>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Oryza sativa

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 1 181074 181154 Leu AAG ggccaggaaa tccccttttt 0 0 65.69 38.63 27.06 Both chr1 2 181263 181344 Ser AGA atttcaccaa ttttcctttt 0 0 83.72 51.27 32.45 Both chr1 3 415058 415130 Glu CTC gcttcaacaa ttttttccac 0 0 79.07 55.53 23.54 Both chr1 4 1774494 1774567 Thr AGT gctaacagtt tatttttatt 0 0 76.42 49.45 26.97 Both chr1 5 2278100 2278171 Asp GTC aaccaacaag tctttttttt 0 0 70.78 52.44 18.34 Both chr1 6 3420334 3420415 Ser TGA catgcaaaga catttttttc 0 0 80.82 48.39 32.43 Both chr1 7 3733988 3734059 Pro AGG catcacacaa cgtaaattcg 0 0 71.75 43.88 27.87 Both chr1 8 4401333 4401403 Gly GCC ttcatcaagg ttttttcagt 0 0 59.75 46.99 12.76 Eufind chr1 9 5768842 5768914 Glu CTC aaaccaagct atttttttct 0 0 79.07 55.53 23.54 Both chr1 10 7433983 7434055 Glu CTC gataccagca ttttttgctt 0 0 79.07 55.53 23.54 Both chr1 11 7456418 7456489 Gln CTG ggatataagc ttttttgcat 0 0 71.08 51.14 19.94 Both chr1 12 7763276 7763347 Thr GGT tgaataagaa ttttttactt 0 0 60.49 29.15 31.34 Both chr1 13 12093937 12094008 His GTG aacacaagtt ttattctttt 0 0 63.70 36.75 26.95 Both chr1 14 13314263 13314336 Asn GTT cgtactgaaa tattttttct 0 0 81.83 55.73 26.10 Both chr1 15 13319286 13319359 Asn GTT agatacaaca ccttattttt 0 0 81.83 55.73 26.10 Both chr1 16 14437509 14437581 Ala CGC cctcaccgtt tcgtctgttc 0 0 65.78 42.22 23.56 Both chr1 17 15837233 15837306 Asn GTT acaaacagaa atttttttaa 0 0 81.83 55.73 26.10 Both chr1 18 18685457 18685528 Asn GTT agtccgttct atttgattca 0 0 77.16 56.33 20.83 Both chr1 19 24369681 24369751 Gly GCC acaacaagag aaatcttagt 0 0 71.56 51.49 20.07 Both chr1 20 27233215 27233287 Arg ACG aagcatccag ttcttttgtc 0 0 74.06 52.84 21.22 Both chr1 21 28123650 28123722 Glu CTC gtatgcatga ttttttttgt 0 0 72.16 48.62 23.54 Both chr1 22 29158808 29158879 Pseudo ??? gatagcgaaa aattttccag 0 0 25.66 32.79 -7.13 Eufind chr1 23 30101137 30101209 Val TAC tgacatgaaa atttttttgt 0 0 76.67 46.07 30.60 Both chr1 24 30203689 30203761 Phe GAA ttgaacaaat ctttatttcc 0 0 77.43 54.21 23.22 Both chr1 25 30216503 30216575 Lys CTT agatgtgcaa aattctgttt 0 0 83.73 61.76 21.97 Both chr1 26 31126152 31126221 Lys CTT atatacagaa tgtggctctt 0 0 64.90 49.51 15.39 Both chr1 27 31516921 31516993 Arg ACG cttcaactac ttttgttatt 0 0 74.06 52.84 21.22 Both chr1 28 32332529 32332602 Thr AGT taagccaaga atttgagttt 0 0 76.42 49.45 26.97 Both chr1 29 32333096 32333167 Gln CTG tgtcacaaat tttttttctc 0 0 70.11 50.53 19.58 Both chr1 30 32450374 32450458 Met CAT tttcaacaac taaatccgag 32450412 32450422 61.43 41.32 20.11 Both chr1 31 32451191 32451275 Met CAT cgaacacaag tatgaaactc 32451229 32451239 61.93 41.82 20.11 Both chr1 32 32454597 32454680 Pseudo CAT ttggacacaa caaaccttgc 32454635 32454645 33.93 39.63 -5.70 Eufind chr1 33 33510882 33510954 Phe GAA acaataaatg cagaaaaaag 0 0 67.75 43.53 24.22 Both chr1 34 33514515 33514597 Tyr GTA ccccggggag cttgttgtag 0 0 53.60 33.17 20.43 Both chr1 35 33533015 33533087 Met CAT gtgataaatt ggtaggtaga 0 0 55.64 35.36 20.28 Both chr1 36 33556840 33556912 Thr TGT tgttatgtaa tttttctcta 0 0 67.46 44.88 22.58 Both chr1 37 33564348 33564418 Gly GCC ataggacgta agcttaattt 0 0 62.56 43.46 19.10 Both chr1 38 33582344 33582417 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr1 39 34935788 34935861 Ile AAT ttaacctggt cctttttctt 0 0 79.79 57.07 22.72 Both chr1 40 35478269 35478340 Gly TCC tgctatcaaa tgttttttaa 0 0 74.33 49.53 24.80 Both chr1 41 36009722 36009794 Arg CCG agccaacaac atttcccttg 0 0 74.73 50.27 24.46 Both chr1 42 36108470 36108542 Lys CTT taccaacaaa catttcattt 0 0 83.73 61.76 21.97 Both chr1 43 36265899 36266099 Ala GGC aaaaggcatc tgtttttttt 36265938 36266062 48.17 39.01 9.16 Eufind chr1 44 38728720 38728793 Val CAC tactcaacaa tttcaaatat 0 0 82.62 54.74 27.88 Both chr1 45 39240492 39240565 Ile AAT tgttcaacgt ccttttgctt 0 0 79.79 57.07 22.72 Both chr1 46 40640927 40640998 Lys TTT aacgtcgatg tttttttttt 0 0 86.68 59.76 26.92 Both chr1 47 40791198 40791278 Leu AAG agagcaaaaa tttattctta 0 0 69.68 40.32 29.36 Both chr1 48 42292759 42292831 Ala TGC tatcaaatca ttttcttcac 0 0 66.31 41.98 24.33 Both chr1 49 42617742 42617821 Leu TAG tcacaacgaa taatttttct 0 0 68.72 40.52 28.20 Both chr1 50 42726554 42726636 Leu TAA ctgtcgttta ctatttttga 0 0 68.63 37.73 30.90 Both chr1 51 43013082 43013155 Val AAC atctcaggtc atttttttta 0 0 76.95 55.01 21.94 Both chr1 52 43135865 43135938 Arg TCG aaagagaggc ttttcttttt 0 0 81.86 60.33 21.53 Both chr1 53 43191961 43192033 Lys CTT ttaccaaatt attatattat 0 0 83.73 61.76 21.97 Both chr1 54 43018072 43017999 Ile AAT cacacaacaa gttttatttt 0 0 79.79 57.07 22.72 Both chr1 55 43012283 43012195 Met CAT aatttgcagg ttcctttatt 43012245 43012233 40.88 29.34 11.54 Eufind chr1 56 42626930 42626859 Cys GCA gaaacatcaa cggatgaatt 0 0 77.23 51.84 25.39 Both chr1 57 42349580 42349508 Arg TCT agtcatataa ttttttattt 0 0 70.40 54.81 15.59 Both chr1 58 42310596 42310524 Phe GAA taatcactgt tttgaatttt 0 0 77.43 54.21 23.22 Both chr1 59 42051291 42051222 Lys CTT aattcaagct ttctcctttt 0 0 49.50 38.66 10.84 Both chr1 60 40786201 40786121 Leu AAG agggcaacca tttattcttt 0 0 69.68 40.32 29.36 Both chr1 61 40617274 40617202 Phe GAA attacatcaa aaattatttt 0 0 77.43 54.21 23.22 Both chr1 62 40079385 40079313 Ala AGC acgttcgttc ctataacctc 0 0 68.12 43.78 24.34 Both chr1 63 38488915 38488842 Ile TAT tagctgttgc ttttttattc 0 0 84.75 69.17 15.58 Both chr1 64 38423724 38423643 Ser AGA ctctatctta ttttttattt 0 0 84.20 51.76 32.44 Both chr1 65 38126640 38126567 Val AAC gtacaacatc atttgttttt 0 0 76.95 55.01 21.94 Both chr1 66 37686921 37686850 Gln TTG tgcaacaacc actttttttt 0 0 77.77 61.50 16.27 Both chr1 67 37308115 37308036 Leu TAG ttgcatcaac caatttattc 0 0 68.72 40.52 28.20 Both chr1 68 37298394 37298319 Ser AGA ggatcaagat gttctctttg 0 0 37.31 27.60 9.71 Eufind chr1 69 36421216 36421143 Val CAC aaacaaaaag cagttacaat 0 0 73.57 43.86 29.71 Both chr1 70 35794843 35794771 Glu CTC tcaaacaaga atttttaaat 0 0 79.07 55.53 23.54 Both chr1 71 35791783 35791711 Glu CTC agcagcaacc tttttttata 0 0 72.75 49.16 23.59 Both chr1 72 35257537 35257457 Leu AAG gtggtcactt tatatttttt 0 0 69.68 40.32 29.36 Both chr1 73 33582741 33582670 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr1 74 33564925 33564852 Met CAT agcgctccag ttagcagtct 0 0 61.45 34.79 26.66 Both chr1 75 33563607 33563520 Ser TGA attaggctgt tttgctttcc 0 0 54.93 31.13 23.80 Both chr1 76 33555206 33555134 Phe GAA acaagaaaag cagaaaaaag 0 0 67.75 43.53 24.22 Both chr1 77 33502947 33502876 Thr GGT tgaataagaa ttttttactt 0 0 52.61 21.28 31.33 Both chr1 78 33499209 33499137 Glu TTC gtctagtgat gggagtatta 0 0 50.26 28.60 21.66 tRNAscan chr1 79 33499075 33498992 Tyr GTA aattcttcct aaaatctagg 0 0 53.74 27.95 25.79 Both chr1 80 33498626 33498557 Asp GTC gccccgcggg atggaaccat 0 0 46.17 24.07 22.10 Eufind chr1 81 33146482 33146411 Asp GTC aagcatcgaa aaattgtttt 0 0 70.78 52.44 18.34 Both chr1 82 31976400 31976315 Tyr GTA tgtgcagaaa attatttttt 31976363 31976351 77.79 50.06 27.73 Both chr1 83 31101045 31100973 Phe GAA taccatgtta aatttaatct 0 0 65.45 53.19 12.26 Both chr1 84 30728530 30728459 Asp GTC gcgcaacaaa taataattta 0 0 70.78 52.44 18.34 Both chr1 85 29897154 29897084 Gly CCC taagcaacat ttctttcagt 0 0 61.52 34.10 27.42 Both chr1 86 29870875 29870805 Gly CCC ttaaatgtaa gtttttaaaa 0 0 69.01 36.42 32.59 Both chr1 87 28137859 28137788 Asp GTC aaacaaccaa aaatttttgc 0 0 70.78 52.44 18.34 Both chr1 88 27746959 27746888 Pseudo ??? ccaatatcct aattttccag 0 0 25.55 25.23 0.32 Eufind chr1 89 27742555 27742474 Ser CGA ctatcaagta tacttttttc 0 0 81.28 49.43 31.85 Both chr1 90 26034834 26034761 Ile AAT ttgatcagat tactttttcc 0 0 79.79 57.07 22.72 Both chr1 91 25326014 25325942 Arg CCT gcctaacaag ttgctctttt 0 0 72.16 52.89 19.27 Both chr1 92 25325584 25325514 Arg CCT catcggtcat ttgctctttt 0 0 44.11 37.74 6.37 Eufind chr1 93 18993853 18993780 Pro TGG aattttgaaa cctattactt 0 0 53.40 23.73 29.67 Both chr1 94 18993653 18993580 Trp CCA atttttgaaa attccatcta 0 0 66.22 37.50 28.72 Both chr1 95 14780307 14780227 Leu AAG agacacaaaa catgattctt 0 0 69.68 40.32 29.36 Both chr1 96 7812944 7812871 Ile TAT attcaaccag atttttgctg 0 0 85.40 69.82 15.58 Both chr1 97 7761128 7761055 Met CAT agcgctccag ttagcagtct 0 0 61.45 34.79 26.66 Both chr1 98 5004726 5004655 Gln TTG aaacccgaaa attttttctg 0 0 54.93 28.05 26.88 Both chr1 99 3515760 3515689 Cys GCA atgtcaaaat atatataagc 0 0 79.11 55.29 23.82 Both chr1 100 2390103 2390023 Leu CAG tatcgaaact agaaattttt 0 0 68.57 39.87 28.70 Both chr1 101 1864307 1864235 Phe GAA aacaacgtaa ttattctatt 0 0 77.43 54.21 23.22 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr2 1 780010 780081 Met CAT aaacaacaac attatttttt 0 0 68.81 41.37 27.44 Both chr2 2 816465 816538 Cys ACA gagacggggt cagccttcca 0 0 60.13 44.98 15.15 Eufind chr2 3 895879 895951 Ala CGC gatcagcatc cctcacttct 0 0 65.14 41.26 23.88 Both chr2 4 1025370 1025452 Tyr ATA aatccttcca aaaaatctag 1025408 1025418 26.14 17.09 9.05 Eufind chr2 5 1079703 1079784 Ser GCT tgacacaacc attaactttt 0 0 77.62 43.68 33.94 Both chr2 6 3623224 3623297 Asp GTC aggcatcaaa tttccatttt 0 0 57.97 47.78 10.19 Both chr2 7 5569897 5569977 Leu AAG gacaccaaaa ctcatttttt 0 0 61.77 33.40 28.37 Both chr2 8 5610556 5610626 Gly CCC aggcatgtaa ttagttctac 0 0 68.50 35.50 33.00 Both chr2 9 7621499 7621570 Gln CTG ctttcaccaa attttttctc 0 0 71.56 51.98 19.58 Both chr2 10 9399511 9399582 Lys TTT ccatacggtg ttgatttcat 0 0 86.68 59.76 26.92 Both chr2 11 14345189 14345260 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr2 12 14378212 14378282 Cys GCA cgtatttttt gatcaataaa 0 0 64.20 34.49 29.71 Both chr2 13 14383405 14383478 Met CAT agcgctccag ttagcagtct 0 0 61.45 34.79 26.66 Both chr2 14 14384727 14384814 Ser TGA attaggctgt tttgctttcc 0 0 54.93 31.13 23.80 Both chr2 15 14388403 14388490 Ser GCT tttggaacgg ccccctcgga 0 0 59.95 27.59 32.36 Both chr2 16 16173433 16173504 Pseudo ??? ccaagcgaaa aattttccag 0 0 21.34 25.62 -4.28 Eufind chr2 17 20789680 20789751 Gln TTG aatcagaaat tttttttctt 0 0 77.37 61.10 16.27 Both chr2 18 21021121 21021193 Phe GAA gtcacgcata atgtttttgg 0 0 77.43 54.21 23.22 Both chr2 19 21466944 21467016 Ala CGC ttcaatcgat tttttttccc 0 0 65.78 42.22 23.56 Both chr2 20 21537302 21537381 Ser AGA gtgaaactat cgcccttttt 0 0 29.76 12.65 17.11 Eufind chr2 21 22583580 22583653 Ile AAT ccatcaacaa gttttaaatt 0 0 79.79 57.07 22.72 Both chr2 22 25524815 25524887 Phe GAA taatatccaa tgttttcatt 0 0 77.43 54.21 23.22 Both chr2 23 25556995 25557067 Ala TGC aagttcaagt attcagtttt 0 0 66.31 41.98 24.33 Both chr2 24 25819241 25819312 Pro TGG tctcaacaaa cacttttttt 0 0 71.99 44.12 27.87 Both chr2 25 27261343 27261414 Thr CGT gttcatccca ttattcatat 0 0 82.82 60.66 22.16 Both chr2 26 29092663 29092750 Ser GCT tttggaacgg ccccctcaga 0 0 59.95 27.59 32.36 Both chr2 27 29688071 29688142 Gln CTG taagcaaaat tgatatattc 0 0 71.93 52.34 19.59 Both chr2 28 31334718 31334789 Met CAT caatcaccaa cttttccttt 0 0 68.81 41.37 27.44 Both chr2 29 31547836 31547907 Trp CCA taatcaccaa aatccccgat 0 0 77.63 55.47 22.16 Both chr2 30 31871514 31871599 Tyr GTA caaacggaaa tttttttaat 31871551 31871563 77.93 50.20 27.73 Both chr2 31 32712889 32712976 Ser GCT tttggaacgg ccccaccgcc 0 0 59.95 27.59 32.36 Both chr2 32 35431869 35431798 Cys GCA gaccatacaa tccctttttt 0 0 77.23 51.84 25.39 Both chr2 33 35289930 35289847 Leu CAA cgacaggacg ttatattttt 0 0 73.73 46.10 27.63 Both chr2 34 34855116 34855031 Met CAT cctaacacaa atttcttttt 34855078 34855067 62.06 41.95 20.11 Both chr2 35 33641512 33641440 Glu CTC agagcaagca tttttttgtt 0 0 79.07 55.53 23.54 Both chr2 36 32271036 32270964 Ala CGC taccatcgtt tcggcactgt 0 0 65.78 42.22 23.56 Both chr2 37 30309501 30309430 Met CAT tttcaacaac attgagggct 0 0 67.07 39.63 27.44 Both chr2 38 28256546 28256475 Met CAT taccaacaac atttagttga 0 0 68.81 41.37 27.44 Both chr2 39 26695392 26695320 Glu CTC atttactata agtacttttt 0 0 78.87 55.16 23.71 Both chr2 40 25601628 25601555 Thr AGT cacaactaga ttttgtttta 0 0 74.83 52.84 21.99 Both chr2 41 25529038 25528967 Thr TGT atcataagcg aattttacat 0 0 78.52 50.14 28.38 Both chr2 42 24737119 24737049 Gly GCC caagcacaca cgttttgttc 0 0 64.58 49.15 15.43 Eufind chr2 43 23735671 23735590 Ser AGA tgtcagcaag tttttttttc 0 0 84.20 51.76 32.44 Both chr2 44 22283388 22283317 Trp CCA ttcaatgacc aacccccgat 0 0 77.63 55.47 22.16 Both chr2 45 22182156 22182076 Leu CAG tttcaaagag aatattttgt 0 0 68.57 39.87 28.70 Both chr2 46 22096165 22096094 Trp CCA gagcacgacc aatccccgat 0 0 77.63 55.47 22.16 Both chr2 47 21184341 21184260 Ser AGA aacagcaagc tttttttgaa 0 0 84.20 51.76 32.44 Both chr2 48 21062465 21062393 Ala TGC aacaactaaa catatataat 0 0 66.31 41.98 24.33 Both chr2 49 19734344 19734265 Leu TAG aacacaacgc attctatttt 0 0 66.75 40.52 26.23 Both chr2 50 19659539 19659468 Cys GCA attcagcaaa tattgttatt 0 0 76.31 55.30 21.01 Both chr2 51 18975691 18975611 Leu AAG tgaccaagaa atatgttttt 0 0 69.68 40.32 29.36 Both chr2 52 15763233 15763163 Gly GCC catgcaataa tttgcttttt 0 0 71.56 51.49 20.07 Both chr2 53 15610096 15610025 His GTG tggcacaaat ctatcatttt 0 0 63.95 37.25 26.70 Both chr2 54 14383986 14383916 Gly GCC ataggacgta agcttaattt 0 0 57.80 43.56 14.24 Both chr2 55 14381258 14381187 Thr GGT tgaataagaa ttttttactt 0 0 60.49 29.15 31.34 Both chr2 56 14380668 14380596 Glu TTC gtctagtgat gggagtatta 0 0 50.26 28.60 21.66 tRNAscan chr2 57 14380534 14380451 Tyr GTA aattcttcct aaaatctagg 0 0 47.09 24.91 22.18 Eufind chr2 58 14380087 14380014 Asp GTC acgccccgcg aactagggtt 0 0 61.37 43.91 17.46 Both chr2 59 14355631 14355551 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr2 60 10270010 10269929 Ser CGA gtacacaatt tttttgcctc 0 0 83.56 51.20 32.36 Both chr2 61 9613056 9612985 Met CAT gagcataacg atatattttt 0 0 68.81 41.37 27.44 Both chr2 62 9597178 9597107 Met CAT gagttttcta attttttcca 0 0 68.81 41.37 27.44 Both chr2 63 8533326 8533255 Gln TTG tacaacatct cttttttggt 0 0 73.74 57.48 16.26 Both chr2 64 8531462 8531391 Gln TTG tacaacatct tttttggggt 0 0 70.42 53.08 17.34 Both chr2 65 8529307 8529236 Gln TTG tacaacatct cttttttggt 0 0 72.74 54.77 17.97 Both chr2 66 8527778 8527707 Gln TTG tacaacatcc tctttgtttt 0 0 72.74 54.77 17.97 Both chr2 67 8526352 8526281 Gln TTG tacaacacct cttttttggg 0 0 72.00 55.74 16.26 Both chr2 68 8525269 8525198 Gln TTG tataacatcc ctcttttttg 0 0 60.88 50.96 9.92 Both chr2 69 8523316 8523245 Gln TTG tacaatatcc tctttttttt 0 0 72.00 55.74 16.26 Both chr2 70 8519084 8519013 Gln TTG cacaacatcc tctttttttt 0 0 72.74 54.77 17.97 Both chr2 71 6154949 6154879 Gly GCC caacaataag ttttgttcct 0 0 71.56 51.49 20.07 Both chr2 72 5215283 5215211 Glu CTC ctgagcaaaa ttgtttttgt 0 0 79.07 55.53 23.54 Both chr2 73 4554973 4554892 Ser AGA caacatcaag attgtttctt 0 0 83.72 51.27 32.45 Both chr2 74 4371948 4371876 Glu CTC cagcttgtaa ttttttttct 0 0 79.07 55.53 23.54 Both chr2 75 1480637 1480556 Ser GCT attcaacaac ttcaattttt 0 0 77.62 43.68 33.94 Both chr2 76 816862 816791 Asn GTT tcccccctgt atttgattca 0 0 69.02 48.61 20.41 Both chr2 77 812530 812459 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both   chr3 1 2121173 2121243 Gly GCC cagcataagc attttcgttt 0 0 71.56 51.49 20.07 Both chr3 2 3106367 3106450 Leu CAA tagcacaaag atattttcga 0 0 73.73 46.10 27.63 Both chr3 3 4683421 4683505 Tyr GTA tcaacgcaaa ttttttattt 4683458 4683469 76.88 49.15 27.73 Both chr3 4 4749177 4749249 Arg ACG tcccatcagc ttcttctttt 0 0 73.66 52.08 21.58 Both chr3 5 6509137 6509206 Gly CCC caccaaagaa ttttttggtt 0 0 58.49 28.64 29.85 Both chr3 6 9573840 9573913 Arg TCG aagcaacaag ttaatttgtt 0 0 81.86 60.33 21.53 Both chr3 7 10180423 10180494 His GTG tttcaccaaa ctataaaaaa 0 0 63.70 36.75 26.95 Both chr3 8 10361422 10361492 Gly GCC aagaacaaaa tattaatttt 0 0 71.56 51.49 20.07 Both chr3 9 11451585 11451657 Ala CGC actgcaccaa ttttcttcaa 0 0 65.14 41.26 23.88 Both chr3 10 12536307 12536377 Gly CCC caagcgtcaa tcaattttgc 0 0 69.01 36.42 32.59 Both chr3 11 12601692 12601773 Ser TGA aatacaagtt ttgttttttc 0 0 70.09 37.66 32.43 tRNAscan chr3 12 12793427 12793499 Ala AGC aaaattagta aatgacacga 0 0 64.49 40.16 24.33 Both chr3 13 12974300 12974371 Met CAT ccacaacaac cacgattttt 0 0 68.81 41.37 27.44 Both chr3 14 12995017 12995090 Asn GTT aggacaggta atattttttt 0 0 77.19 51.04 26.15 Both chr3 15 13866850 13866921 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr3 16 14775137 14775217 Leu CAG gctagtaaga atttattttt 0 0 68.57 39.87 28.70 Both chr3 17 15034232 15034303 Trp CCA gaacacaaac ataccccgat 0 0 77.63 55.47 22.16 Both chr3 18 16684864 16684936 Lys CTT aaatcaacaa ccttcttttt 0 0 83.73 61.76 21.97 Both chr3 19 17010447 17010518 Asp GTC aggcaagcaa tttccagttt 0 0 70.78 52.44 18.34 Both chr3 20 22181197 22181268 Asp GTC taacaacaaa atttcttttt 0 0 70.78 52.44 18.34 Both chr3 21 22409539 22409611 Arg ACG agcagaacat cccatgtaag 0 0 73.66 52.08 21.58 Both chr3 22 23353200 23353285 Tyr GTA tgatcattat ttaatttttt 23353237 23353249 77.29 49.56 27.73 Both chr3 23 25159558 25159629 Pseudo ??? agatgtgaaa aattttccag 0 0 28.88 32.31 -3.43 Eufind chr3 24 25423991 25424061 Gly GCC tgacatcaaa cgtttttcct 0 0 71.56 51.49 20.07 Both chr3 25 26255108 26255180 Arg CCG cgaagcacac ggttggtttt 0 0 58.97 51.99 6.98 Eufind chr3 26 26259094 26259165 Gln CTG ggaacaaata taattttctc 0 0 71.56 51.98 19.58 Both chr3 27 27640604 27640672 Pseudo CGA cacgtgagaa agctggtcgc 0 0 21.13 23.05 -1.92 Eufind chr3 28 29734211 29734284 Val CAC cgaacaaatt tatatttgat 0 0 82.62 54.74 27.88 Both chr3 29 30993361 30993433 Arg ACG ctaataaaat tttttagttt 0 0 74.06 52.84 21.22 Both chr3 30 31603130 31603203 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr3 31 31606106 31606178 Met CAT gtgataaatt ggtaggtaga 0 0 55.64 35.36 20.28 Both chr3 32 31830169 31830240 Gln CTG tgttcaaaat ctttttttct 0 0 66.11 53.46 12.65 Both chr3 33 32576001 32576072 Cys GCA tcacaacaaa tatttattta 0 0 79.11 55.29 23.82 Both chr3 34 32755807 32755877 Gly GCC tatcaacaag aatattttga 0 0 71.56 51.49 20.07 Both chr3 35 33702939 33703029 Met CAT agcacacaaa ccaatttgga 33702977 33702993 61.77 41.66 20.11 Both chr3 36 33963425 33963508 Leu CAA tatcaacgtg taattttgtc 0 0 73.73 46.10 27.63 Both chr3 37 34845459 34845531 Glu CTC cccatcagaa ttttttttgt 0 0 79.47 55.93 23.54 Both chr3 38 35786342 35786262 Leu CAA ctttcaagat taatacggag 0 0 48.42 26.22 22.20 Both chr3 39 35390470 35390399 Val GAC ataaaaggga aacccaatgt 0 0 46.97 15.32 31.65 Eufind chr3 40 35214771 35214690 Ser AGA caaccccaag tttttttgaa 0 0 84.20 51.76 32.44 Both chr3 41 35146832 35146751 Ser CGA agcacgatag cttttttttt 0 0 81.28 49.43 31.85 Both chr3 42 35121050 35120977 Val AAC acaacaaaaa tcataatttt 0 0 76.93 54.36 22.57 Both chr3 43 35005024 35004953 Gln TTG gaagtaaaat ttttttttag 0 0 77.37 61.10 16.27 Both chr3 44 34447543 34447473 Pseudo CGC tgaatgaaat cttaccaggg 0 0 28.03 37.07 -9.04 Eufind chr3 45 34275840 34275753 Ser TGA attaggctgt tttgctttcc 0 0 54.93 31.13 23.80 Both chr3 46 34169069 34168997 Glu CTC gctagcaaaa gttttttttc 0 0 71.20 47.65 23.55 Both chr3 47 32227026 32226953 Val AAC cgagcatcat atttttttaa 0 0 76.95 55.01 21.94 Both chr3 48 32226091 32226018 Val AAC gctgcaactt aatcttttta 0 0 64.75 47.76 16.99 Both chr3 49 32225127 32225054 Val AAC ccagcagctt attttttttc 0 0 75.06 54.59 20.47 Both chr3 50 32197097 32197025 Ala AGC tgctcatcac attcctgttt 0 0 68.12 43.78 24.34 Both chr3 51 31878705 31878632 Thr AGT gcaacaaaga atttctctct 0 0 76.42 49.45 26.97 Both chr3 52 31637151 31637078 Glu TTC ccaacacaga caattttttt 0 0 65.35 41.10 24.25 Both chr3 53 31603527 31603456 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr3 54 29223915 29223843 Arg CCT atcattgaga gcatttttta 0 0 76.04 51.78 24.26 Both chr3 55 27412928 27412856 Arg TCT tatgaaaaaa atcttatttc 0 0 48.65 22.03 26.62 Eufind chr3 56 26326365 26326291 Thr GGT ttaaagaaaa taatttattt 0 0 58.82 35.00 23.82 Eufind chr3 57 26256861 26256789 Arg CCT acagcactaa aattttttgg 0 0 72.16 52.89 19.27 Both chr3 58 25052398 25052319 Leu TAG tttcaactta gtctcgaaaa 0 0 57.27 24.47 32.80 Both chr3 59 22622963 22622892 Pro CGG agttcaggtt gtgtaagctg 0 0 71.75 41.86 29.89 Both chr3 60 15420723 15420637 Met CAT caaacacatc atttttttgt 15420685 15420673 60.84 40.73 20.11 Both chr3 61 15040376 15040304 Trp CCA gaacacggcc ataccccgat 0 0 56.40 37.98 18.42 Eufind chr3 62 14704694 14704621 Ile AAT tgcacagcaa cttttttttg 0 0 79.79 57.07 22.72 Both chr3 63 14170171 14170099 Ala AGC gaacgttgcg ttcatttctt 0 0 68.12 43.78 24.34 Both chr3 64 13867247 13867174 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr3 65 13156295 13156224 Pro TGG tatcacacaa cggctatctt 0 0 73.73 45.85 27.88 Both chr3 66 11519604 11519532 Glu CTC cgctcaagca tctttttgtt 0 0 79.07 55.53 23.54 Both chr3 67 11205398 11205327 Gly TCC aatcaaaatt tgtttctcta 0 0 74.33 49.53 24.80 Both chr3 68 10722390 10722318 Ala AGC ttagacaaaa attttccgtt 0 0 68.12 43.78 24.34 Both chr3 69 10437104 10437024 Leu AAG atgcaaacag aatttatacg 0 0 69.68 40.32 29.36 Both chr3 70 10336154 10336083 Met CAT ggacaaaacc aaatttgttg 0 0 68.81 41.37 27.44 Both chr3 71 6852815 6852742 Thr AGT aggaccaaca attcatttca 0 0 76.42 49.45 26.97 Both chr3 72 6750083 6750011 Arg CCT caaacactga tattgtttcg 0 0 76.26 56.99 19.27 Both chr3 73 6651560 6651487 Glu TTC atgtcacttg ttttttttct 0 0 65.74 41.84 23.90 Both chr3 74 6253077 6253006 Thr TGT tgtagcagtg tttttacctt 0 0 78.52 50.14 28.38 Both chr3 75 5458285 5458214 Met CAT aaacaacacc attaattttt 0 0 68.81 41.37 27.44 Both chr3 76 4748280 4748209 Asp GTC ggcacataat atttttattt 0 0 70.78 52.44 18.34 Both chr3 77 2589478 2589408 Gly GCC caacaagcaa tttcattttt 0 0 71.56 51.49 20.07 Both chr3 78 1547214 1547141 Asn GTT cagtgcaaaa atttttttta 0 0 78.06 52.47 25.59 Both chr3 79 1424008 1423937 His GTG gtttaataaa cttataaatt 0 0 63.70 36.75 26.95 Both chr3 80 603061 602990 Thr TGT aagtagaaat accttttgat 0 0 82.64 57.48 25.16 Both chr3 81 505783 505710 Asn GTT gtaaccataa tgtttttaga 0 0 81.83 55.73 26.10 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr4 1 5174418 5174505 Ser TGA ccaattatgt tttgatttcc 5174456 5174467 34.38 17.26 17.12 Eufind chr4 2 8172760 8172831 Asp GTC cctcaagcat tttctttttc 0 0 70.78 52.44 18.34 Both chr4 3 9051845 9051916 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr4 4 9059745 9059818 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr4 5 9071285 9071371 Ser GGA agattatgga tttttcttaa 0 0 55.11 27.45 27.66 Both chr4 6 9091781 9091867 Ser GGA agattatgga tttttcttaa 0 0 55.11 27.45 27.66 Both chr4 7 9095646 9095719 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr4 8 9107923 9108003 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr4 9 9109502 9109575 Met CAT tccctgttaa cgcgaaccgg 0 0 63.87 42.54 21.33 Both chr4 10 9128148 9128219 Val GAC gggacgggga aacccaatgt 0 0 45.41 16.18 29.23 Both chr4 11 9137659 9137729 Gly GCC ataggacgta agcttaattt 0 0 62.56 43.46 19.10 Both chr4 12 9140383 9140454 Thr GGT tgaataagaa ttttttactt 0 0 60.49 29.15 31.34 Both chr4 13 9140973 9141045 Glu TTC gtctagtgat gggagtatta 0 0 50.26 28.60 21.66 tRNAscan chr4 14 9141107 9141190 Tyr GTA aattcttcct aaaatctagg 0 0 45.94 20.15 25.79 Both chr4 15 9141558 9141631 Asp GTC acgccccgcg aactagggtt 0 0 61.37 43.91 17.46 Both chr4 16 9160023 9160094 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr4 17 9167919 9167992 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr4 18 9205101 9205172 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr4 19 9213488 9213561 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr4 20 9223429 9223500 Val GAC gggacgggga aacccaatgt 0 0 45.41 16.18 29.23 Both chr4 21 9231331 9231404 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr4 22 9241564 9241634 Gly GCC ataggacgta agcttaattt 0 0 62.56 43.46 19.10 Both chr4 23 9244288 9244359 Thr GGT tgaataagaa ttttttactt 0 0 60.49 29.15 31.34 Both chr4 24 9244878 9244950 Glu TTC gtctagtgat gggagtatta 0 0 50.26 28.60 21.66 tRNAscan chr4 25 9245012 9245095 Tyr GTA aattcttcct aaaatctagg 0 0 45.94 20.15 25.79 Both chr4 26 9245463 9245536 Asp GTC acgccccgcg aactagggtt 0 0 61.37 43.91 17.46 Both chr4 27 9263929 9264000 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr4 28 9271831 9271904 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr4 29 11103928 11103998 Cys GCA cgtatttttt gatcaataaa 0 0 51.78 31.68 20.10 Eufind chr4 30 11791537 11791610 Val AAC gcaaccaaaa ttaacttcac 0 0 76.93 54.36 22.57 Both chr4 31 18509664 18509736 Ala AGC actgtgacgt tttttttatt 0 0 68.12 43.78 24.34 Both chr4 32 19258157 19258228 Gly TCC aaaacaaaaa tctttttttc 0 0 75.78 52.05 23.73 Both chr4 33 19720275 19720355 Leu AAG gttcaagcaa catattttat 0 0 69.68 40.32 29.36 Both chr4 34 21598410 21598481 Met CAT gtacaacaac attgatcttt 0 0 58.85 39.29 19.56 Eufind chr4 35 21756152 21756224 Phe GAA attgaacaga attttcattt 0 0 77.43 54.21 23.22 Both chr4 36 22085298 22085370 Lys TTT attcgtgcca ttcaatttga 0 0 87.41 62.85 24.56 Both chr4 37 22185593 22185665 Ala CGC tgagaacaac ttctcgtttt 0 0 65.78 42.22 23.56 Both chr4 38 22769548 22769620 Arg ACG atccaacaag atttactttc 0 0 73.66 52.08 21.58 Both chr4 39 23441197 23441270 Ile AAT caaataaatt ttattttttt 0 0 79.79 57.07 22.72 Both chr4 40 23615525 23615596 Asn GTT tcccccttat atttgattca 0 0 72.09 56.87 15.22 Both chr4 41 23629890 23629963 His GTG tggataaggg catcccatta 0 0 41.85 31.50 10.35 Both chr4 42 25731246 25731319 Ile AAT aaaaagaatt ttatttgttt 0 0 67.62 55.06 12.56 Both chr4 43 25806229 25806301 Arg CCG ttgaacgtat atttttttac 0 0 71.41 55.78 15.63 Both chr4 44 26285866 26285938 Phe GAA gatggtaaaa tttcgtctgc 0 0 74.98 51.76 23.22 Both chr4 45 26329877 26329949 Ala TGC aatacagcaa ttttaatttt 0 0 66.31 41.98 24.33 Both chr4 46 26988242 26988313 Pro CGG taatcaaact ctcgatcagt 0 0 74.11 46.34 27.77 Both chr4 47 27829803 27829874 Cys GCA cagcatcatt atttaacaat 0 0 78.18 58.76 19.42 Both chr4 48 28276571 28276642 Thr CGT tgtatcagtt cttacgaatt 0 0 82.82 60.66 22.16 Both chr4 49 29933505 29933591 Met CAT aaacaccaac tgttttttat 29933543 29933555 60.84 40.73 20.11 Both chr4 50 31476629 31476702 Val AAC gtaacacaaa tttttctctt 0 0 76.67 54.09 22.58 Both chr4 51 35371317 35371246 Gln TTG gaacaagatc tttttttcac 0 0 77.77 61.50 16.27 Both chr4 52 35121903 35121818 Tyr GTA ttttcagaaa tagttttttt 35121866 35121854 77.79 50.06 27.73 Both chr4 53 34269693 34269621 Ala CGC ccgtcacaac atcttttgat 0 0 58.49 38.14 20.35 Both chr4 54 33864127 33864048 Pseudo ??? gccagcctaa ttgccctttg 0 0 25.97 4.66 21.31 Eufind chr4 55 32913509 32913423 Ser TGA gcgagcgcag cgaggtcata 0 0 53.41 23.45 29.96 Both chr4 56 32780996 32780923 Glu TTC gtatcacatt tcattttttt 0 0 65.74 41.84 23.90 Both chr4 57 32447559 32447488 Trp CCA tatcaccatt atatcccgat 0 0 77.63 55.47 22.16 Both chr4 58 31443862 31443778 Tyr GTA actacggaga tttcttttca 31443825 31443814 77.52 49.79 27.73 Both chr4 59 31432380 31432308 Arg CCG tatacgaagt tttttttctc 0 0 69.43 54.73 14.70 Both chr4 60 31018346 31018274 Ala CGC aaatcaaaac atataaaacg 0 0 65.14 41.26 23.88 Both chr4 61 28676824 28676752 Val TAC aaacaagtcg tccacttctt 0 0 76.67 46.07 30.60 Both chr4 62 27645089 27645017 Glu CTC gacggataaa attttggatt 0 0 73.37 54.30 19.07 Both chr4 63 25546580 25546510 Gly GCC gacatcaagc ttttttttct 0 0 71.56 51.49 20.07 Both chr4 64 25527758 25527685 Ile AAT tcctcaactc ttatttattt 0 0 79.79 57.07 22.72 Both chr4 65 25034963 25034890 Ile AAT ttatcgaatt taattttttg 0 0 79.79 57.07 22.72 Both chr4 66 24816150 24816077 Val CAC tgccacaaaa tgctttctat 0 0 82.62 54.74 27.88 Both chr4 67 24446519 24446437 Leu TAA taacgtatca atatttaatt 0 0 70.42 37.83 32.59 Both chr4 68 23632050 23631977 Met CAT tccctgttaa cgcgaaccgg 0 0 63.87 42.54 21.33 Both chr4 69 22976471 22976400 Trp CCA tagtaccaca ataatacccc 0 0 77.63 55.47 22.16 Both chr4 70 22839121 22839050 Trp CCA atgtcaagcc ataccccgaa 0 0 72.73 54.58 18.15 Both chr4 71 22093732 22093651 Ser AGA aaacatagcg gttttttatt 0 0 71.78 45.69 26.09 Eufind chr4 72 20446012 20445933 Leu TAG atgcagctgc aattttttgt 0 0 70.72 42.62 28.10 Both chr4 73 20399448 20399377 Cys GCA tttgtgagtt tattaactaa 0 0 76.31 55.30 21.01 Both chr4 74 16541147 16541076 Pseudo ??? aatcacacaa tttttcttct 0 0 28.69 25.73 2.96 Eufind chr4 75 12377821 12377750 His GTG caacaccaat tatttttttt 0 0 63.70 36.75 26.95 Both chr4 76 11104647 11104576 Thr GGT tgaataagaa ttttttactt 0 0 60.49 29.15 31.34 Both chr4 77 9272228 9272157 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr4 78 9247382 9247312 Cys GCA cgtatttttt gatcaataaa 0 0 64.20 34.49 29.71 Both chr4 79 9242141 9242068 Met CAT agcgctccag ttagcagtct 0 0 61.45 34.79 26.66 Both chr4 80 9240818 9240731 Ser TGA attaggctgt tttgctttcc 0 0 54.93 31.13 23.80 Both chr4 81 9217228 9217148 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr4 82 9215649 9215576 Met CAT tccctgttaa cgcgaaccgg 0 0 58.29 43.94 14.35 Both chr4 83 9210259 9210172 Ser GCT tttggaacgg ccccctcgga 0 0 59.95 27.59 32.36 Both chr4 84 9209030 9208959 Gln TTG aaacccgaaa attttttatg 0 0 61.03 34.16 26.87 Both chr4 85 9188616 9188543 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr4 86 9143477 9143407 Cys GCA cgtatttttt gatcaataaa 0 0 64.20 34.49 29.71 Both chr4 87 9138236 9138163 Met CAT agcgctccag ttagcagtct 0 0 61.45 34.79 26.66 Both chr4 88 9136913 9136826 Ser TGA attaggctgt tttgctttcc 0 0 54.93 31.13 23.80 Both chr4 89 9133306 9133219 Ser GCT tttggaacgg ccccctcgga 0 0 59.95 27.59 32.36 Both chr4 90 9132077 9132006 Gln TTG aaacccgaaa attttttatg 0 0 61.03 34.16 26.87 Both chr4 91 9111663 9111590 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr4 92 9101722 9101651 Val GAC gggacgggga aacccaatgt 0 0 45.41 16.18 29.23 Both chr4 93 9099376 9099296 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr4 94 9097807 9097734 Met CAT tccctgttaa cgcgaaccgg 0 0 58.29 43.94 14.35 Both chr4 95 9093131 9093059 Thr TGT tgttatgtaa tttttctcta 0 0 67.46 44.88 22.58 Both chr4 96 9083502 9083435 Pseudo CAT tagtttaaca ctccatattc 0 0 23.75 8.37 15.38 Eufind chr4 97 9083296 9083225 Arg TCT tatgaaaaaa atcttatttc 0 0 62.51 33.29 29.22 Eufind chr4 98 9072634 9072562 Thr TGT tgttatgtaa tttttctcta 0 0 67.46 44.88 22.58 Both chr4 99 9060142 9060071 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr4 100 7229675 7229604 Pseudo ??? cattgcgaaa acttttccag 0 0 20.21 26.51 -6.30 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr5 1 388497 388568 Cys GCA aacagcaatt tatatagttg 0 0 77.23 51.84 25.39 Both chr5 2 389520 389599 Leu TAG agccagcaaa ttttttttcc 0 0 68.72 40.52 28.20 Both chr5 3 890518 890591 Arg TCG atgatgtgaa tcttcttctt 0 0 78.23 56.71 21.52 Both chr5 4 3591619 3591692 Arg TCG gcacgtcaaa aatgttttct 0 0 81.86 60.33 21.53 Both chr5 5 3811577 3811658 Ser TGA agcatcaagg tttctttttt 0 0 80.82 48.39 32.43 Both chr5 6 4203268 4203339 Pro AGG taacagcagc attttttttc 0 0 71.75 43.88 27.87 Both chr5 7 8472053 8472124 Gln CTG agtcacaggt gtttttgcaa 0 0 71.08 51.14 19.94 Both chr5 8 12851440 12851520 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr5 9 18354208 18354278 Arg CCT tccaatgaca ttgttttcaa 0 0 59.23 45.66 13.57 Both chr5 10 20448943 20449016 Ile TAT caaacagatc atttttgcaa 0 0 85.40 69.82 15.58 Both chr5 11 20488755 20488836 Ser AGA aacaatctca ctcagttttt 0 0 84.20 51.76 32.44 Both chr5 12 21545705 21545784 Leu TAG ttaatcaagt atttcttttt 0 0 68.72 40.52 28.20 Both chr5 13 22477734 22477807 Val AAC tgccacaaac tcttttttaa 0 0 76.67 54.09 22.58 Both chr5 14 24061011 24061081 Gly GCC actcaagaac atttttattt 0 0 71.56 51.49 20.07 Both chr5 15 24578612 24578683 Asp GTC aagcaccgaa acaaatttta 0 0 70.78 52.44 18.34 Both chr5 16 24582262 24582333 Asp GTC aagcatccaa atgacaattt 0 0 63.35 48.61 14.74 Both chr5 17 24583656 24583727 Asp GTC aagcaccgaa attacatact 0 0 70.78 52.44 18.34 Both chr5 18 25118733 25118804 Asp GTC acaccagcaa aactgttttt 0 0 70.78 52.44 18.34 Both chr5 19 25120746 25120817 Asp GTC aagcacctaa aactcttttt 0 0 70.78 52.44 18.34 Both chr5 20 25146275 25146363 Met CAT tcagcacaac caaaatttgg 25146313 25146327 61.87 41.76 20.11 Both chr5 21 25435023 25435095 Ala AGC atagcaggct aatatatttg 0 0 68.12 43.78 24.34 Both chr5 22 25717207 25717279 Phe GAA ttaaccaagg ttttcctttt 0 0 77.43 54.21 23.22 Both chr5 23 25976768 25976839 Asp GTC gaatatcgaa aatttttttt 0 0 58.65 50.19 8.46 Both chr5 24 26427759 26427846 Met CAT caacaaaaac aatattgagt 26427797 26427810 61.60 41.49 20.11 Both chr5 25 27363570 27363641 Asp GTC ttccaaccaa taatcctttt 0 0 70.78 52.44 18.34 Both chr5 26 27645173 27645254 Ser CGA aaacgcgatg cctttttttt 0 0 81.28 49.43 31.85 Both chr5 27 28707957 28708029 Arg CCT gttgtataag tgttttttga 0 0 72.16 52.89 19.27 Both chr5 28 29125451 29125524 Val AAC agacaaaatt tttttttaat 0 0 76.93 54.36 22.57 Both chr5 29 29323444 29323374 Gly GCC gacatgaatg ttttttcttt 0 0 71.56 51.49 20.07 Both chr5 30 29120829 29120757 Val TAC agacagcttg tatgttttgt 0 0 76.67 46.07 30.60 Both chr5 31 27908014 27907942 Arg ACG atacaacagg aatcattccc 0 0 59.78 41.14 18.64 Both chr5 32 27385591 27385519 Glu CTC tactcaataa tctttttttc 0 0 79.07 55.53 23.54 Both chr5 33 26229175 26229103 Val TAC aacattaaaa gtttttttat 0 0 76.67 46.07 30.60 Both chr5 34 26206468 26206396 Lys CTT attgaacaaa tacattcctt 0 0 83.73 61.76 21.97 Both chr5 35 25715543 25715471 Lys CTT cgaacaccaa tccattcctt 0 0 83.73 61.76 21.97 Both chr5 36 25386898 25386826 Arg ACG atttcataag tttcttaaaa 0 0 74.06 52.84 21.22 Both chr5 37 23456080 23456007 Ile AAT aaaagaacaa atttatcttt 0 0 79.79 57.07 22.72 Both chr5 38 22997781 22997710 Gly TCC ggccgtacaa tttcttttgc 0 0 75.58 51.57 24.01 Both chr5 39 22711668 22711596 Glu CTC aaaacattat ttttttttgt 0 0 72.40 55.01 17.39 Both chr5 40 22476037 22475965 Arg CCG cacgagacag aaccctgttc 0 0 77.88 56.59 21.29 Both chr5 41 22433048 22432976 Lys TTT atgccaggtt attcttttgt 0 0 77.07 60.41 16.66 Both chr5 42 22341925 22341845 Leu CAG cctgatgtgg tttaattttt 0 0 68.57 39.87 28.70 Both chr5 43 20782167 20782086 Ser CGA tagcgaagac cttccatttt 0 0 81.28 49.43 31.85 Both chr5 44 20608900 20608828 Arg ACG tagcatcaac aaatagcata 0 0 74.06 52.84 21.22 Both chr5 45 20247410 20247324 Pseudo CAC tagtaaacta ttcagttcat 0 0 31.77 4.92 26.85 Eufind chr5 46 19330275 19330203 Glu CTC cattacaaca ttttggttta 0 0 79.07 55.53 23.54 Both chr5 47 17735589 17735516 Asn GTT ttatcacaca tttatattcc 0 0 79.46 55.04 24.42 Both chr5 48 17731588 17731515 Asn GTT tttgctgtta attttatttt 0 0 82.24 56.49 25.75 Both chr5 49 17552938 17552866 Glu CTC cagcacaaca ttttttttct 0 0 79.07 55.53 23.54 Both chr5 50 16212799 16212727 Lys CTT taatatgcaa ctattatttt 0 0 83.73 61.76 21.97 Both chr5 51 14064474 14064390 Tyr GTA caacatgaaa tttagcaggt 14064437 14064426 76.75 49.02 27.73 Both chr5 52 13328295 13328224 His GTG aacaaaccag acgaccggcg 0 0 51.03 32.60 18.43 Eufind chr5 53 12845162 12845075 Ser TGA attaggctgt tttgctttcc 0 0 54.93 31.13 23.80 Both chr5 54 12841641 12841570 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr5 55 4826283 4826213 Gly GCC acaacaagaa ttacctcatt 0 0 71.56 51.49 20.07 Both chr5 56 3239951 3239878 Asn GTT ctaatcagta ttattttttt 0 0 81.83 55.73 26.10 Both chr5 57 3197085 3197012 Thr AGT cggtcggtta atatcttttt 0 0 76.90 50.29 26.61 Both chr5 58 2515480 2515407 Asn GTT ccaacaaaga catttatttg 0 0 82.24 56.49 25.75 Both chr5 59 885442 885371 Pseudo GAC gggacgggga aacccaatgt 0 0 43.77 9.19 34.58 Eufind   chr6 1 147701 147773 Ala CGC tttaacaaga tttgtttctg 0 0 45.75 32.90 12.85 Eufind chr6 2 701341 701412 Asp GTC cagcaacaaa atttcactat 0 0 70.78 52.44 18.34 Both chr6 3 1094288 1094360 Met CAT gtgataaatt ggtaggtaga 0 0 53.55 33.28 20.27 Both chr6 4 2364628 2364698 Gly GCC tttgcacgag gttcctgttt 0 0 71.56 51.49 20.07 Both chr6 5 3144011 3144082 Pro TGG tatcatccga tattttactt 0 0 74.23 46.82 27.41 Both chr6 6 5960042 5960115 Val AAC tttccgttaa gattatcgtt 0 0 76.67 54.09 22.58 Both chr6 7 9354537 9354608 Met CAT catcacagcc tttttatttt 0 0 68.81 41.37 27.44 Both chr6 8 23194805 23194878 Pro TGG aatttggaaa cctattactt 0 0 57.09 25.04 32.05 Both chr6 9 23195005 23195078 Trp CCA atttttgaaa attccatcta 0 0 67.94 39.21 28.73 Both chr6 10 24682068 24682148 Leu CAG ttggcacgaa atattttttt 0 0 68.57 39.87 28.70 Both chr6 11 24793235 24793315 Leu CAG cgagtaagat aaaaaaattt 0 0 68.57 39.87 28.70 Both chr6 12 26120323 26120404 Ser AGA gcatcggcag gtttttttat 0 0 83.72 51.27 32.45 Both chr6 13 26326957 26327029 Glu CTC tctaacaaaa ttttttattt 0 0 74.98 56.03 18.95 Both chr6 14 27796714 27796793 Leu TAG tttcaactta gtctcgaaaa 0 0 57.27 24.47 32.80 Both chr6 15 29157937 29158008 His GTG gtaacacgaa ctattttttt 0 0 63.70 36.75 26.95 Both chr6 16 30005483 30005555 Ala AGC tacatcaact tttctcaatt 0 0 68.12 43.78 24.34 Both chr6 17 30483339 30483410 Thr CGT aaacaagttg tttattttgt 0 0 84.43 63.80 20.63 Both chr6 18 30577523 30577595 Ala AGC tctatcaaat cttaattttc 0 0 58.03 39.40 18.63 Both chr6 19 30687991 30687920 Pro TGG aatcagaaat tattgcataa 0 0 74.34 46.93 27.41 Both chr6 20 23814466 23814386 Leu AAG tggccatcca tataaatggt 0 0 69.68 40.32 29.36 Both chr6 21 23571445 23571362 Leu CAA ctacataacg ttttgttttt 0 0 73.73 46.10 27.63 Both chr6 22 23478528 23478457 Pro AGG aacgtccgaa ttttaatttt 0 0 71.75 43.88 27.87 Both chr6 23 23207882 23207810 Met CAT gtgataaatt ggtaggtaga 0 0 55.64 35.36 20.28 Both chr6 24 22800776 22800706 Gly GCC tctaaacaac aattcatttt 0 0 71.56 51.49 20.07 Both chr6 25 20560122 20560051 Gln CTG cggtatgaaa taattttttt 0 0 71.31 51.51 19.80 Both chr6 26 17769317 17769246 Lys TTT aataaacaga attcagaatt 0 0 86.68 59.76 26.92 Both chr6 27 15483121 15483050 Pseudo ??? ggccgcgaaa aattttccag 0 0 21.41 24.22 -2.81 Eufind chr6 28 13170209 13170128 Ser CGA tgttgaagtc ctttttaact 0 0 80.29 48.52 31.77 Both chr6 29 12517638 12517567 Gln CTG taacatatac ttattcttcg 0 0 71.93 52.34 19.59 Both chr6 30 12352556 12352485 Gln TTG accgaccgtt agcatactta 0 0 46.05 19.61 26.44 Both chr6 31 7012658 7012579 Phe GAA ctttcaagat taatacggag 0 0 53.37 29.01 24.36 Both chr6 32 6461311 6461240 Trp CCA tgaacaagtg aaaccccggt 0 0 70.65 54.15 16.50 Both chr6 33 5439967 5439886 Ser GCT tagcacagac tgaatttttg 0 0 77.62 43.68 33.94 Both chr6 34 4621766 4621694 Lys TTT cgtcataata ttggacattt 0 0 88.46 62.23 26.23 Both chr6 35 3350240 3350168 Ala AGC gaaccaactc ttcgctctat 0 0 68.12 43.78 24.34 Both chr6 36 2763186 2763115 Pseudo ??? tatagcgaaa aattttccag 0 0 23.09 30.23 -7.14 Eufind chr6 37 2034206 2034134 Ala AGC aagcatgaac cctgttgttg 0 0 68.12 43.78 24.34 Both chr6 38 817775 817704 Asp GTC atcaagcaag attttactcc 0 0 70.78 52.44 18.34 Both chr6 39 166312 166231 Ser GCT acacatcacc attatttttt 0 0 77.62 43.68 33.94 Both chr6 40 147986 147915 Thr CGT ggcaacaacc cctatttctt 0 0 82.82 60.66 22.16 Both   chr7 1 501656 501727 Asp GTC agcaagcaag ttcttttttt 0 0 68.12 49.77 18.35 Both chr7 2 1219492 1219565 Glu TTC tcttcaaaaa acttttttct 0 0 59.63 39.31 20.32 Both chr7 3 1838994 1839067 Thr AGT tcaccagtta tttttttttc 0 0 76.42 49.45 26.97 Both chr7 4 2243528 2243617 Met CAT aaacacaaat aatttttttc 2243566 2243581 61.21 41.10 20.11 Both chr7 5 3300320 3300391 Cys GCA caacacaaaa tgctattttt 0 0 76.44 52.63 23.81 Both chr7 6 3402352 3402423 Gly TCC tgaataaaag tttttgtaat 0 0 74.33 49.53 24.80 Both chr7 7 3692188 3692258 Gly GCC actcaagaac atttttattt 0 0 71.56 51.49 20.07 Both chr7 8 3697977 3698047 Gly GCC aagcagcaag atgatttgtt 0 0 63.64 43.57 20.07 Both chr7 9 4021498 4021570 Phe GAA caatcacctt actttttgtt 0 0 77.43 54.21 23.22 Both chr7 10 7012391 7012474 Leu CAA attacatcaa taattttcac 0 0 73.73 46.10 27.63 Both chr7 11 8313916 8313994 Glu CTC tgatcaatat attttttttg 0 0 51.65 32.14 19.51 Eufind chr7 12 13264744 13264825 Ser GCT acacaaattc ttttatactt 0 0 77.62 43.68 33.94 Both chr7 13 14186969 14187049 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr7 14 14188548 14188621 Met CAT tccctgttaa cgcgaaccgg 0 0 58.29 43.94 14.35 Both chr7 15 15425356 15425427 Pseudo ??? gttggtgaaa aattttccag 0 0 25.66 32.79 -7.13 Eufind chr7 16 15508895 15508968 Asp GTC acgccccgcg aactaggtca 0 0 56.43 38.97 17.46 Both chr7 17 19228687 19228761 Arg ACG gatttccggc cagacttcca 0 0 54.01 38.85 15.16 Eufind chr7 18 19236539 19236610 His GTG tctcaacaaa tttataaatt 0 0 63.70 36.75 26.95 Both chr7 19 25169608 25169689 Ser GCT attcacaagc ttaatttttg 0 0 77.62 43.68 33.94 Both chr7 20 25171815 25171896 Ser GCT aagcacacac tttcactttt 0 0 77.62 43.68 33.94 Both chr7 21 25699083 25699171 Met CAT acagcacaac ttttttccaa 25699121 25699134 37.42 32.33 5.09 Eufind chr7 22 26157242 26157315 Ile AAT tttagcagaa cttttatttt 0 0 79.79 57.07 22.72 Both chr7 23 26279659 26279730 His GTG gacacaagtg aataaaattt 0 0 63.70 36.75 26.95 Both chr7 24 26627674 26627746 Ala AGC atgtcaaatt cattaattgt 0 0 68.12 43.78 24.34 Both chr7 25 27934742 27934813 Pro TGG tttcgtcgaa ttaatttact 0 0 73.73 45.85 27.88 Both chr7 26 28647641 28647722 Ser TGA aaatcatacc catgattttt 0 0 78.02 45.58 32.44 Both chr7 27 29439847 29439776 His GTG aaccaacaat catttgtact 0 0 63.70 36.75 26.95 Both chr7 28 29422119 29422049 Gly GCC gttcatcaag ttttaccttt 0 0 64.91 47.13 17.78 Eufind chr7 29 29159493 29159421 Ala CGC tagcacaaat cttccttttt 0 0 65.14 41.26 23.88 Both chr7 30 28304895 28304825 Gly CCC gttcaaataa ttatttttgc 0 0 69.01 36.42 32.59 Both chr7 31 26085267 26085187 Leu CAG tgagtacaaa aaaaattttt 0 0 68.57 39.87 28.70 Both chr7 32 25971454 25971383 Trp CCA ggtaccaaca ataccccgat 0 0 77.63 55.47 22.16 Both chr7 33 25170858 25170777 Ser GCT aagcaaaaaa ttaatttttt 0 0 77.14 43.19 33.95 Both chr7 34 24723494 24723423 Asp GTC caacaacaaa aattagtttt 0 0 70.78 52.44 18.34 Both chr7 35 24546250 24546177 Asn GTT aaacacaaaa atttttttaa 0 0 80.15 54.55 25.60 Both chr7 36 22314870 22314799 Gly TCC atcagcgaaa aattttttgg 0 0 74.33 49.53 24.80 Both chr7 37 21657920 21657849 Pseudo ??? aaaggcgaaa aattttccag 0 0 25.66 31.96 -6.30 Eufind chr7 38 15813120 15813049 Pro CGG gattgttgcc cattgtattt 0 0 70.48 42.72 27.76 Both chr7 39 15508856 15508785 Gln TTG aaacccgaaa atcccccatc 0 0 61.03 34.16 26.87 Both chr7 40 14190709 14190636 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr7 41 14180768 14180697 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr7 42 9437897 9437816 Ser AGA taaacaagaa aacattactt 0 0 84.20 51.76 32.44 Both chr7 43 9253524 9253449 Ser CGA ttaacagatc ttttttgctt 0 0 45.36 26.07 19.29 Eufind chr7 44 8234922 8234850 Glu CTC ctttcataaa atttttttat 0 0 79.07 55.53 23.54 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr8 1 57071 57136 Ser CGA ttgaactatc gttctctact 0 0 29.36 13.39 15.97 Eufind chr8 2 1035968 1036039 Gly TCC accataagat cttttttggt 0 0 74.33 49.53 24.80 Both chr8 3 1037254 1037325 Gly TCC tgtacgcata tctttttgtt 0 0 74.33 49.53 24.80 Both chr8 4 4015137 4015210 Glu TTC atcatcagaa cattttcttt 0 0 65.74 41.84 23.90 Both chr8 5 4055785 4055858 Glu TTC ttgaacagaa caaacttttt 0 0 65.74 41.84 23.90 Both chr8 6 4394613 4394684 Trp CCA taacaaggcc aaatccccga 0 0 77.63 55.47 22.16 Both chr8 7 4412856 4412927 Trp CCA ttacaaggcc aaatccccga 0 0 77.63 55.47 22.16 Both chr8 8 4559627 4559707 Leu AAG gtactaacaa taatgttttt 0 0 69.68 40.32 29.36 Both chr8 9 5843111 5843184 Val AAC tgaacagctc ttttattttt 0 0 76.67 54.09 22.58 Both chr8 10 5861441 5861513 Arg CCG aagttcatat ctaaatttta 0 0 69.43 54.73 14.70 Both chr8 11 8872746 8872818 Arg TCT atacaacaag tcttactttt 0 0 70.00 54.05 15.95 Both chr8 12 9238053 9238124 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr8 13 9252268 9252348 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr8 14 9253847 9253920 Met CAT tccctgttaa cgcgaaccgg 0 0 58.29 43.94 14.35 Both chr8 15 9272751 9272824 Pro TGG aatttggaaa cctattactt 0 0 60.50 28.44 32.06 Both chr8 16 9272951 9273024 Trp CCA atttttgaaa attccatcta 0 0 67.94 39.21 28.73 Both chr8 17 15195582 15195654 Arg TCT cagcaacaaa caattatttt 0 0 70.00 54.05 15.95 Both chr8 18 18292227 18292298 Asp GTC taacaagaag tttctcatgt 0 0 66.33 48.55 17.78 Both chr8 19 18363271 18363343 Ala AGC gacacatccc atttgttcaa 0 0 68.12 43.78 24.34 Both chr8 20 18367605 18367677 Ala AGC gcctcgtgct ttttgcccgt 0 0 68.12 43.78 24.34 Both chr8 21 19453388 19453473 Tyr GTA taaccacaaa ttttttttct 19453425 19453437 77.02 49.28 27.74 Both chr8 22 19467781 19467866 Tyr GTA ttttcaaaaa ttctttcttt 19467818 19467830 75.28 47.55 27.73 Both chr8 23 19628425 19628497 Lys CTT agttgtgtag ttgttttttc 0 0 83.73 61.76 21.97 Both chr8 24 19639301 19639373 Lys CTT taccatcctg cctttcattt 0 0 83.73 61.76 21.97 Both chr8 25 19870790 19870862 Lys CTT ttggacaaag tgttttttat 0 0 83.73 61.76 21.97 Both chr8 26 22187003 22187075 Ala CGC ttgcatcaat ttttgtcatt 0 0 65.78 42.22 23.56 Both chr8 27 22318948 22319021 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr8 28 24461051 24461124 Ile AAT tctatcgact aattattttt 0 0 72.88 50.16 22.72 Both chr8 29 25318422 25318494 Phe GAA ctgaacaaaa tgatttaaaa 0 0 69.85 49.16 20.69 Both chr8 30 25945247 25945319 Glu CTC ccatcagcaa tttctttttg 0 0 79.07 55.53 23.54 Both chr8 31 26815018 26815091 Val AAC aaatcaaagc tttttttccc 0 0 77.22 55.27 21.95 Both chr8 32 26817341 26817414 Val AAC agcacaagat atttttttgt 0 0 77.22 55.27 21.95 Both chr8 33 26906390 26906470 Leu AAG agcatcaacc ttatttttct 0 0 69.68 40.32 29.36 Both chr8 34 27064629 27064700 Thr TGT aacaagaagc ttttttaaat 0 0 80.01 56.56 23.45 Both chr8 35 27824052 27824124 Glu CTC caagacatga ttttgtattt 0 0 79.07 55.53 23.54 Both chr8 36 27996649 27996722 Val CAC caaacaagtt ttgatatttc 0 0 80.53 52.65 27.88 Both chr8 37 28312203 28312123 Leu AAG aatatagcaa ttaataatct 0 0 67.78 40.71 27.07 Both chr8 38 27948596 27948525 Pro CGG acaacgcaaa gttttttttt 0 0 74.11 46.34 27.77 Both chr8 39 27863210 27863138 Arg CCG aagcagaaaa tgtttttttt 0 0 69.43 54.73 14.70 Both chr8 40 22787514 22787433 Ser GCT tgccataact cttctttttt 0 0 77.62 43.68 33.94 Both chr8 41 21033904 21033831 Ile AAT ttttctgaat ttaaaatttt 0 0 79.79 57.07 22.72 Both chr8 42 20551015 20550945 Gly CCC atgacagaaa atcggttttg 0 0 64.26 37.12 27.14 Both chr8 43 20257835 20257764 Pseudo GTT atgatgaaac tcaattttgt 0 0 23.77 34.53 -10.76 Eufind chr8 44 19230034 19229964 Gly GCC ggacagcaag tgaacttcta 0 0 71.56 51.49 20.07 Both chr8 45 17189128 17189043 Tyr GTA ggaatacaaa atatgatttt 17189091 17189079 76.38 48.65 27.73 Both chr8 46 9256008 9255935 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr8 47 9246066 9245995 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr8 48 9238450 9238377 Arg ACG gagacggggt cagtcttcca 0 0 61.16 46.00 15.16 Eufind chr8 49 5797718 5797636 Pseudo GTA ccctgaggag cttgttgtag 0 0 21.48 16.93 4.55 Eufind chr8 50 3069383 3069311 Arg TCT acgcagagaa acttttaatt 0 0 70.00 54.05 15.95 Both chr8 51 1495180 1495101 Pseudo TGT catatctctt tactagaaat 1495144 1495137 20.65 26.64 -5.99 Eufind chr8 52 197992 197921 Gln TTG caacaataat tttttttttc 0 0 77.77 61.50 16.27 Both   chr9 1 1114988 1115060 Glu CTC tgtgtcataa tttatgcgtt 0 0 79.07 55.53 23.54 Both chr9 2 1127344 1127415 Glu CTC gaggccataa attccttttt 0 0 63.26 40.34 22.92 Both chr9 3 4637795 4637866 Arg TCT cgaaagaaaa atcttatttc 0 0 62.51 33.29 29.22 Eufind chr9 4 4643315 4643402 Ser GCT tcaacaactt gcacggaagt 4643353 4643360 33.52 25.99 7.53 Both chr9 5 4643653 4643772 Cys GCA taggcaagtg aaagaaaatg 4643691 4643740 40.95 26.67 14.28 Both chr9 6 9196096 9196182 Tyr GTA catcgataac agtttatttc 9196133 9196146 77.28 49.55 27.73 Both chr9 7 10192898 10192970 Pseudo ??? taacacaagc attttcgctc 0 0 24.79 24.99 -0.20 Eufind chr9 8 10292002 10292073 Asp GTC agtcactgag ctattaattt 0 0 70.78 52.44 18.34 Both chr9 9 10297573 10297644 Asp GTC caccaatgaa cctttccttt 0 0 70.78 52.44 18.34 Both chr9 10 10860256 10860328 Phe GAA atcaacaggg tttaatttca 0 0 77.43 54.21 23.22 Both chr9 11 12695725 12695797 Lys CTT aaatgacaag cagtttattt 0 0 83.73 61.76 21.97 Both chr9 12 13045853 13045926 Val AAC agcacaagat agttaacttt 0 0 77.22 55.27 21.95 Both chr9 13 14635742 14635822 Leu CAG taaatgcaaa taaatatttt 0 0 68.57 39.87 28.70 Both chr9 14 16115000 16115072 Ala CGC atgacacgat ttctccaatt 0 0 65.78 42.22 23.56 Both chr9 15 18366368 18366441 Ile AAT gctaccaact attctttttt 0 0 79.79 57.07 22.72 Both chr9 16 19504041 19504114 Val AAC aatcagcaat tatttttatt 0 0 76.95 55.01 21.94 Both chr9 17 19571338 19571418 Leu AAG agccaaggaa aaaacaattt 0 0 69.68 40.32 29.36 Both chr9 18 21558325 21558396 Thr CGT tgcgtgagct cgatcccttt 0 0 82.82 60.66 22.16 Both chr9 19 21903134 21903206 Arg TCT agacatagaa tttattattt 0 0 70.00 54.05 15.95 Both chr9 20 22390982 22390911 Pro CGG agttcgaatc atgttttgtc 0 0 74.11 46.34 27.77 Both chr9 21 22115406 22115334 Arg CCG ctggcaagat tgtttttttt 0 0 69.43 54.73 14.70 Both chr9 22 21037290 21037218 Ala AGC accccaacat tttaaccttt 0 0 68.12 43.78 24.34 Both chr9 23 20938107 20938036 Pro TGG tggcatgaaa cttttttgtt 0 0 74.34 46.93 27.41 Both chr9 24 20248301 20248230 Lys TTT cattcaaaac ttcatttttg 0 0 86.68 59.76 26.92 Both chr9 25 19757440 19757369 Thr TGT gcatatatag aattttttgg 0 0 82.64 57.48 25.16 Both chr9 26 19500016 19499943 Asn GTT agagacaaaa catttatttt 0 0 76.72 54.57 22.15 Both chr9 27 14565384 14565311 Ile AAT cagacgtcaa ttttttttgt 0 0 71.86 49.15 22.71 Both chr9 28 14452637 14452564 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr9 29 13763909 13763839 Gly CCC cactgttaaa ctcgcactta 0 0 69.01 36.42 32.59 Both chr9 30 13153411 13153338 Pseudo AAC ttcacaagat ttttattttt 0 0 34.22 34.17 0.05 Eufind chr9 31 12091973 12091887 Tyr GTA aacactaaat caatttttgt 12091936 12091923 77.56 49.83 27.73 Both chr9 32 11892847 11892774 His GTG tggataaggg catcccatta 0 0 52.58 33.34 19.24 Both chr9 33 10819558 10819486 Lys CTT agacaagctg tcaacatttt 0 0 83.73 61.76 21.97 Both chr9 34 9866256 9866176 Leu CAA ctttcaagat taatacggag 0 0 46.18 22.32 23.86 Eufind chr9 35 9521795 9521722 Val CAC caatcacaat aattattttt 0 0 82.62 54.74 27.88 Both chr9 36 9519568 9519495 Val CAC cagtcacatg cataattttt 0 0 82.62 54.74 27.88 Both chr9 37 9461281 9461201 Leu AAG ggtcaagaaa aaaaccattt 0 0 69.68 40.32 29.36 Both chr9 38 6546386 6546306 Leu CAG ctttcaagat taatacggag 0 0 46.88 21.50 25.38 Eufind chr9 39 244314 244242 Arg ACG tagcacgaat tatttagttt 0 0 74.06 52.84 21.22 Both   chr10 1 320945 321018 Thr AGT tgctgcaaaa cattactttt 0 0 76.42 49.45 26.97 Both chr10 2 326885 326957 Arg CCT gaaatcacaa ctcattccgt 0 0 76.26 56.99 19.27 Both chr10 3 10287705 10287785 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr10 4 10289284 10289357 Met CAT tccctgttaa cgcgaaccgg 0 0 58.29 43.94 14.35 Both chr10 5 10304163 10304233 Gly GCC ataggacgta agcttaattt 0 0 62.56 43.46 19.10 Both chr10 6 10306887 10306958 Thr GGT tgaataagaa ttttttactt 0 0 60.49 29.15 31.34 Both chr10 7 10307476 10307548 Glu TTC gtctagtgat gggagtatta 0 0 50.26 28.60 21.66 tRNAscan chr10 8 10307610 10307693 Tyr GTA aattcttcct aaaatctagg 0 0 53.74 27.95 25.79 Both chr10 9 10308061 10308134 Asp ATC acgccccgcg aactagggtt 0 0 61.09 43.63 17.46 Both chr10 10 10336285 10336371 Ser GGA agattatgga tttttcttaa 0 0 55.11 27.45 27.66 Both chr10 11 10339231 10339303 Phe GAA acaagaaaag cagaaaaaag 0 0 67.75 43.53 24.22 Both chr10 12 10343024 10343096 Met CAT gtgataaatt ggtaggtaga 0 0 55.64 35.36 20.28 Both chr10 13 10372854 10372927 His GTG tggataagag catcccatta 0 0 48.95 33.05 15.90 Both chr10 14 10382796 10382867 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr10 15 10390683 10390756 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr10 16 11239059 11239131 Arg ACG aacaaaacat tatcattttt 0 0 73.66 52.08 21.58 Both chr10 17 17258102 17258175 Ile AAT ttcgcacgac tttttttttt 0 0 79.79 57.07 22.72 Both chr10 18 19201748 19201823 Lys TTT ttgtaaaatc agttagcaag 0 0 52.13 46.14 5.99 Eufind chr10 19 19933916 19933987 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr10 20 19941818 19941891 Arg ACG gagacggggt cagccttcca 0 0 61.16 46.00 15.16 Eufind chr10 21 19948823 19948895 Thr TGT tgttatgtaa tttttctcta 0 0 67.46 44.88 22.58 Both chr10 22 19958456 19958523 Pseudo CAT tagtttaaca ctccatattc 0 0 23.75 8.37 15.38 Eufind chr10 23 19958662 19958733 Arg TCT tatgaaaaaa atcttatttc 0 0 62.51 33.29 29.22 Eufind chr10 24 20131902 20131975 Asn GTT tacccaacaa agttttttgt 0 0 80.15 54.55 25.60 Both chr10 25 20221878 20221949 His GTG taccaacaaa aattattttt 0 0 63.70 36.75 26.95 Both chr10 26 20732292 20732364 Ala AGC cactcattcc ttttcgtttt 0 0 68.12 43.78 24.34 Both chr10 27 20817050 20817123 His GTG tggataaggg catcctatta 0 0 47.83 32.50 15.33 Both chr10 28 21928624 21928711 Ser GCT tttggaacgg ccccctcgga 0 0 59.95 27.59 32.36 Both chr10 29 22168143 22168215 Ala TGC aaacaaaatc ttaatctcta 0 0 66.31 41.98 24.33 Both chr10 30 22341074 22341144 Gly GCC caaataacaa aattcgtctt 0 0 71.56 51.49 20.07 Both chr10 31 22254095 22254009 Met CAT aagacaggat actttttttc 22254057 22254045 60.84 40.73 20.11 Both chr10 32 22252396 22252323 Met CAT tccctgttaa cgtgaaccgg 0 0 56.33 41.97 14.36 Both chr10 33 22137381 22137310 Gln TTG aaacccgaaa attttttctg 0 0 43.71 27.77 15.94 Both chr10 34 20609913 20609841 Lys CTT acagccaaaa atattgcttt 0 0 83.73 61.76 21.97 Both chr10 35 20609680 20609608 Lys CTT acagccaaaa atatcgcttt 0 0 79.33 57.35 21.98 Both chr10 36 19950172 19950086 Ser GGA agattatgga tttttcttaa 0 0 55.11 27.45 27.66 Both chr10 37 19947183 19947111 Phe GAA acaagaaaag cagaaaaaag 0 0 67.75 43.53 24.22 Both chr10 38 19942215 19942144 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr10 39 18007512 18007440 Ala AGC ttaccataat tctgtaacag 0 0 68.12 43.78 24.34 Both chr10 40 17959741 17959670 Thr TGT tgaagcaaaa attttatttt 0 0 78.52 50.14 28.38 Both chr10 41 17337827 17337754 Asn GTT tcaccaccta ttatttttat 0 0 81.83 55.73 26.10 Both chr10 42 16250069 16249997 Lys CTT caccagcaaa ttgtttgagt 0 0 83.73 61.76 21.97 Both chr10 43 15767922 15767852 Cys GCA cgtatttttt gatcaataaa 0 0 52.64 32.60 20.04 Eufind chr10 44 15560265 15560192 Ile TAT tacaatgtta aatttaaatt 0 0 85.40 69.82 15.58 Both chr10 45 14920894 14920811 Leu CAA aagcgtcaca attatttttc 0 0 73.73 46.10 27.63 Both chr10 46 13558362 13558291 Pseudo ??? tgcagcgaaa aattttccag 0 0 21.41 24.22 -2.81 Eufind chr10 47 13091422 13091351 Trp CCA tgtcacagcc aacccccgaa 0 0 77.63 55.47 22.16 Both chr10 48 11472327 11472242 Tyr GTA gaagcagtgt tctgaccttt 11472290 11472278 76.38 48.65 27.73 Both chr10 49 11279137 11279066 Asp GTC ggacacgcaa ttcatttttt 0 0 70.78 52.44 18.34 Both chr10 50 10401849 10401770 Leu TAG tttcaactta gtctcgaaaa 0 0 57.27 24.47 32.80 Both chr10 51 10391080 10391009 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr10 52 10376593 10376513 Leu CAA ctttcaagat taatacggag 0 0 55.48 28.76 26.72 Both chr10 53 10375014 10374941 Met CAT tccctgttaa cgcgaaccgg 0 0 58.29 43.94 14.35 Both chr10 54 10356118 10356045 Pro TGG aatttggaaa cctattactt 0 0 60.50 28.44 32.06 Both chr10 55 10355918 10355845 Trp CCA atttttgaaa attccatcta 0 0 67.94 39.21 28.73 Both chr10 56 10337597 10337525 Thr TGT tgttatgtaa tttttctcta 0 0 67.46 44.88 22.58 Both chr10 57 10328000 10327933 Pseudo CAT tagtttaaca ctccatattc 0 0 23.75 8.37 15.38 Eufind chr10 58 10327794 10327723 Arg TCT tatgaaaaaa atcttatttc 0 0 56.81 32.06 24.75 Eufind chr10 59 10309987 10309917 Cys GCA cgtatttttt gatcaataaa 0 0 64.20 34.49 29.71 Both chr10 60 10304740 10304667 Met CAT agcgctccag ttagcagtct 0 0 61.45 34.79 26.66 Both chr10 61 10303422 10303335 Ser TGA attaggctgt tttgctttcc 0 0 54.93 31.13 23.80 Both chr10 62 10299817 10299730 Ser GCT tttggaacgg ccccctcgga 0 0 59.95 27.59 32.36 Both chr10 63 10298589 10298518 Gln TTG aaacccgaaa attttttatg 0 0 61.03 34.16 26.87 Both chr10 64 10291445 10291372 His GTG tggataaggg catcccatta 0 0 44.89 25.65 19.24 Both chr10 65 10281507 10281436 Val GAC gggacgggga aacccaatgt 0 0 51.67 16.10 35.57 Both chr10 66 10132365 10132294 Met CAT ggacaacaat catttaaaat 0 0 68.81 41.37 27.44 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr11 1 255566 255639 Ile AAT aaacataaaa tttcctcttt 0 0 79.79 57.07 22.72 Both chr11 2 294114 294188 Pro CGG tatcaccagc taactttttt 0 0 40.26 23.36 16.90 Eufind chr11 3 584869 584950 Ser TGA aaacagcagc accatttttt 0 0 80.82 48.39 32.43 Both chr11 4 879003 879086 Leu CAA aaaaactgag ttatatatat 0 0 66.36 41.74 24.62 Eufind chr11 5 1439560 1439633 Val CAC aagacaacaa caaacatgtt 0 0 82.62 54.74 27.88 Both chr11 6 2515735 2515806 Glu TTC catcaacaca atttttgttt 0 0 72.60 50.65 21.95 Both chr11 7 3480690 3480763 His GTG tggataaggg catcctattt 0 0 41.28 25.65 15.63 Both chr11 8 4074752 4074824 Arg TCT attacatgag ttttgttttt 0 0 72.11 52.26 19.85 Both chr11 9 5807756 5807827 Lys TTT aacagcgtga actatgttta 0 0 86.59 59.69 26.90 Both chr11 10 10756688 10756760 Met CAT gtgataaatt ggtaggatgg 0 0 47.89 27.62 20.27 Both chr11 11 18387177 18387248 Pro AGG aatcgtaaaa tgattttttt 0 0 63.85 36.96 26.89 Both chr11 12 19890434 19890507 Glu TTC tgaacagaaa gctcttttta 0 0 63.65 39.75 23.90 tRNAscan chr11 13 22384252 22384325 Val CAC agaacgaatt taatttttaa 0 0 82.62 54.74 27.88 Both chr11 14 22752180 22752252 Ala AGC aatacatgta aactttttaa 0 0 68.12 43.78 24.34 Both chr11 15 23261180 23261251 Pro AGG gcagacagat gtctgaaatt 0 0 73.34 46.44 26.90 Both chr11 16 23262052 23262123 Pro AGG tagcacagct atctgaaatc 0 0 73.34 46.44 26.90 Both chr11 17 23262452 23262523 Pro AGG agcaaacaaa tattactgtc 0 0 71.75 43.88 27.87 Both chr11 18 23343260 23343341 Ser GCT tcatccaagc attttataat 0 0 77.62 43.68 33.94 Both chr11 19 24762915 24762988 Asn GTT taacatgaat cttactttgt 0 0 76.22 55.19 21.03 Both chr11 20 26491473 26491544 Pro AGG tcatcatcaa tatttttttt 0 0 71.75 43.88 27.87 Both chr11 21 27328461 27328541 Leu CAG ctttcaagat taatacggag 0 0 46.88 21.50 25.38 Eufind chr11 22 28193431 28193503 Lys CTT cagcatgtga atgctttttt 0 0 83.73 61.76 21.97 Both chr11 23 26617158 26617087 Gly TCC ctgacaaata attatttgca 0 0 68.14 49.35 18.79 Both chr11 24 24530809 24530727 Leu TAA taagcattca aaaaaaaatg 0 0 69.30 37.13 32.17 Both chr11 25 22818308 22818220 Ser GCT tttggaacag cccccttgga 0 0 44.39 24.52 19.87 Both chr11 26 21808553 21808482 Pro TGG cagcatcaaa ctttcttcta 0 0 73.73 45.85 27.88 Both chr11 27 21784099 21784027 Arg CCT aacaatataa attatttata 0 0 72.16 52.89 19.27 Both chr11 28 13970942 13970869 Asp GTC acgccccgcg aactagggtt 0 0 57.07 42.60 14.47 Both chr11 29 6036421 6036348 Pro TGG aatttggaaa catattactt 0 0 38.52 24.27 14.25 Eufind chr11 30 5989797 5989725 Ala TGC ttacatgttc tttcgtcaat 0 0 66.31 41.98 24.33 Both chr11 31 2853667 2853596 Pro AGG agagcaagat tattagtttt 0 0 71.75 43.88 27.87 Both chr11 32 2333522 2333450 Ala AGC caaacacttc acgtttttaa 0 0 67.37 44.89 22.48 Both chr11 33 1378932 1378860 Ala TGC aaacatcgaa gtttttattt 0 0 66.31 41.98 24.33 Both chr11 34 548933 548862 Pro CGG tttccagaaa tttttttaaa 0 0 74.11 46.34 27.77 Both   chr12 1 311217 311288 Pro CGG tatcaccaaa cttaacgttt 0 0 69.81 45.03 24.78 Both chr12 2 625417 625498 Ser TGA aaacaagagc accatttttt 0 0 80.82 48.39 32.43 Both chr12 3 915407 915490 Leu CAA aaactgtgag ttatatatat 0 0 73.73 46.10 27.63 Both chr12 4 1349213 1349286 Val CAC aagacagcaa caaacatgtt 0 0 82.62 54.74 27.88 Both chr12 5 2734649 2734722 Glu TTC gttcaacaat ctttttctga 0 0 65.74 41.84 23.90 Both chr12 6 3871433 3871505 Arg TCT gaaagagaag tcttcgtttt 0 0 72.11 52.26 19.85 Both chr12 7 4692117 4692196 Lys TTT tttggcaaaa ctagcagagg 0 0 20.93 12.31 8.62 Eufind chr12 8 4693814 4693885 Lys TTT atggtcagaa cttaaacttt 0 0 86.59 59.69 26.90 Both chr12 9 4696594 4696666 Ala TGC tgtcataaaa ttatttttct 0 0 66.31 41.98 24.33 Both chr12 10 5610252 5610324 Met CAT gtgataaatt ggtaggtaga 0 0 49.73 30.30 19.43 Both chr12 11 5621012 5621091 Leu TAG tttcaactta gtctcgaaaa 0 0 50.36 17.55 32.81 tRNAscan chr12 12 5631759 5631830 Asn GTT tcccccttgt atttgattca 0 0 77.16 56.33 20.83 Both chr12 13 10072577 10072650 Ile TAT agcccagttt ttatttacca 0 0 79.40 64.19 15.21 Both chr12 14 11283584 11283656 Phe GAA acaagaaaag cagaaaaaag 0 0 67.75 43.53 24.22 Both chr12 15 11287376 11287448 Met CAT gtgataaatt ggtagataga 0 0 54.93 34.66 20.27 Both chr12 16 11412568 11412641 His GTG tggataaggg catcccatta 0 0 45.67 26.42 19.25 Both chr12 17 13455814 13455901 Ser TGA attaggctgt tttgctttcc 0 0 53.43 28.59 24.84 Both chr12 18 17646655 17646726 Pro AGG ttgcacaaac tcttaaattt 0 0 71.75 43.88 27.87 Both chr12 19 18653801 18653884 Tyr ATA agttcatcga aaaatctata 0 0 32.79 27.16 5.63 Eufind chr12 20 18946614 18946685 Pro AGG caaaacaaac tgtgattttt 0 0 65.99 44.52 21.47 Both chr12 21 19332770 19332843 Met CAT gcgctccaga cttagcagtc 0 0 43.05 16.58 26.47 Eufind chr12 22 20500862 20500949 Ser GCT tcaacaactt gcacggaagt 20500900 20500907 38.42 30.88 7.54 Both chr12 23 20501198 20501317 Cys GCA taggcaagtg aaagaaaatg 20501236 20501285 40.95 26.67 14.28 Both chr12 24 20565029 20565101 Lys TTT ttgtaaaatc aaaaaaacca 0 0 77.00 59.95 17.05 Both chr12 25 20569190 20569261 Asn GTT agtccgttct atttgattca 0 0 77.16 56.33 20.83 Both chr12 26 20570761 20570834 Met CAT agatccgatt tctgacctgc 0 0 56.91 31.60 25.31 Both chr12 27 20580561 20580633 Met CAT actcagcttg aaaccggccg 0 0 59.47 28.55 30.92 Both chr12 28 20590829 20590900 Gln TTG accgaccgtt agcatactta 0 0 51.09 21.78 29.31 Both chr12 29 21265415 21265486 Pro AGG tgacatcgaa tattattttt 0 0 71.75 43.88 27.87 Both chr12 30 21673161 21673231 Gly CCC ttgacagaaa tttgtttttt 0 0 69.01 36.42 32.59 Both chr12 31 23006154 23006225 Pro AGG aatcaaacaa agattttatt 0 0 71.75 43.88 27.87 Both chr12 32 23533298 23533370 Lys CTT aaaatcaaaa atttcatttt 0 0 81.99 60.02 21.97 Both chr12 33 23770590 23770662 Arg ACG atgacaagat cacagttttt 0 0 72.05 48.94 23.11 Both chr12 34 25083802 25083873 Pseudo ??? ctttgcgaaa aattttccag 0 0 28.88 32.31 -3.43 Eufind chr12 35 25843391 25843477 Met CAT ggacatcgat attttttttt 25843429 25843441 60.84 40.73 20.11 Both chr12 36 26705351 26705421 Gly GCC tgacaacgag ttttgttctt 0 0 61.09 41.00 20.09 Eufind chr12 37 27054703 27054776 Glu TTC aaatcaagaa cattaatttt 0 0 65.35 41.10 24.25 Both chr12 38 27094518 27094589 Gln CTG cttcagaaaa tcttttttcc 0 0 67.04 47.24 19.80 Both chr12 39 27266292 27266364 Ala TGC caaccgatca ttttttttta 0 0 66.31 41.98 24.33 Both chr12 40 27168147 27168074 Thr AGT tcaacaagca ttttgattat 0 0 76.42 49.45 26.97 Both chr12 41 27087776 27087704 Arg CCT gtaaacaaca tagtaatttt 0 0 72.16 52.89 19.27 Both chr12 42 25837300 25837227 Val AAC ctaatcaaga attttttctt 0 0 76.67 54.09 22.58 Both chr12 43 25077060 25076987 Glu TTC tatcatcaaa ttctttttca 0 0 65.35 41.10 24.25 Both chr12 44 23857345 23857273 Lys CTT caacaagaag atttcatttt 0 0 83.73 61.76 21.97 Both chr12 45 23128860 23128789 Gly TCC aacaataaca cttttttcct 0 0 73.14 51.13 22.01 Both chr12 46 22648646 22648573 Thr AGT tcgccaggaa aaattttgtt 0 0 76.90 50.29 26.61 Both chr12 47 22528486 22528414 Thr TGT tgttatgtaa tttttctcta 0 0 67.46 44.88 22.58 Both chr12 48 22527982 22527910 Thr TGT tgttatgtaa tttttctcta 0 0 61.36 44.65 16.71 Both chr12 49 22527478 22527406 Thr TGT tgttatgtaa tttttctcta 0 0 67.46 44.88 22.58 Both chr12 50 20868702 20868620 Leu TAA aactcaacta taaaattttt 0 0 70.42 37.83 32.59 Both chr12 51 20740271 20740198 Met CAT agggggaaga aatcacgtca 0 0 56.83 30.53 26.30 Both chr12 52 20697953 20697867 Ser TGA gcgagcgcag cgaggtcata 0 0 53.41 23.45 29.96 Both chr12 53 20644099 20644026 Met CAT agggggaaga aatcacgtca 0 0 56.83 30.53 26.30 Both chr12 54 20570035 20569962 Asp GTC gttacgaaag cccgatcttc 0 0 77.79 57.73 20.06 Both chr12 55 20525435 20525362 Met CAT agggggaaga aatcacgtca 0 0 56.83 30.53 26.30 Both chr12 56 19498283 19498194 Met CAT atgacacgac accgtccatt 19498245 19498230 61.85 41.74 20.11 Both chr12 57 19333353 19333283 Gly GCC ataggacgta agcttaattt 0 0 58.26 42.15 16.11 Both chr12 58 13424382 13424309 Pro TGG cattaccttc cctattactt 0 0 42.90 31.11 11.79 Eufind chr12 59 13394778 13394706 Phe GAA acaagaaaag caggaaaaaa 0 0 60.45 36.23 24.22 Both chr12 60 11281951 11281879 Thr TGT tgttatgtaa tttttctcta 0 0 62.76 44.10 18.66 Eufind chr12 61 8529286 8529214 Met CAT gtgataaatt ggtagaaaaa 0 0 55.64 35.36 20.28 Both chr12 62 5640565 5640492 Pro TGG aatttggaaa cctattactt 0 0 60.50 28.44 32.06 Both chr12 63 5640365 5640292 Trp CCA atttttgaaa attccatcta 0 0 62.30 37.38 24.92 Both chr12 64 5632156 5632083 Arg ACG gagacggggt tagtcttcca 0 0 59.66 45.64 14.02 Eufind chr12 65 5615254 5615183 Asn GTT tcccccttgt atttgattca 0 0 74.83 52.07 22.76 Both chr12 66 3400524 3400451 Thr AGT aaaccgaaaa ttttttacat 0 0 76.42 49.45 26.97 Both chr12 67 3358918 3358846 Arg CCT accaacaata aaatttatat 0 0 72.16 52.89 19.27 Both chr12 68 3076289 3076218 Pro AGG aaatgtaaac catttttaca 0 0 71.75 43.88 27.87 Both chr12 69 2431727 2431655 Ala AGC ctaacacatc atttttttaa 0 0 68.12 43.78 24.34 Both chr12 70 1286522 1286450 Ala TGC aaacatcaaa ctctaaattt 0 0 66.31 41.98 24.33 Both chr12 71 595335 595264 Pro CGG tcttcagaaa ttaatcgttt 0 0 67.92 46.16 21.76 Both

---

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.