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tRNAscan-SE Analysis of Nitrosopumilus maritimus SCM1

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 4 188725 188796 View Ala CGC agtagtttag cttttccaga 0 0 70.62 54.02 16.60   chr 6 224909 224982 View Ala GGC ttctgaatat cttttacttt 0 0 62.77 44.50 18.27   chr 30 1363723 1363650 View Ala TGC agtctcgtgt ctctttgctt 0 0 73.24 52.25 20.99     chr 25 1592406 1592498 View Arg CCT tttttttgct ttttgttttt 0 0 55.09 30.88 24.21   chr 13 504317 504391 View Arg GCG caaagttttc cttattgcat 0 0 62.07 44.14 17.93   chr 41 162816 162742 View Arg TCG ttacttgttt ttagattatc 0 0 54.05 32.23 21.82   chr 23 1403611 1403685 View Arg TCT ctaggttttt cttaacaaaa 0 0 65.64 46.82 18.82     chr 34 707158 707082 View Asn GTT caaacatgtt cttatttcta 0 0 64.81 37.42 27.39     chr 7 232880 232957 View Asp GTC ttgaacttgt ttattttcat 0 0 64.16 53.76 10.40     chr 19 1313500 1313571 View Cys GCA ttttcaaaac ttattctaca 0 0 25.47 -0.43 25.90     chr 38 321890 321800 View Gln CTG tctttcaagt ctggaataat 321852 321835 52.48 29.15 23.33   chr 42 81511 81439 View Gln TTG tcgagttaac ttttatctaa 0 0 58.73 33.12 25.61     chr 36 418681 418604 View Glu CTC ttttgattaa ttctgtttaa 0 0 77.67 58.98 18.69   chr 44 255184 255090 View Glu TTC aattttcttg agatttaatt 0 0 73.75 55.59 18.16     chr 43 59676 59603 View Gly CCC gagagcacaa ttataattca 0 0 73.68 54.60 19.08   chr 37 397959 397883 View Gly GCC taggtttgtt tctattgatt 0 0 65.50 41.90 23.60   chr 28 1479706 1479633 View Gly TCC gcattttgtt tatctttgat 0 0 70.32 52.53 17.79     chr 9 270209 270280 View His GTG tttatctgtg ctccttttat 0 0 44.15 24.18 19.97     chr 21 1364392 1364466 View Ile GAT atttgttcgt ttacttttga 0 0 72.57 51.00 21.57     chr 12 454316 454416 View Leu CAA cattctcatt ctaaatttta 454356 454371 50.50 26.83 23.67   chr 1 88221 88305 View Leu CAG aatttccatt tactaattat 0 0 53.62 33.83 19.79   chr 10 281501 281585 View Leu GAG aaatttcttt tacaaacttt 0 0 59.05 50.36 8.69   chr 29 1365987 1365864 View Leu TAA ttaccatttt tacacaacta 1365923 1365909 56.34 38.02 18.32   chr 40 198740 198653 View Leu TAG caagtccgtt caataatttc 0 0 70.70 49.34 21.36     chr 2 171008 171081 View Lys CTT catttttggt ctattatcag 0 0 71.92 55.03 16.89   chr 39 232783 232710 View Lys TTT tttttcgtga ctacttttct 0 0 70.65 50.01 20.64     chr 8 255938 256011 View Met CAT catctgctta ttattttcaa 0 0 60.27 40.25 20.02   chr 24 1430303 1430377 View Met CAT tttctcaatc cttaattttg 0 0 66.66 32.70 33.96   chr 18 1212832 1212945 View Met CAT cttatactat cacacaaatt 0 0 80.94 61.15 19.79     chr 33 754037 753964 View Phe GAA tttttcaagt ctttattatt 0 0 73.70 65.04 8.66     chr 26 1630610 1630537 View Pro GGG tctgagacaa ttacaatttc 0 0 63.49 38.69 24.80   chr 14 537291 537367 View Pro TGG aggatttact ttatcttatt 0 0 74.43 50.60 23.83     chr 15 647814 647895 View Ser CGA taggttaatt tattcataat 0 0 55.73 22.16 33.57   chr 32 1263222 1263136 View Ser GCT ccatctttgt ttaaaactta 0 0 70.89 46.79 24.10   chr 11 366393 366493 View Ser GGA caagacttgt ttattttcta 366431 366444 59.06 40.58 18.48   chr 5 210730 210813 View Ser TGA ataatttttt tttttaattt 0 0 65.85 45.16 20.69     chr 31 1317848 1317775 View Thr CGT ctcctgacgt ctaatttaat 0 0 76.73 60.61 16.12   chr 22 1366079 1366152 View Thr GGT gtgagtttgt tttttcaatt 0 0 69.19 44.27 24.92   chr 17 1079755 1079829 View Thr TGT tttacttcgt ttaaaatttt 0 0 68.33 42.04 26.29     chr 20 1349774 1349927 View Trp CCA tcttgtttgt cgtcctaaaa 1349839 1349891 67.18 53.05 14.13     chr 35 470128 470002 View Tyr GTA ttttttttgt caaacttttg 470090 470041 57.47 39.65 17.82     chr 16 1029515 1029611 View Val CAC taattttgtt cctaccttta 0 0 70.29 53.88 16.41   chr 27 1591588 1591515 View Val GAC gtatttcaat ctttttaatt 0 0 60.87 48.32 12.55   chr 3 177670 177744 View Val TAC gttggtttct tattttcaaa 0 0 74.70 60.02 14.68   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.