GtRNAdb

tRNAscan-SE Analysis of Pasteurella multocida

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGATATAGCTCAGTTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCGTCGGTTCGATCCCGATTATCTCCACCA chr.trna38-AlaGGC Sc: 86.24 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna9-AlaTGC Sc: 93.20 GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna3-AlaTGC Sc: 93.20 GGGGATATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTATCTCCACCA chr.trna25-AlaTGC Sc: 93.20

Arg tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCAGAGGTTCGAATCCTCTCGGGTGCGCCA chr.trna41-ArgACG Sc: 86.34 GCACCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCAGAGGTTCGAATCCTCTCGGGTGCGCCA chr.trna40-ArgACG Sc: 86.34 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCTCGTAGCTCAGTTGGAtAGAGCGTTGGCCTCCGGAGCCAAAG...........GtCGCAGGTTCAAATCCTGTCGAGCGCGCCA chr.trna5-ArgCCG Sc: 91.09 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCTTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTAG...........GtCATTGGTTCGAATCCAATAGGGCGTGCCA chr.trna30-ArgTCT Sc: 92.02

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCTCCTTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCGCTGGTTCAAGTCCAGCAGGAGGAGCCA chr.trna54-AsnGTT Sc: 86.00 TCCTCCTTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCGCTGGTTCAAGTCCAGCAGGAGGAGCCA chr.trna23-AsnGTT Sc: 86.00

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGCGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCGTTCCGCCA chr.trna57-AspGTC Sc: 91.98 GGAGCGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCGTTCCGCCA chr.trna36-AspGTC Sc: 91.98 GGAGTGGTAGTTCAGCTGGTtAGAATACCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCATTCCGCCA chr.trna56-AspGTC Sc: 89.09

Cys tRNAs

>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGTGTTAGCAAAGCGGTT.ATGCACTGGATTGCAAATCCATGT...........AGCTCGGTTCGACTCCGGGACACGCCTCCA chr.trna16-CysGCA Sc: 52.06

Gln tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTATCGCCAAGCGGTA.AGGCACCGGGTTTTGATCTCGGCA...........TtCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna53-GlnTTG Sc: 70.27 TGGGGTATCGCCAAGCGGTA.AGGCACCGGGTTTTGATCTCGGCA...........TtCCTAGGTTCGAATCCTAGTACCCCAGCCA chr.trna52-GlnTTG Sc: 70.27

Glu tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna46-GluTTC Sc: 56.27 GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna35-GluTTC Sc: 56.27 GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTGGGGACGCCA chr.trna26-GluTTC Sc: 56.27

Gly tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGTTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna47-GlyGCC Sc: 92.69 GCGGGAATAGCTCAGTTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna15-GlyGCC Sc: 92.69 GCGGGAATAGCTCAGTTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna12-GlyGCC Sc: 92.69 GCGGGAATAGCTCAGTTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA chr.trna11-GlyGCC Sc: 92.69 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCATCGTATAAT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCTGCCCGCTCCA chr.trna33-GlyTCC Sc: 64.85

His tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCTATAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCAAGTCCCATTAGCCACCCCA chr.trna6-HisGTG Sc: 85.05

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna8-IleGAT Sc: 94.77 GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna24-IleGAT Sc: 94.77 GGGTCTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGACCCACCA chr.trna2-IleGAT Sc: 94.77

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCTCTGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGTGTCC.ATC.......GGACGTGCGAGTTCAAGTCTCGC.CCAGAGCACCA chr.trna1-LeuGAG Sc: 55.73 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.>.........<.<<<..>.>>>.......<<<.<.<<<<<<<.... GCGGGACTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGC.........GAGGTGTGTGGGTTCAAGTCCCTC.GTCCCGCACCA chr.trna51-LeuTAG Sc: 68.26 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCTGGGTGGCGAAATTGGTaGACGCAGTTGATTCAAAATCAACCGCCTT.........CGGGTGTGCCGGTTCGAGTCCGGC.CCTAGGCACCA chr.trna55-LeuCAA Sc: 74.08 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCGAGTGGTGAAATCGGTaGACACAAGGGATTTAAAATCCCTCGCTT.TTCG......AAGCGTGCCAGTTCAAGTCTGGC.CTCGGGCACCA chr.trna48-LeuTAA Sc: 71.02 GCCCGAGTGGTGAAATCGGTaGACACAAGGGATTTAAAATCCCTCGCTT.TTCG......AAGCGTGCCAGTTCAAGTCTGGC.CTCGGGCACCA chr.trna17-LeuTAA Sc: 71.02

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna45-LysTTT Sc: 97.43 GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna44-LysTTT Sc: 97.43 GGGTCGTTAGCTCAGTCGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGAAGGTTCGAATCCTTCACGACCCACCA chr.trna43-LysTTT Sc: 97.43

Met tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GGCTATGTAGCTCAGTT.GGTtAGAGCACAACACTCATAATGTTGGG...........GtCACAGGTTCGAATCCCGTCATAGCCACCA chr.trna50-MetCAT Sc: 95.39 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCATAGCTCAGTC.GGTcAGAGCAGTCGACTCATAATCGATTG...........GtCACAGGTTCAAGTCCTGTTGGGGGCACCA chr.trna27-MetCAT Sc: 93.03 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna13-MetCAT Sc: 88.17 CGCGGGGTGGAGCAGCTtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GcCGTCGGTTCAAATCCGGCCCCCGCAACCA chr.trna49-MetCAT Sc: 83.58

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGT...........GtCGGTGGTTCGATTCCGCCTCGAGGCACCA chr.trna22-PheGAA Sc: 85.75

Pro tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGCGAGTAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGG...........GtCGTAGGTTCAAATCCTATCTCGCCGACCA chr.trna7-ProTGG Sc: 90.87 CGGCGAGTAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGG...........GtCGTAGGTTCAAATCCTATCTCGCCGACCA chr.trna29-ProTGG Sc: 90.87

SeC tRNAs

>>>>>>>>>>.............<<<..>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<...<<<<<<<.... GGAGGAGCGTCGTTtccGGTgaAGCG.GCAGGACTTCAAATCCTGTTGAGGTTGCCAGCAATCTCGGGTGGGTTCGACTCCCAT..tCTCCTCC.... chr.trna28-SeC(p)TCA Sc: 63.71

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGTGAGATGTCCGAGTGGTtgA.AGGAGCACGCCTGGAAAGCGTGTATATGC.GAAA..GTGTATCGAGGGTTCGAATCCCTC..TCTCACCGCCA chr.trna14-SerGGA Sc: 69.27 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGGAATGGTCGAGTGGTtgA.AGGCACCGGTCTTGAAAACCGGCGAGGGT.TTAC..GCCCTCCGTGAGTTCGAATCTCAC..TTCCTCCGCCA chr.trna42-SerTGA Sc: 71.65 GGAGGAATGGTCGAGTGGTtgA.AGGCACCGGTCTTGAAAACCGGCGAGGGT.TTAC..GCCCTCCGTGAGTTCGAATCTCAC..TTCCTCCGCCA chr.trna4-SerTGA Sc: 71.65 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGTGAGATGGCCGAGAGGCtgA.AGGCGCTCCCCTGCTAAGGGAGTATGGGGTCAAAaACTCCATCGAGGGTTCGAATCCCTC..TCTCACCGCCA chr.trna39-SerGCT Sc: 73.50

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGATATAGCTCAGTTGGTAGAGCGCACCCTTGGTAAGGGTGAG...........GtCGGCGGTTCAAATCCGCCTATCAGCACCA chr.trna34-ThrGGT Sc: 96.44 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<.... GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGTCGGCACCA chr.trna31-ThrTGT Sc: 91.83

Trp tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGT...........GtTGGGAGTTCGAGCCTCTCCGCCCCTGCCA chr.trna37-TrpCCA Sc: 79.69

Tyr tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGATTCCCGAGCGGCcaA.AGGGAGCAGACTGTAAATCTGCCGGCTCA.....GCCTtCGAAGGTTCGAATCCTTC.TCCCTCCACCA chr.trna32-TyrGTA Sc: 69.57

Val tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<.... GCGACTATAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGG...........GtCACTGGTTCGAGTCCAGCTAGTCGCACCA chr.trna10-ValGAC Sc: 90.13 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna21-ValTAC Sc: 90.00 GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna20-ValTAC Sc: 90.00 GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna19-ValTAC Sc: 90.00 GGGCGATTAGCTCAGTTGGG.AGAGCACCTCCCTTACAAGGAGGGG...........GtCACTGGTTCGAGACCGGTATCGCCCACCA chr.trna18-ValTAC Sc: 90.00

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.