Genomic tRNA Database: Nitrosopumilus maritimus SCM1

tRNAscan-SE Analysis of Nitrosopumilus maritimus SCM1

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Predicted tRNA Secondary Structures

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chr.trna4 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 70.62
Seq: GGGCCGGTGGTTTAGGGGTATAATGCCTCGTTCGCAACGAGGATGtCGAGGGTTCGATTCCCTCCCGGTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (1-74)	Length: 74 bp
Type: Ala	Anticodon: GGC at 35-37 (35-37)	Score: 62.77
Seq: GGGCCGGTCGTCTAGTCtGGTAGGATAGGTGCATGGCATGCATCGGAtCAAGGGTTCAAATCCCTTCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna30 (1-74)	Length: 74 bp
Type: Ala	Anticodon: TGC at 35-37 (35-37)	Score: 73.24
Seq: GGGCCGGTAGTATAGCCtGGTAGTATACCCGCCTTGCACGCGGGGGGtCACGGATTCAAATTCCGTCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (1-75)	Length: 75 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 55.09
Seq: GGGCTTGTGGCGCAGCAtGGAtAGCGTGGTAGCCTCCTAAGTTACAGGtCGAGGGATCGAAGCCCTCCAAGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGCTTGTGGCGCAG[AGTCAATTTGACGCGAAA]CATGGATAGCGTGGTAGCCTCCTAAGTTACAGGTCGAGGGATCGAAGCCCTCCAAGCCCG

chr.trna13 (1-75)	Length: 75 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 62.07
Seq: GGACTCGTTGCATAGCTtGGAtAGTGCGAACGCTTGCGGAGCGTTAGGtCGCCGGTTCGAATCCGGTCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna41 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 54.05
Seq: GGACTCGTTGCACAGCCtGGAtAGTGCGGGCGGCTTCGAACCGCCAGGtCGAGGGATCGAAGCCCTCCGAGCCCT
Str: >>.>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.<<.

chr.trna23 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 65.64
Seq: GGGCCCATAGCTCAGCAtGGAtAGAGTGTTGGACTTCTAATCCAATGGtCAAGGGATCGAAGCCCTTTGGGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (1-77)	Length: 77 bp
Type: Asn	Anticodon: GTT at 35-37 (35-37)	Score: 64.81
Seq: GCCGCCCTAGCTCAGCGtGGTAGAGCATCCGACTGTTAATCGGACGGtCGTCAGTTCAAGTCTGATGGGCGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (1-78)	Length: 78 bp
Type: Asp	Anticodon: GTC at 37-39 (37-39)	Score: 64.16
Seq: GCCCTTGTAGTATAGCCcGGTctAGAATTCGGCCCTGTCACGGCTGAGACGCGTGTTCAAATCCCGCCGAGGGCGCCA
Str: >>>>>>>..>>.>...........<.<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<....

chr.trna19 (1-72)	Length: 72 bp
Type: Cys	Anticodon: GCA at 33-35 (33-35)	Score: 25.47
Seq: GGTACTCTGGCAGAACGGTTATGCGTGGGCCTGCAAAGCCTATACaAGGGGGTTCGACTCCCTCGGGTACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (1-91)	Length: 91 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 52.48
Possible intron: 39-56 (39-56)
Seq: AGCCCGATAGTCTAGCGGTcaAGGATTCTGCCCTCTGGatctcacaaagtggatatAGGCGGAGACGGCAGTTCGAATCTGCCTCGGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.........................<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna42 (1-73)	Length: 73 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 58.73
Seq: AGCCCGATAGTGTAGAGGTcaAGCATATGGGCCTTTGGAGCCCGTGACGGCAGTTCGAATCTGCCTCGGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1-78)	Length: 78 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 77.67
Seq: GCTCCCATAGTGTAGTCcGGTtaAGCATACAGCCCTCTCAAGGCTGTGACCCGGGTTCAAATCCCGGTGGGAGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna44 (1-79)    Length: 79 bp
Type: Glu       Anticodon: TTC at 37-39 (37-39) Score: 73.75
Seq: GTTCCAGTGGTGTAGACcGGTcaAGCATACTGCCCTTTCAAGGCAGTGAtCCCGGGTTCAAATCCCGGCTGGAGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GTTCCAGTGGTGTAGACCGGTCAAGCATACTGCCCTTTCAAGGCAGTGATCCCGGGTTCAAA[ATCAATCGATGAAAA]TCCCGGCTGGAGCACCA

chr.trna43 (1-74)	Length: 74 bp
Type: Gly	Anticodon: CCC at 35-37 (35-37)	Score: 73.68
Seq: GCGGAGTTAGTTTAGTCtGGTATGATGTCAGCTTCCCAAGCTGAAGGcCGCGGGTTCAAATCCCGCACTCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna37 (1-77)	Length: 77 bp
Type: Gly	Anticodon: GCC at 36-38 (36-38)	Score: 65.50
Seq: GCAGTTATAGTACAGTCtGGTtAGTACTCGTGCTTGCCAAGTACGTGACCCGGGTTCAAATCCCGGTAACTGCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1-74)	Length: 74 bp
Type: Gly	Anticodon: TCC at 36-38 (36-38)	Score: 70.32
Seq: GCAGTCATAGTATAGCCtGGTtAGTATTCGGGGTTTCCAACCCTGTGACGCGGGTTCGAATCCCGCTGACTGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (1-72)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 44.15
Seq: GCCTTCGTAGTACAGTGGTtAGTATAGAGGATTGTGGATCCTCGGACAGGAGTTCGATTCCCCTCGAGGGCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<.

chr.trna21 (1-75)	Length: 75 bp
Type: Ile	Anticodon: GAT at 36-38 (36-38)	Score: 72.57
Seq: GGGCTCGTAGCTCAGCTtGGCtGGAGCGTTCGACTGATAATCGAAAGGtCATGAGTTCGAATCTCATCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (1-101)	Length: 101 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 50.50
Possible intron: 41-56 (41-56)
Seq: GCAGAGATATCGAAGCCcGGTcaACCGAGAGGGACTCAAGatcttccaaataggaaATCCCTTCTCTCAGGAGTtCGTGGGTTCAAATCCCACTCTCTGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna1 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 53.62
Seq: GCGGGAGTCGCCCAGCCtGGTcaACGGCGTAAGGTTCAGATCCTTATCTTCTAGGAGTtCGTGGGTTCAAATCCCACTTCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>...<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna10 (1-85)	Length: 85 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 59.05
Seq: GCGGGCGTCGCCCAGCCtGGCcaAAGGCGCTAGCTTGAGGGGCTAGTCTCTCAGGAGTtCGTGGGTTCAAATCCCATCGCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna29 (1-100) Length: 100 bp
Type: Leu       Anticodon: TAA at 37-39 (37-39) Score: 56.34
Possible intron: 41-55 (41-55)
Seq: GGAGGAGTAATCAAGCCtGGCcaAAGATGCAGGACTTAAGatcaaataatgggtgATCCTGTCTCTCAGGAGTtCGTGGGTTCAAATCCCACCTCCTCCA
Str: >>>>>>>..>>>.............<<<.>>>>>......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
BHB: GGAGGAGTAATCAAGCCTGGCCAAAG[TAAGTACACTTTGTGCTTTTGGAC]ATGCAGGACTTAAGATCAAATAATGGGTGATCCTGTCTCTCAGGAGTTCGTGGGTTCAAATCCCACCTCCTCCA

chr.trna40 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 70.70
Seq: GCGGGAGTCGCCCAGCCtGGTcaAAGGCGTAGGGCTTAGGACCCTATCTCTTAGGAGTtCGTGGGTTCAAATCCCACCTCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna2 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 71.92
Seq: GGGTCTATGGCGCAGCCaGGTAGCGCACAGGACTCTTAATCCTGCTGtCGTGGGTTCGAATCCCTCTAGACCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna39 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 70.65
Seq: GGGTCTATGGCGCAGCCaGGTAGCGCACCGGACTTTTAATCCGGTTGtCAAGGGTCCGAATCCCTTTAGACCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna8 (1-74)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 60.27
Seq: GGGCCCGTAACTCAGCTtGGTAGAGTAACCGGCTCATAACCGGTGAGcCAAGGGATCGAAGCCCTTCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna24 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 66.66
Seq: AGCGGGGTGGGGAAGCCaGGTcATCCCGGCGGGCTCATAACCCGCAGTtCAGTAGTTCAAATCTACTCCCCGCTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1-75)  Length: 75 bp
Type: Met       Anticodon: CAT at 36-38 (36-38) Score: 80.94
Seq: GCCGGGGTAGCTCAGCCtGGTtAGAGTGCCAGACTCATAATCTGGAGGtCGCGAGTTCGAAACTCGCCCCCGGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGGGGTAGCTCAGCCTGGTTAGAGTGCCAG[TTACTTGGTAAACTCTAGCGGTTCTCCAACTAAGGCAAT]ACTCATAATCTGGAGGTCGCGAGTTCGAAACTCGCCCCCGGCA

chr.trna33 (1-74)	Length: 74 bp
Type: Phe	Anticodon: GAA at 35-37 (35-37)	Score: 73.70
Seq: GCCGTGGTAGCTCAGCCtGGGAGAGCACTCGGCTGAAGACCGGGCTGtCGCGCGTTCAAATCCCGCCCGCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.

chr.trna26 (1-74)	Length: 74 bp
Type: Pro	Anticodon: GGG at 35-37 (35-37)	Score: 63.49
Seq: GGGATCGTCGTCTAGCTtGGTATGATACTAGTCTGGGGGACTAGTGGtCGCAGGTTCAAATCCTGCCGGTCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (1-77)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 74.43
Seq: GGGATCGTGGTCTAGCTtGGTATGATTCTGCGTTTGGGACGCAGAGGtCGCGCGTTCAAATCTCGCCGATCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

chr.trna15 (1-82)	Length: 82 bp
Type: Ser	Anticodon: CGA at 33-35 (33-35)	Score: 55.73
Seq: GCCGGAATAGCCAAGTGGTAAGGCGGCCGTCTCGAAAACGGCTACGCGCAAGCGTgCGGGAGTTCGAATCTCTCTTCCGGCG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna32 (1-87)	Length: 87 bp
Type: Ser	Anticodon: GCT at 35-37 (35-37)	Score: 70.89
Seq: GCGGGGATCGCCTAGCCtGGTAGGGCGTGGGATTGCTAATCCCATGTCCGCAAgGACACGGGGGTTCAAATCCCCCTCCCCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>.....<....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (1-101)	Length: 101 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 59.06
Possible intron: 39-52 (39-52)
Seq: GCCGGGGTCGCCTAGCCtGGTAGGGCGCGCGCCTGGAAattgttaaccataaAGCGCGTTCTCGCAAGGGAaCGGGAGTTCAAATCTCCCTCCCGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.....................<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna5 (1-84)	Length: 84 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 65.85
Seq: GCAGAGGTCGCCTAGCTcGGTAGGGCGCGGGCCTTGAGAGCCTGTGTGCGCAAGCATaCGGGGGTTCAAATCCCTCTCTCTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1-74)	Length: 74 bp
Type: Thr	Anticodon: CGT at 35-37 (35-37)	Score: 76.73
Seq: GCCTTGGTAGCTCAGCCtGGTAGAGCGAACGCCTCGTAAGCGTTAGGtCGCGGGTTCAGATCCCGTCCGAGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1-74)	Length: 74 bp
Type: Thr	Anticodon: GGT at 35-37 (35-37)	Score: 69.19
Seq: GCTTCGATAGCTCAGCCtGGTAGAGCGTTACCTTGGTAAGGTAAAGGtCGCGGGTTCGGATCCCGTTCGAAGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1-75)	Length: 75 bp
Type: Thr	Anticodon: TGT at 36-38 (36-38)	Score: 68.33
Seq: GCCAATGTAGCTCAGCCtGGCtAGAGCATTCGCCTTGTAAGCGAAAGGtCATGGGTTCAGATCCCATCATTGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1-127) Length: 127 bp
Type: Trp       Anticodon: CCA at 35-37 (35-37) Score: 67.18
Possible intron: 39-91 (39-91)
Seq: GGGGTCGTAGCCTAGCCtGGTAGGGCGACGGGCTCCAGaggtaaactaagctaaactgactcacggatgatgtaagtttggagctgtagtgACCCGTAGGtCGTCGGTTCGATTCCGATCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>............................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGGGTCGTAGCCTAGCCTGGTAGGGCGAC[AGTGTCTACGAAAAAGATCACCGCTAA]GGGCTCCAGAGGTAAACTAAGCTAAACTGACTCACGGATGATGTAAGTTTGGAGCTGTAGTGACCCGTAGGTCGTCGGTTCGATTCCGATCGGCCCCA

chr.trna35 (1-127)	Length: 127 bp
Type: Tyr	Anticodon: GTA at 35-37 (35-37)	Score: 57.47
Possible intron: 39-88 (39-88)
Seq: CCCGTGGTAGCTCAGCCtGGTAGAGCTTCCGGCTGTAGttgttggctttagatggctgaccgaataacagcatatcaggcatacagaaACCGGGTTGtCGGTGGTTCAACTCCGCCCCGCGGGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.........................................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1-75)  Length: 75 bp
Type: Val       Anticodon: CAC at 36-38 (36-38) Score: 70.29
Seq: GGACCGGTCGTCTAGTTtGGTtTGGATGACGCACTCACACTGCGTAGGtCGTGGGTTCAAATCCCATCCGGTCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GGACCGGTCGTCTAGTTTGGTTTGGATGACGCACTCACACTGCGTA[AGGGAACAAAATTCTCCGCAAA]GGTCGTGGGTTCAAATCCCATCCGGTCCA

chr.trna27 (1-74)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (35-37)	Score: 60.87
Seq: GGGCCGGTAGTCTAGCTGGTtAGGATACCGCCTCGACACGGCGGTGAtCGTGAGTTCGAATCTCTCTCGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna3 (1-75)	Length: 75 bp
Type: Val	Anticodon: TAC at 36-38 (36-38)	Score: 74.70
Seq: GGGCCCATAGTCCAGGTcGGTtATGACGTCGCCCTTACACGGCGAAGAtCCGGGGTTCAAATCCCCGTGGGCCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.