GtRNAdb

tRNAscan-SE Analysis of Pasteurella multocida

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>> Genome Seq
tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 38 1312286 1312211 Ala GGC tttctgatgt aatcatcttc0 0 86.24 67.7718.47  
chr 25 1692340 1692415 Ala TGC tgatgtgaat aatcatcatt0 0 93.20 75.5117.69  
chr 3 343192 343267 Ala TGC tgatgtgaat aatcatcatt0 0 93.20 75.5117.69  
chr 9 543721 543796 Ala TGC tgatgtgaat aatcatcatt0 0 93.20 75.5117.69  
 
chr 40 1246569 1246493 Arg ACG aaatcgtgct ttttaattag0 0 86.34 63.6322.71  
chr 41 1246427 1246351 Arg ACG atatcaatac tttcattctc0 0 86.34 63.6322.71  
chr 5 541506 541582 Arg CCG gacgcgatga gagagtcaat0 0 91.09 68.6822.41  
chr 30 2170800 2170724 Arg TCT catttgaaat ttaattttat0 0 92.02 69.3722.65  
 
chr 23 1513873 1513948 Asn GTT gcaccacgat aattcttaaa0 0 86.00 58.4527.55  
chr 54 503044 502969 Asn GTT acagaatttt actttttctt0 0 86.00 58.4527.55  
 
chr 56 131916 131840 Asp GTC tcacctgtgc attttattct0 0 89.09 70.3018.79  
chr 36 1937478 1937402 Asp GTC caaatttcgc cttatttaag0 0 91.98 75.6016.38  
chr 57 131824 131748 Asp GTC attctactac acgaatttca0 0 91.98 75.6016.38  
 
chr 16 1169500 1169573 Cys GCA ccaaactaac tacgctgata0 0 52.06 26.9925.07  
 
chr 52 792449 792375 Gln TTG atatagttgt tactatcaaa0 0 70.27 41.7628.51  
chr 53 792329 792255 Gln TTG atatttcaat tcacttttct0 0 70.27 41.7628.51  
 
chr 26 1762988 1763063 Glu TTC tttacatgtt tttaaagatg0 0 56.27 28.7827.49  
chr 35 1941137 1941062 Glu TTC tttacatgtt tttaaagatg0 0 56.27 28.7827.49  
chr 46 1080246 1080171 Glu TTC tttacatgtt tttaaagatg0 0 56.27 28.7827.49  
 
chr 11 1059797 1059872 Gly GCC aaaatattat atatttcaac0 0 92.69 68.5324.16  
chr 12 1059903 1059978 Gly GCC catattctac aattttctta0 0 92.69 68.5324.16  
chr 15 1169417 1169492 Gly GCC aacagcgaat aactaacggc0 0 92.69 68.5324.16  
chr 47 1007359 1007284 Gly GCC cttatgcaac atatctcata0 0 92.69 68.5324.16  
chr 33 1968911 1968837 Gly TCC atttaggact aacgctgata0 0 64.85 36.4228.43  
 
chr 6 541618 541693 His GTG taaatcaatg aattttttta0 0 85.05 63.4321.62  
 
chr 2 343054 343130 Ile GAT aaatcctttt ctcaagcgaa0 0 94.77 71.1923.58  
chr 24 1692202 1692278 Ile GAT aaatcctttt ctcaagcgaa0 0 94.77 71.1923.58  
chr 8 543583 543659 Ile GAT aaatcctttt ctcaagcgaa0 0 94.77 71.1923.58  
 
chr 55 347864 347780 Leu CAA atcaatatta ttgataaata0 0 74.08 49.3824.70  
chr 1 234397 234482 Leu GAG aaaagattaa tttaaaagag0 0 55.73 23.6132.12  
chr 17 1169617 1169703 Leu TAA aaaattgtgc tttaaaatat0 0 71.02 34.8436.18  
chr 48 1007257 1007171 Leu TAA tagtgataat ttaaaatggc0 0 71.02 34.8436.18  
chr 51 792563 792479 Leu TAG caccatattt ttcattagct0 0 68.26 45.3722.89  
 
chr 43 1138787 1138712 Lys TTT gatatgaagc ctcaacgcaa0 0 97.43 76.6320.80  
chr 44 1138668 1138593 Lys TTT ttaatgcaat cttaattcaa0 0 97.43 76.6320.80  
chr 45 1138549 1138474 Lys TTT ttaatgcaat cttctttttc0 0 97.43 76.6320.80  
 
chr 49 898232 898156 Met CAT atatttcgga ctttacagac0 0 83.58 58.8524.73  
chr 13 1096294 1096370 Met CAT cctccacaga gattcaagaa0 0 88.17 63.4324.74  
chr 27 1862907 1862983 Met CAT atttcatata aagcccttat0 0 93.03 71.1421.89  
chr 50 792645 792569 Met CAT aatagaaaat tatttgcggg0 0 95.39 75.3120.08  
 
chr 22 1513793 1513868 Phe GAA ctgatgagtt cgattcctcc0 0 85.75 62.2723.48  
 
chr 29 2170907 2170831 Pro TGG acacattcgt cttcttttat0 0 90.87 66.2524.62  
chr 7 541708 541784 Pro TGG tttttacagt tttttttgtt0 0 90.87 66.2524.62  
 
chr 28 1994469 1994559 SeC(p) TCA cttctagcac gccaatccat0 0 63.71 0.000.00  
 
chr 39 1246712 1246620 Ser GCT aaccgattgc tttactcaag0 0 73.50 42.0731.43  
chr 14 1120194 1120283 Ser GGA tattcaaaac ttcaataata0 0 69.27 33.8235.45  
chr 4 470662 470751 Ser TGA tctacatcac tagaatgtcg0 0 71.65 38.9832.67  
chr 42 1162207 1162118 Ser TGA cttaaatcac tcaaattttg0 0 71.65 38.9832.67  
 
chr 34 1968833 1968758 Thr GGT cgctccaaac gtcctagtat0 0 96.44 70.7925.65  
chr 31 1969147 1969072 Thr TGT cttacgagat ttcattctcg0 0 91.83 73.9817.85  
 
chr 37 1937367 1937292 Trp CCA ctttctttct ttattatgta0 0 79.69 60.2519.44  
 
chr 32 1969042 1968958 Tyr GTA catttaacgc ttttttaaat0 0 69.57 37.5632.01  
 
chr 10 757576 757652 Val GAC atttcaggat tttcactttc0 0 90.13 70.4519.68  
chr 18 1314001 1314076 Val TAC cacaacattt cttttcaaca0 0 90.00 72.2017.80  
chr 19 1314118 1314193 Val TAC aattttatgc cttttatgtg0 0 90.00 72.2017.80  
chr 20 1314245 1314320 Val TAC agtctcaagt cttagacttg0 0 90.00 72.2017.80  
chr 21 1314384 1314459 Val TAC aaaatctgaa cttcttttct0 0 90.00 72.2017.80  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.