg 0 0 56.05 49.16 6.89 Both chr1 88 44718663 44718591 View Lys TTT aggcaggtga tcctagtttg 0 0 60.57 50.19 10.38 Eufind chr11 13 118532647 118532575 View Lys TTT tgtgagttga ccagatattg 0 0 80.08 62.43 17.65 Both chr11 12 119524164 119524236 View Lys TTT gaaatgggca gcaatattca 0 0 81.04 63.74 17.30 Both chr6 49 28473616 28473688 View Lys TTT ctactacaga ataagtgtgg 0 0 81.41 62.43 18.98 Both chr16 8 58286539 58286611 View Lys TTT taggaaagga tgttgtgtgg 0 0 82.03 59.95 22.08 Both chr6 128 28488924 28488852 View Lys TTT agaatgcaga agtcgcgcag 0 0 83.31 61.95 21.36 Both chr6 67 29672871 29672943 View Lys TTT acaaatgagg gattgattat 0 0 83.31 61.95 21.36 Both chr1 3 45710241 45710313 View Lys TTT gcttggggga gcttgtcttt 0 0 83.80 62.78 21.02 Both chr1 87 45710815 45710743 View Lys TTT atcacgaagc tttgtagttt 0 0 83.80 62.78 21.02 Both chr11 19 16978305 16978233 View Lys TTT ttgttcaggg gatgccgttt 0 0 83.80 62.78 21.02 Both chr11 2 16974311 16974383 View Lys TTT gttggcgtga gtgtttgttt 0 0 83.80 62.78 21.02 Both chr17 1 8139120 8139192 View Lys TTT ccaccgcaga gcttgttttt 0 0 83.80 62.78 21.02 Both chr6 72 29888691 29888763 View Lys TTT gtcacaggga caagtggtgg 0 0 83.80 62.78 21.02 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr6 57 28678675 28678746 View Met CAT gttgtttacc ataaggagta 0 0 51.28 28.02 23.26 Both chr6_random 4 13172003 13171932 View Met CAT tgcctcgcgt gggagctttt 0 0 57.07 36.13 20.94 Eufind chr6 127 28489930 28489859 View Met CAT ttacggggac gctgcgtttt 0 0 63.35 40.48 22.87 Eufind chr1 74 97850342 97850271 View Met CAT acctttagat tcagagtttt 0 0 68.98 40.96 28.02 Both chr17 21 72600072 72600001 View Met CAT ttttacagcc tggactagct 0 0 68.98 40.96 28.02 Both chr6 115 28800055 28799984 View Met CAT tgttgcacag tgtttatttt 0 0 68.98 40.96 28.02 Both chr6 135 28229527 28229456 View Met CAT gaaaccagtt cgagtttcac 0 0 68.98 40.96 28.02 Both chr6 136 28195261 28195190 View Met CAT tccacccgca gggcattttt 0 0 68.98 40.96 28.02 Both chr6 153 27413598 27413527 View Met CAT acgttgcgac tatgactgtg 0 0 68.98 40.96 28.02 Both chr6 2 27387018 27387089 View Met CAT taggcggaac ggtctttttg 0 0 68.98 40.96 28.02 Both chr6_random 5 2895670 2895599 View Met CAT gacaccagtt cgagtttcac 0 0 68.98 40.96 28.02 Both chr16 12 75098968 75098896 View Met CAT tcgtcgagca gcttgacgtt 0 0 74.51 54.15 20.36 Both chr6 71 29882075 29882147 View Met CAT aggagtagtt aggcgtgtgt 0 0 76.58 56.44 20.14 Both chr6 83 29891036 29890964 View Met CAT ataatcgtct gttgccattt 0 0 76.58 56.44 20.14 Both chr6 144 27890556 27890484 View Met CAT tcaaccgtga ctactttttg 0 0 76.72 54.15 22.57 Both chr16 14 60410379 60410307 View Met CAT tctgctagaa gctgttttgt 0 0 78.21 55.64 22.57 Both chr6 21 27856330 27856402 View Met CAT gcacttcgtc acttttgcaa 0 0 78.21 55.64 22.57 Both chr8 11 130821963 130821891 View Met CAT nnnnnnnnnt caatactttt 0 0 79.85 59.49 20.36 Both   chr6 52 28561366 28561438 View Phe GAA cttacagatg gccatttagg 0 0 49.31 39.92 9.39 Both chr11 1 16968284 16968356 View Phe GAA ttccagagca gcgttttccc 0 0 72.30 58.77 13.53 Both chr6 89 29755599 29755527 View Phe GAA gtctagagta ggtgcctttt 0 0 72.76 59.43 13.33 Both chr6 82 29901565 29901492 View Phe GAA gtggggcgga tgagagccca 0 0 74.27 53.07 21.20 Eufind chr6 92 29739715 29739643 View Phe GAA gatcacagtg gatgcatttt 0 0 82.45 60.84 21.61 Both chr6 95 29716929 29716857 View Phe GAA gctcagagaa gtttttgttg 0 0 82.45 60.84 21.61 Both chr11 3 16977158 16977230 View Phe GAA tcacgtctcc gagcttttgt 0 0 84.19 62.58 21.61 Both chr12 12 127313544 127313472 View Phe GAA cacaatgcct gtttctattt 0 0 84.19 62.58 21.61 Both chr13 1 96794351 96794279 View Phe GAA tcgatagcgt gctcctttta 0 0 84.19 62.58 21.61 Both chr19 16 1322141 1322069 View Phe GAA ctgccgccca aaagttttag 0 0 84.19 62.58 21.61 Both chr19 17 1320259 1320187 View Phe GAA ctgccgccca aaagttttag 0 0 84.19 62.58 21.61 Both   chr7 3 125669290 125669361 View Pro AGG aactgccagt tactttttct 0 0 71.33 49.43 21.90 Both chr1 5 83487061 83487132 View Pro AGG aatttgtgtc tattttgggg 0 0 75.92 53.85 22.07 Both chr11 9 71694896 71694967 View Pro AGG cacaagcgac tcatttttct 0 0 75.92 53.85 22.07 Both chr14 22 19918762 19918691 View Pro AGG ttttcagcac cccttttcaa 0 0 75.92 53.85 22.07 Both chr14 23 19914731 19914660 View Pro AGG ctccccgagt tttttttttt 0 0 75.92 53.85 22.07 Both chr16_random 13 7272776 7272847 View Pro AGG tgctttgtgt ggcttttggt 0 0 75.92 53.85 22.07 Both chr16_random 19 7265567 7265496 View Pro AGG cacaacgtgt agcttttggt 0 0 75.92 53.85 22.07 Both chr16_random 21 6778208 6778137 View Pro AGG cagagtgtgt ggcttttggt 0 0 75.92 53.85 22.07 Both chr1_random 10 12333736 12333807 View Pro AGG aacttgtgtc tattttgggg 0 0 75.92 53.85 22.07 Both chr6 12 27678229 27678300 View Pro AGG atcctcaggt aagttttgtc 0 0 75.92 53.85 22.07 Both chr16_random 9 4718577 4718671 View Pro AGG tcttccgctt acactttaag 4718613 4718628 43.37 36.64 6.73 Both chr1 86 83487889 83487818 View Pro CGG tgccgagagc tggcttttac 0 0 76.52 54.46 22.06 Both chr16_random 3 4389394 4389465 View Pro CGG atgtatggga tagaagtggt 0 0 76.52 54.46 22.06 Both chr17 30 8243028 8242957 View Pro CGG cttgcacgtc tcctttacct 0 0 76.52 54.46 22.06 Both chr6 24 27992810 27992881 View Pro CGG atctgtaagt acttcatttt 0 0 76.52 54.46 22.06 Both chr16_random 18 7267040 7266969 View Pro TGG aggaagctgc cttttccttc 0 0 68.28 46.22 22.06 Both chr14 6 20009504 20009575 View Pro TGG ttaacacagt tgagaattac 0 0 76.15 54.09 22.06 Both chr16_random 12 7271302 7271373 View Pro TGG aagaagcggc cttttccttt 0 0 76.15 54.09 22.06 Both chr16_random 8 4717091 4717162 View Pro TGG ctgtcgtgtt gcttcttttt 0 0 76.15 54.09 22.06 Both chrUn 34 6838497 6838426 View Pro TGG ttgagcagcc actttttttt 0 0 76.15 54.09 22.06 Both chr11 15 71695262 71695191 View Pro TGG tttagcagct ctcttttctt 0 0 76.24 54.23 22.01 Both chr14 3 19939967 19940038 View Pro TGG ttccagttat ggtttccttt 0 0 79.61 57.55 22.06 Both   chr22 1 39524603 39524688 View SeC(e) TCA ggcaacaaga ccgggcgcag 0 0 65.60 0.00 0.00 Eufind chr19 10 46744724 46744639 View SeC(e) TCA cagttatctc gatggtagca 0 0 75.99 0.00 0.00 Eufind   chr6 130 28450637 28450556 View Ser AGA atgactgtct ngtttgaaat 0 0 68.25 40.31 27.94 Eufind chr6 43 28398718 28398799 View Ser AGA gtgactcctt agttctaggt 0 0 81.80 55.29 26.51 Both chr6 5 27428992 27429073 View Ser AGA ttcggtacct gtagtggatt 0 0 86.05 54.94 31.11 Both chr6 42 28391657 28391738 View Ser AGA tttcacagct gggtgatttt 0 0 86.83 58.50 28.33 Both chr17 28 8246884 8246803 View Ser AGA tagaagcttc tagtattttt 0 0 88.01 56.90 31.11 Both chr6 40 28374291 28374372 View Ser AGA ctccatgcgt ggttgtttta 0 0 88.01 56.90 31.11 Both chr8 12 101574791 101574710 View Ser AGA cacacagcca ggaacgtcag 0 0 88.01 56.90 31.11 Both chr6 132 28437106 28437025 View Ser AGA caatcttcgt atagcgtttc 0 0 88.50 57.39 31.11 Both chr6 46 28427543 28427624 View Ser AGA agctctttgt gtccctttct 0 0 88.50 57.39 31.11 Both chr6 29 28094161 28094242 View Ser CGA tggttagcgg tttctgggta 0 0 48.49 41.84 6.65 Both chr6 30 28095874 28095955 View Ser CGA tggttagcgg tttctgggta 0 0 53.98 37.17 16.81 Both chr6 122 28569147 28569066 View Ser CGA tgaccccggg tcgccatttt 0 0 88.07 58.89 29.18 Both chr12 3 55951217 55951298 View Ser CGA ggttttggaa gttttttttt 0 0 89.14 63.50 25.64 Both chr17 34 8159142 8159061 View Ser CGA gccgcacgcg tcagtagttt 0 0 92.09 62.91 29.18 Both chr17_random 9 8813382 8813301 View Ser CGA gccgcacgcg tcagtagttt 0 0 92.09 62.91 29.18 Both chr6 39 28189048 28189129 View Ser GCT tcgcccgaag accgttttct 0 0 81.90 54.33 27.57 Both chr6 58 29090439 29090520 View Ser GCT ttctttgtgt gttgcgtggc 0 0 83.45 58.16 25.29 Both chr15 12 36978788 36978707 View Ser GCT aggttttcag atgtgatggt 0 0 85.34 57.77 27.57 Both chr17 6 8205263 8205344 View Ser GCT aacgtctgta gctaaggaag 0 0 85.34 57.77 27.57 Both chr6 109 29523543 29523462 View Ser GCT cttaacatgt tttcctgagg 0 0 85.34 57.77 27.57 Both chr6 157 27405956 27405875 View Ser GCT ttaaacatgt ctcggccttc 0 0 85.34 57.77 27.57 Both chr6 25 27998113 27998194 View Ser GCT ggggtaccaa ggtgaggtct 0 0 85.34 57.77 27.57 Both chr11_random 1 2963133 2963214 View Ser GCT ttttacgtag gccctatttt 0 0 85.83 58.25 27.58 Both chr6 47 28440793 28440874 View Ser TGA ctgtaggtag attttaccgg 0 0 85.96 56.17 29.79 Both chr6 133 28401581 28401500 View Ser TGA acagaggtgc gttttagccc 0 0 87.56 59.22 28.34 Both chr6 154 27413079 27412998 View Ser TGA aaggaggcac gcgtgctttt 0 0 88.25 57.14 31.11 Both chr10 4 67854516 67854435 View Ser TGA cgtcctcgtg gaagcgggtg 0 0 90.86 62.33 28.53 Both   chr17 24 54272627 54272554 View Thr AGT cacaacgggc caaccgagca 0 0 57.21 43.97 13.24 Eufind chr6 28 28056037 28056110 View Thr AGT acccaagagg tacttgttca 0 0 80.30 60.85 19.45 Both chr6 56 28624903 28624976 View Thr AGT atacatgtga ctttatttct 0 0 81.60 60.97 20.63 Both chr17 33 8159683 8159610 View Thr AGT gctttacgcc cagttaatgg 0 0 81.60 62.00 19.60 Both chr17_random 8 8813923 8813850 View Thr AGT gatttacgcc gagttaatgg 0 0 81.60 62.00 19.60 Both chr6 65 29649345 29649418 View Thr AGT agcttccgtg tggttggcaa 0 0 82.57 63.01 19.56 Both chr6 120 28581548 28581475 View Thr AGT gttcggctgt ggctttctgt 0 0 83.05 63.49 19.56 Both chr6 150 27656121 27656048 View Thr AGT acagtatggt gttgtaattt 0 0 83.05 63.49 19.56 Both chr11 20 7212982 7212910 View Thr AGT agcttccgtg tgggttggca 0 0 83.96 64.40 19.56 Both chr17 29 8246503 8246430 View Thr AGT aagcagcttt ttaattcaat 0 0 84.06 64.45 19.61 Both chr17 7 8205557 8205630 View Thr AGT cctttccggc ccgtgtttcc 0 0 84.06 64.45 19.61 Both chr19 5 33755458 33755531 View Thr AGT ccatacgggc caaccgagcg 0 0 84.06 64.45 19.61 Both chr6 50 28515510 28515582 View Thr CGT attttaacct agcagattga 0 0 63.24 42.90 20.34 Both chrUn 5 10429508 10429580 View Thr CGT tcttttagct tcactttatt 0 0 65.60 53.82 11.78 Both chr17 12 26391468 26391539 View Thr CGT tgggctgtca gagacccaaa 0 0 79.77 59.88 19.89 Both chr6 107 29565090 29565017 View Thr CGT ctgcacagct tagggtacgt 0 0 80.30 62.20 18.10 Both chr16 5 14753637 14753708 View Thr CGT ttgcaacgca gacatccagc 0 0 80.42 57.57 22.85 Both chr6 111 29415898 29415825 View Thr CGT gcttccgcgg gatgttttcc 0 0 80.88 62.42 18.46 Both chr14 4 20007167 20007239 View Thr TGT ttttccgtga tctggaatta 0 0 78.79 56.36 22.43 Both chr14 21 19919154 19919082 View Thr TGT acccggggag gtgttacttt 0 0 79.22 56.68 22.54 Both chrUn 33 6841321 6841249 View Thr TGT acttgcagcc gcgtctgttt 0 0 79.46 56.92 22.54 Both chr1 89 27117548 27117476 View Thr TGT atctcgcgtg nnnnnnnnnn 0 0 83.03 60.49 22.54 Both chr6 113 29396191 29396118 View Thr TGT cacacaagtg taaggttttc 0 0 84.08 63.38 20.70 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr17 32 8241056 8240985 View Trp CCA cactcataca aacgaagaat 0 0 70.89 51.02 19.87 Both chr12 8 99755850 99755921 View Trp CCA agcccagcag agctcttttc 0 0 71.65 49.85 21.80 Both chr6 152 27419700 27419629 View Trp CCA nnnnnnnnnn ggggtgtttg 0 0 72.35 50.55 21.80 Both chr17 5 8204756 8204827 View Trp CCA gtggccggcc gcggtgttct 0 0 74.00 52.21 21.79 Both chr7 1 8373445 8373516 View Trp CCA aggcttccaa aacatgtgat 0 0 74.00 52.21 21.79 Both chr17_random 3 7245109 7245180 View Trp CCA atctcgctgt atgttgggtt 0 0 74.80 53.00 21.80 Both chr6_random 3 13173151 13173080 View Trp CCA ctgccccgga acagtttcta 0 0 74.81 54.94 19.87 Both   chr2b 4 110088675 110088767 View Tyr ATA agttaaggtc gacaagtaca 110088712 110088731 58.27 37.87 20.40 Both chr7 11 147385830 147385901 View Tyr GTA acctatgact acactgttct 0 0 59.60 43.55 16.05 Eufind chr6_random 1 12965418 12965507 View Tyr GTA gtttacaggt ctaaagtttt 12965455 12965471 73.39 46.98 26.41 Both chr6_random 2 12966951 12967039 View Tyr GTA aattacgtgt cggtactttt 12966988 12967003 77.75 51.34 26.41 Both chr1_random 31 17111045 17110952 View Tyr GTA aatcgtgcgc ggtgccttat 17111008 17110988 73.44 47.03 26.41 Both chr14 20 19978884 19978791 View Tyr GTA tagcacgcac agtgcctgat 19978847 19978827 75.35 48.94 26.41 Both chr14 19 19981372 19981279 View Tyr GTA cagcgtgcat agtgcctgac 19981335 19981315 70.90 46.91 23.99 Both chr14 18 19984625 19984532 View Tyr GTA caacgtgcac agtgcctgat 19984588 19984568 74.08 47.67 26.41 Both chr14 5 20008757 20008845 View Tyr GTA ttccgtgctc gaagctgctg 20008794 20008809 75.92 49.51 26.41 Both chr6 14 27693913 27694003 View Tyr GTA tggtgtgaat attcgcggtt 27693950 27693967 76.94 50.54 26.40 Both chr6 15 27700566 27700655 View Tyr GTA gtttacaggt cgaaagtttt 27700603 27700619 75.00 48.59 26.41 Both chr6 16 27702282 27702370 View Tyr GTA aattatgtgt cggtactttt 27702319 27702334 77.75 51.34 26.41 Both chr6 17 27719908 27719997 View Tyr GTA gtagtagtat gttccatttt 27719945 27719961 75.40 49.34 26.06 Both chr8 5 68280047 68280139 View Tyr GTA cgtactcgtc gacaagggcg 68280084 68280103 73.04 46.63 26.41 Both chr8 6 68280669 68280757 View Tyr GTA gtgcccgctc gagacgttgt 68280706 68280721 69.69 43.28 26.41 Both chr2a 3 85086203 85086114 View Tyr GTA cgcggcggag cttcgtgtat 85086166 85086150 77.13 50.72 26.41 Both   chr5_random 1 1265923 1265993 View Undet ??? gctcatgtag gaatcttatg 0 0 74.13 50.53 23.60 Eufind   chrUn 35 6838058 6837985 View Val AAC caaaccgtag gaccgtggtg 0 0 74.80 50.35 24.45 Both chr6 124 28548885 28548813 View Val AAC tggcagtgtt agtggctgct 0 0 80.40 56.99 23.41 Both chr3 6 173332946 173333018 View Val AAC gtacagctcg acctatagct 0 0 86.79 61.60 25.19 Both chr5 4 183910768 183910840 View Val AAC gctcatgtag gaatcttatg 0 0 86.79 61.60 25.19 Both chr5 5 183828090 183828018 View Val AAC gctcacgtag gaaacttacg 0 0 86.79 61.60 25.19 Both chr6 118 28651862 28651790 View Val AAC gtaactgttg agagccattg 0 0 86.79 61.60 25.19 Both chrUn 32 6868102 6868030 View Val AAC tttcgcaacc accatgtgtt 0 0 86.79 61.60 25.19 Both chr6 121 28577998 28577926 View Val AAC aagtaagggt cgtagggtta 0 0 87.19 62.00 25.19 Both chr1_random 21 33381702 33381774 View Val CAC tgtatgtgca tggttttttg 0 0 34.03 24.66 9.37 Both chr1_random 5 1270392 1270464 View Val CAC tgtatgtgca tggttttttg 0 0 34.03 24.66 9.37 Both chr6 26 28043487 28043559 View Val CAC tgtggaatga tattttaggc 0 0 53.93 44.66 9.27 Both chr6 137 28170980 28170908 View Val CAC aaatgtaatg acttgtattt 0 0 66.13 46.63 19.50 Eufind chr1 13 89904464 89904536 View Val CAC ttaccgagtg aagcggtaga 0 0 81.44 62.01 19.43 Both chr19 14 4712369 4712297 View Val CAC actcttaccg aatctgctgt 0 0 81.94 58.92 23.02 Both chr6 142 28090508 28090436 View Val CAC tcccgaagtt ttctttactg 0 0 84.94 59.75 25.19 Both chr5 2 183813748 183813820 View Val CAC aatcaagccg gttctacttt 0 0 87.39 62.20 25.19 Both chr5 6 183823765 183823693 View Val CAC cgccatgcag cattctccta 0 0 87.39 62.20 25.19 Both chr5_random 5 1634491 1634419 View Val CAC cgccatgcag cattctccta 0 0 87.39 62.20 25.19 Both chr6 9 27661223 27661295 View Val CAC accctagcgg tttttttttt 0 0 87.39 62.20 25.19 Both chrUn 14 11606630 11606558 View Val CAC gttgcgcgtg tgaggttttt 0 0 87.39 62.20 25.19 Both chrUn 30 6872214 6872142 View Val CAC aaccaaggtg cgttttggtc 0 0 87.39 62.20 25.19 Both chr5_random 3 16173797 16173869 View Val CAC acccaagaaa acttctactt 0 0 88.60 64.59 24.01 Both chrUn 11 48011171 48011099 View Val CAC acccaagcaa acttctactt 0 0 88.60 64.59 24.01 Both chr6 36 28181678 28181750 View Val TAC tagtacacag acttgcaatt 0 0 70.65 47.44 23.21 Both chr10 10 6180600 6180528 View Val TAC tgccatatgt cggtatggtc 0 0 78.45 59.08 19.37 Both chr11 4 16983609 16983681 View Val TAC ttccgcacgc cggcgtggtt 0 0 82.67 57.63 25.04 Both chr11 6 16991707 16991779 View Val TAC ttccgcacgc cggcgtggtt 0 0 82.67 57.63 25.04 Both chr11 5 16983964 16984036 View Val TAC tgtcacgtgc cggggtgtta 0 0 85.12 60.08 25.04 Both chr11 7 16992062 16992134 View Val TAC tgtcatgtgc cggggtgtta 0 0 85.12 60.08 25.04 Both chrX 3 18672253 18672181 View Val TAC nnnnnnnnnn tagccgcagg 0 0 85.12 60.08 25.04 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.