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tRNAscan-SE Analysis of Plasmodium falciparum (Oct 2007)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr7 7 84843 84771 Ala AGC atttaatgaa aatgttgaaa 0 0 65.16 39.53 25.63 Both chr6 1 861014 861085 Ala CGC attactcctt tgaaggacaa 0 0 77.31 57.02 20.29 Both chr4 3 524619 524690 Ala TGC accatattaa tataaaaaaa 0 0 78.45 57.76 20.69 Both   chr5 3 1208383 1208455 Arg TCG taatgattat tttaaaataa 0 0 66.19 47.56 18.63 Both chr13 2 1609638 1609711 Arg TCT ttatcttgaa aaattataat 0 0 81.06 64.29 16.77 Both   chr4 1 181288 181361 Asn GTT taattcttaa atcttttttt 0 0 80.68 64.83 15.85 Both   chr7 2 575637 575708 Asp GTC aaattttgaa attttttttt 0 0 69.69 44.28 25.41 Both   chr2 1 164269 164340 Gln CTG atcataatta atttatattt 0 0 72.54 48.37 24.17 Both chr12 3 2113786 2113715 Gln TTG atgtgcataa tttataaaaa 0 0 70.90 48.63 22.27 Both   chr4 4 525122 525051 Glu CTC acaaattata aaataaaaaa 0 0 81.01 58.90 22.11 Both chr5 2 1150228 1150300 Glu TTC tatctttgaa aatttttttt 0 0 74.15 53.51 20.64 Both   chr11 1 140971 141042 Gly TCC attttttaag gccaaacctt 0 0 69.10 45.67 23.43 Both   chr3 2 528649 528576 Ile AAT cattaataga aataaaaaaa 0 0 84.11 59.33 24.78 Both chr4 5 476827 476755 Ile TAT cttcatataa tataaaatga 0 0 81.89 54.73 27.16 Both   chr7 3 576498 576577 Leu AAG gttattatat ttttttaatt 0 0 66.09 36.52 29.57 Both chr11 2 142556 142473 Leu CAA gttttattaa tatttaaaaa 0 0 72.42 44.12 28.30 Both chr6 3 861762 861682 Leu CAG tataatgttc aacaaaattt 0 0 58.06 33.90 24.16 Both chr5 4 1151303 1151221 Leu TAA atttttatga aaaaataaaa 0 0 70.73 42.36 28.37 Both chr5 1 451353 451432 Leu TAG ttaccatgtt aggttttggg 0 0 71.48 39.21 32.27 Both   chr13 1 1553660 1553731 Met CAT ttttattgaa gattttgaaa 0 0 60.25 30.13 30.12 Both chr14 2 1545179 1545252 Met CAT aataagttat accgggccta 0 0 80.56 53.80 26.76 Both   chr5 5 604021 603949 Phe GAA aaactaccaa agattattaa 0 0 82.85 63.77 19.08 Both   chr14 1 778292 778363 Pro AGG aataagttga acttttaaat 0 0 73.97 49.05 24.92 Both chr12 1 666877 666948 Pro CGG aattgcatta aaaaaaaaaa 0 0 70.28 45.31 24.97 Both chr13 4 1555301 1555230 Pro TGG atatgtagtt atttttttct 0 0 77.73 54.84 22.89 Both   chr4 2 476115 476196 Ser AGA aaaagattga aataaaaaaa 0 0 78.93 47.99 30.94 Both chr13 5 1502494 1502413 Ser CGA tattgtttga tatttttgaa 0 0 77.78 42.98 34.80 Both chr7 6 577658 577577 Ser GCT ttaaggttaa aaaaaatttt 0 0 80.03 52.62 27.41 Both chr6 2 883642 883561 Ser TGA aataagagtt gcaatttttt 0 0 78.00 44.22 33.78 Both   chr13 3 2111455 2111383 Thr CGT ttttatttaa ttgtaattta 0 0 78.10 58.94 19.16 Both chr7 5 1228101 1228030 Thr TGT tctaagtgtt ataattttaa 0 0 82.32 53.31 29.01 Both   chr7 1 85347 85430 Tyr GTA aatttatata aattttttaa 85384 85394 74.68 44.34 30.34 Both   chr12 2 2112863 2112935 Val AAC tttctatgga tatttaaata 0 0 76.70 50.80 25.90 Both chr3 1 527889 527961 Val CAC tcctaaatat ttaaataaaa 0 0 77.44 51.67 25.77 Both chr7 4 1227078 1227150 Val TAC tttttattaa tttttacatt 0 0 76.94 51.04 25.90 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.