Genomic tRNA Database: Plasmodium falciparum (Oct 2007)

tRNAscan-SE Analysis of Plasmodium falciparum (Oct 2007)

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Genome DB

>> Genome Seq

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr7.trna7 (84843-84771)	Length: 73 bp
Type: Ala	Anticodon: AGC at 34-36 (84810-84808)	Score: 65.16
Seq: GGGCGACTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGGTCGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr6.trna1 (861014-861085)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (861046-861048)	Score: 77.31
Seq: GGGCTAGTAGTGTAGTGGTATCACGTTCGCTTCGCATGCGAAAGTtCCCGGGTTCGATTCCCGGCTGGTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr4.trna3 (524619-524690)	Length: 72 bp
Type: Ala	Anticodon: TGC at 33-35 (524651-524653)	Score: 78.45
Seq: GGGCAGGTGGTGTAGTGGTATCACGCTTGATTTGCATTCAAGAGGtCCGGGGTTCAATTCCCCGTCTGTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr5.trna3 (1208383-1208455)	Length: 73 bp
Type: Arg	Anticodon: TCG at 34-36 (1208416-1208418)	Score: 66.19
Seq: GACGGCGTAGCCTAATGGAtAAGGCGTCGGTCTTCGGAACCGAAGAtTGCGGGTTCGAGTCCCGTCGTCGTTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr13.trna2 (1609638-1609711)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (1609672-1609674)	Score: 81.06
Seq: GCCTCTGTGGCGCAATTGGAtAGCGCGTTGGACTTCTAATCCAAAGGcTGCGGGTTCGAATCCCGCCAGGGGTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr4.trna1 (181288-181361)	Length: 74 bp
Type: Asn	Anticodon: GTT at 35-37 (181322-181324)	Score: 80.68
Seq: GGTTCCGTAGCTCAGTTGGTtAGAGCGTGCGGCTGTTAACCGCAAGGtCGTTGGTTCGATCCCAGCCGGTACCG
Str: >>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.

chr7.trna2 (575637-575708)	Length: 72 bp
Type: Asp	Anticodon: GTC at 34-36 (575670-575672)	Score: 69.69
Seq: TCCGAGATAGTATAGTGGCaAGTATTTCCGCCTGTCACGCGGAAGACCCGGGTTCAATTCCCGGTCTCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr2.trna1 (164269-164340)	Length: 72 bp
Type: Gln	Anticodon: CTG at 34-36 (164302-164304)	Score: 72.54
Seq: GGTTCTGTAGTGTAGTGGTtAGCACTGCAGACTCTGACTCTGCAAACCTGGGTTCAAATCCCAGCAGAACCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr12.trna3 (2113786-2113715)	Length: 72 bp
Type: Gln	Anticodon: TTG at 34-36 (2113753-2113751)	Score: 70.90
Seq: GGTTTCGTAGTGTAGTGGTtAGCACTGAGGACTTTGAATCCTCCAACCCGGGTTCGAGTCCCGGCGAGACCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr4.trna4 (525122-525051)	Length: 72 bp
Type: Glu	Anticodon: CTC at 34-36 (525089-525087)	Score: 81.01
Seq: TCCCACGTGGTCTAGTGGCtAGGATATTCGGCTCTCACCCGAAAGGCCCGGGTTCAATTCCCGGCGTGGGAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr5.trna2 (1150228-1150300)	Length: 73 bp
Type: Glu	Anticodon: TTC at 35-37 (1150262-1150264)	Score: 74.15
Seq: TCCCATGTAGTCTAGGCGGTtAGGATATTCGGCTTTCACCCGAACGACCCGGGTTCGAGTCCCGGCGTGGGAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr11.trna1 (140971-141042)	Length: 72 bp
Type: Gly	Anticodon: TCC at 34-36 (141004-141006)	Score: 69.10
Seq: GCGTCAATAGTCTAACGGCcATGATACCTGCCTTCCAAGCAGGTGACCCGGGTTCGACTCCCGGTTGACGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr3.trna2 (528649-528576)	Length: 74 bp
Type: Ile	Anticodon: AAT at 35-37 (528615-528613)	Score: 84.11
Seq: GGTCCTATAGCTCAGTTGGTtAGAGCGTACGGCTAATAACCGTAAGGtCGGCGGTTCGAGACCGCCTGGGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr4.trna5 (476827-476755)	Length: 73 bp
Type: Ile	Anticodon: TAT at 34-36 (476794-476792)	Score: 81.89
Seq: GATCCATTAGCTCAGTGGTtAGAGCGTCGGTCTTATGTACCGAAGGtCGTGGGTTCGAAACCCACATGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr7.trna3 (576498-576577)	Length: 80 bp
Type: Leu	Anticodon: AAG at 35-37 (576532-576534)	Score: 66.09
Seq: GACAGAATGGCCGAGTGGTctAAGGCGCAACGTTAAGGCCGTTGTCCGAAAGGGCGTGGGTTCGAACCCCACTTCTGTCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<.

chr11.trna2 (142556-142473)	Length: 84 bp
Type: Leu	Anticodon: CAA at 35-37 (142522-142520)	Score: 72.42
Seq: GCACGGATGGCTGAGTGGTctAAAGCGTCAGACTCAAGATCTGATGAACGTAAGTTCGCATGGGTTCGAACCCCATTTCGTGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr6.trna3 (861762-861682)	Length: 81 bp
Type: Leu	Anticodon: CAG at 35-37 (861728-861726)	Score: 58.06
Seq: GACAGAATGGCCGAGCGGTctAAGGCGCTACAGTCAGATTGTAGTCTGTATAAGGCGTGGGTTCGAATCCCGCTTCTGTCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>.....<<..>>>>>.......<<<<<<<<<<<<.

chr5.trna4 (1151303-1151221)	Length: 83 bp
Type: Leu	Anticodon: TAA at 34-36 (1151270-1151268)	Score: 70.73
Seq: GCACGGGTGCCCGAGTGGTtAAGGGGGTGGACTTAAGATCCTCTGGTCACTAGACCGCGTGGGTTCGAACCCCACCTCGTGCA
Str: >>>>>>>..>>>..........<<<.>.>>>.......<<<.<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr5.trna1 (451353-451432)	Length: 80 bp
Type: Leu	Anticodon: TAG at 35-37 (451387-451389)	Score: 71.48
Seq: GTCAGGATGGCCGAGTGGTctAAGGCGCAGCGTTTAGGCCGCTGTCCGTAAGGGCGTGGGTTCGAACCCCACTCCTGACA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>.><.<<..>>>>>.......<<<<<<<<<<<<.

chr13.trna1 (1553660-1553731)	Length: 72 bp
Type: Met	Anticodon: CAT at 33-35 (1553692-1553694)	Score: 60.25
Seq: AGCAGCGTAGCTCAGAGGAAGAGTGGGGGGCTCATAACCCCCAGGaCCGTGGATCGAAACCACGCGCTGCTA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr14.trna2 (1545179-1545252)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (1545213-1545215)	Score: 80.56
Seq: GGGTAATTGGCGCAGTTGGTtAGCGCGCGGGTCTCATAATCCCGAGGtCGTGAGTTCGATCCTCACATTACCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr5.trna5 (604021-603949)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (603988-603986)	Score: 82.85
Seq: GCCGTGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCCCTGGTTCGATCCCTGGTCACGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<.

chr14.trna1 (778292-778363)	Length: 72 bp
Type: Pro	Anticodon: AGG at 33-35 (778324-778326)	Score: 73.97
Seq: GGCTACTTAGTCTAGTGGTATGATTCTCTCTTAGGGTGGGAGAGGtCCCGGGTTCGATTCCCGGAGTAGCCC
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr12.trna1 (666877-666948)	Length: 72 bp
Type: Pro	Anticodon: CGG at 33-35 (666909-666911)	Score: 70.28
Seq: GGCTACTTGATCTAGTGGTATGATTCTTGCTTCGGGTGCAAGACGtCCCGGGTTCGATTCCCGGAGTAGCCC
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr13.trna4 (1555301-1555230)	Length: 72 bp
Type: Pro	Anticodon: TGG at 33-35 (1555269-1555267)	Score: 77.73
Seq: GGCTACTTAGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAATTCCCGGAGTAGCCC
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr4.trna2 (476115-476196)	Length: 82 bp
Type: Ser	Anticodon: AGA at 34-36 (476148-476150)	Score: 78.93
Seq: GACAGTGTGTCCGAGTGGTtAAGGAGTCAGACTAGAAATCTGGTAGGCTTTGCCTGCGCAGGTTCGAATCCTGCCGCTGTCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.

chr13.trna5 (1502494-1502413)	Length: 82 bp
Type: Ser	Anticodon: CGA at 34-36 (1502461-1502459)	Score: 77.78
Seq: GACAGTTTGTCCGAGTGGTtAAGGAGGTTGACTCGAAATCAACTGGGCTCTGCCCGCACAGGTTCAAATCCTGTAGCTGTCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.

chr7.trna6 (577658-577577)	Length: 82 bp
Type: Ser	Anticodon: GCT at 34-36 (577625-577623)	Score: 80.03
Seq: GATAACGTGCCCGAGTGGTtAAGGGGTTGGACTGCTAATCCAATGGGTTCTGCCCGCGCAGGTTCGATTCCTGCCGTTGTCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.

chr6.trna2 (883642-883561)	Length: 82 bp
Type: Ser	Anticodon: TGA at 34-36 (883609-883607)	Score: 78.00
Seq: GACAGTTTGCCCGAGTGGTtAAGGGGTTGGACTTGAAATCCAATGAGCTTTGCTTGCGCAGGTTCGAATCCTGCAGCTGTCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<.

chr13.trna3 (2111455-2111383)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (2111422-2111420)	Score: 78.10
Seq: GCCATCTTAGCACAGTTGGTAATGCGTTTGATTCGTAATCAAAAGAtCGTGGGTTCGACTCCCACAGGTGGCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr7.trna5 (1228101-1228030)	Length: 72 bp
Type: Thr	Anticodon: TGT at 33-35 (1228069-1228067)	Score: 82.32
Seq: GCCACCTTAGCACAGTGGTAGTGCGTTGGTCTTGTAAACCAAAGGtCGGGAGTTCGATCCTCCCAGGTGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr7.trna1 (85347-85430)	Length: 84 bp
Type: Tyr	Anticodon: GTA at 34-36 (85380-85382)	Score: 74.68
Possible intron: 38-48 (85384-85394)
Seq: CCGATGATAGCTCAGTTGGTAGAGCGGCAGACTGTAGttgaaatggttATCTGTTGGtCACCGGTTCGATTCCGGTTCATCGGA
Str: >>>>>>>..>>>>........<<<<.>>>>>..................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr12.trna2 (2112863-2112935)	Length: 73 bp
Type: Val	Anticodon: AAC at 34-36 (2112896-2112898)	Score: 76.70
Seq: GCGGGCATGGTCTAGTGGCtATGACGCCTGCCTAACACGCAGGAGAtCCCGAGTTCGATCCTCGGTGCCCGTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr3.trna1 (527889-527961)	Length: 73 bp
Type: Val	Anticodon: CAC at 34-36 (527922-527924)	Score: 77.44
Seq: GCGAGCATGGTCTAGTGGCtATGACGTTCGCCTCACACGCGAAAGAtCCCGAGTTCGATCCTCGGTGCTCGTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr7.trna4 (1227078-1227150)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (1227111-1227113)	Score: 76.94
Seq: GCGGGCATGGTCTAGTGGCtATGACGCCTGCCTTACACGCAGGAGAtCCCGAGTTCGATCCTCGGTGCCCGTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.