GtRNAdb

tRNAscan-SE Analysis of Mycobacterium tuberculosis CDC1551

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGG...........GtCAGGGGTTCGAGTCCCCTTAGCTCCA... Mycobacterium_tuberculosis_CDC1551.trna31-AlaGGC Sc: 82.28 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATGGCGCAGTTGGTAGCGCGACTCGTTCGCATCGAGTAG...........GtCAGGGGTTCGAATCCCCTTAGCTCCACCA Mycobacterium_tuberculosis_CDC1551.trna11-AlaCGC Sc: 92.08 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCTTAGCTCAGTTGGTAGAGCACTGCCTTTGCAAGGCAGGG...........GtCAGGGGTTCGAGTCCCCTAGGCTCCACAA Mycobacterium_tuberculosis_CDC1551.trna2-AlaTGC Sc: 91.66

Arg tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAAC.GGAtA.GAGCATCTGACTACGGATCAGAAG...........GtTGGGAGTTCGAATCTCTTCGGGCGCG... Mycobacterium_tuberculosis_CDC1551.trna27-ArgACG Sc: 74.09 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCGTAGCTCAGG.GGAtA.GAGCGTCTGCCTCCGGAGCAGAAG...........GcCGCAGGTTCGAATCCTGCCGGGGGCACAA Mycobacterium_tuberculosis_CDC1551.trna40-ArgCCG Sc: 78.92 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCTCGTAGCTCAGG.GGAtA.GAGCACGGCTCTCCTAAAGCCGGT...........GtCGCAGGTTCGAATCCTGCCGGGGGCA... Mycobacterium_tuberculosis_CDC1551.trna42-ArgCCT Sc: 74.23 >>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCCGTAGCTCAGGTGGAtA.GAGCAAGGGCCTTCTAATCCCTAG...........GtCGCACGTTCGAGTCGTGCCGGGGGCA... Mycobacterium_tuberculosis_CDC1551.trna17-ArgTCT Sc: 69.26

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCTGTAGCTCAATTGGCAGAGCGTTCGGCTGTTAACCGAAGG...........GtTGGAGGTTCGAGTCCTCCCGGGGGAG... Mycobacterium_tuberculosis_CDC1551.trna36-AsnGTT Sc: 78.73

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCCTGTGGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCGAGTCCCGTCAGGGTCGCCA Mycobacterium_tuberculosis_CDC1551.trna9-AspGTC Sc: 95.56

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGTGGAGTGGCCGAGTGGTG.AGGCAACGGCCTGCAAAGCCGTGC...........ACACGGGTTCGATTCCCGTCTCCACCTCCA Mycobacterium_tuberculosis_CDC1551.trna21-CysGCA Sc: 76.31

Gln tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... TGGGGTATGGTGTAATTGGCAACACAGCTGATTCTGGTTCAGCC............AtTCTAGGTTCGAGTCCTGG.TACCCCAG... Mycobacterium_tuberculosis_CDC1551.trna32-GlnCTG Sc: 55.97 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... TCCGTCGTGGTGTAATCGGCAGCACCTCTGATTTTGGTTCAGATA...........G.TTCAGGTTCGAGTCCTGG.CGACGGAG... Mycobacterium_tuberculosis_CDC1551.trna41-GlnTTG Sc: 49.46

Glu tRNAs

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCCCGTCGTCTAGC.GGCctA.GGACGCCGCCCTCTCACGGCGGTA...........GCGTGGGTTCGAATCCCATCGGGGCTACAA Mycobacterium_tuberculosis_CDC1551.trna33-GluCTC Sc: 62.17 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCCCCTTCGTCTAGACGGCctA.GGACGCCGCCCTTTCAAGGCGGTA...........ACGCGGGTTCGAATCCCGTAGGGGGTACCT Mycobacterium_tuberculosis_CDC1551.trna8-GluTTC Sc: 59.25

Gly tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGATGTAGCGCAGTTGGTA.GCGCATCACCTTGCCAAGGTGAGG...........GtCGCGGGTTCGAATCCCGTCATCCGCTCGA Mycobacterium_tuberculosis_CDC1551.trna20-GlyGCC Sc: 89.46 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGATGTAGTTCAAT.GGCA.GAACATCAGCTTCCCAAGCTGAAT...........A.CGCGGGTTCGATTCCCGTCATCGGCTCCG Mycobacterium_tuberculosis_CDC1551.trna45-GlyCCC Sc: 73.32 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGTAGCTCAAT.GGTA.GAGCCCTAGTCTTCCAAACTAGCG...........A.CGCGGGTTCGATTCCCGTCGCCCGCT... Mycobacterium_tuberculosis_CDC1551.trna16-GlyTCC Sc: 74.56

His tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGAGTGTAGTTCAGTTGGTAGAGCACCAGGTTGTGATCCTGGGT...........GtCGCGGGTTCGAGTCCCGTCACTCACCCCA Mycobacterium_tuberculosis_CDC1551.trna18-HisGTG Sc: 82.48

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGGCGGTtAGAGCGCTTCGCTGATAACGAAGAG...........GtCGGAGGTTCGAGTCCTCCTAGGCCCACGA Mycobacterium_tuberculosis_CDC1551.trna1-IleGAT Sc: 88.31

Leu tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>.........<<<<....>>>>>.......<<<<<.<<<<<<<.... GTCCGAGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGTGCCCTACTAA.....TGGGCG.TGGGGGTTCAAGTCCCCC.CTCGGACACAA Mycobacterium_tuberculosis_CDC1551.trna15-LeuGAG Sc: 60.27 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<.... GGGCGAGTGGCGGAAT.GGCaG.ACGCGCTGGCTTCAGGTGCCAGT.GTCC.TTCG......GGACG.TGGGGGTTCAAGTCCCCC.TTCGCCCACCG Mycobacterium_tuberculosis_CDC1551.trna3-LeuCAG Sc: 64.37 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGGCGTGATGAAATTGGCaA.ACATGCCGGTTTTAGGTGCCGGTGCTC..GAAA.......GAGTtTGAGGGTTCGAGTCCCTC.CGCCCGCA... Mycobacterium_tuberculosis_CDC1551.trna13-LeuTAG Sc: 63.59 >>>>>>>..>>>............<<<.>>>>.........<<<<........................>>>>>.......<<<<<.<<<<<<<.... GCCCTCGTATCCCAACTGGCaG.AGGAAACGGACTCAAAACCCGTCC...................AgTGTGGGTTCGAATCCCAC.CGAGGGCACCA Mycobacterium_tuberculosis_CDC1551.trna39-LeuCAA Sc: 56.45 >>>>>>>..>>>............<<<.>>>>>.......<<<<<........................>>>>>.......<<<<<.<<<<<<<.... GCCCCCATAGCCCAATTGGCaG.AGGCAGCGGACTTAAAATCCGTCA...................AgTGTCGGTTCGAGTCCGAC.TGGGGGCA... Mycobacterium_tuberculosis_CDC1551.trna12-LeuTAA Sc: 63.13

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCGTTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCCGGGGTTCGAAACCCTGACGGCGCA... Mycobacterium_tuberculosis_CDC1551.trna19-LysCTT Sc: 83.50 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCCCCTATAGCTCAGTTGGTAGAGCTACGGACTTTTAATCCGCAG...........GtCCCAGGTTCGAGTCCTGGTGGGGGCACAA Mycobacterium_tuberculosis_CDC1551.trna43-LysTTT Sc: 82.20

Met tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCGGTAGCTCAGTT.GGTtAGAGCCGCGGACTCATAATCCGTTG...........GtCGCGGGTTCGAGCCCCGCCCGCCCCA... Mycobacterium_tuberculosis_CDC1551.trna37-MetCAT Sc: 90.06 GGCGATGTAGCTCAGTC.GGTtAGAGCGAACGACTCATAATCGTTAG...........GtCGCCGGTTCGAGTCCGGCCATCGCTACAA Mycobacterium_tuberculosis_CDC1551.trna6-MetCAT Sc: 89.68 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCTcGGT.AGCTCGCTGGGCTCATAACCCAGAG...........GtCGCAGGTTCGAATCCTGTCCCCGCTACCA Mycobacterium_tuberculosis_CDC1551.trna30-MetCAT Sc: 88.77

Phe tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCAGGTAGCTCAGTCGGTaTGAGCGTCCGCCTGAAAAGCGGAAG...........GtCGGCGGTTCGATCCCGCCCCTGGCCACCA Mycobacterium_tuberculosis_CDC1551.trna10-PheGAA Sc: 90.33

Pro tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGCTGTGGCGCAGTTtGGTAGCGCACTTGACTGGGGGTCAAGTG...........GtCGCAGGTTCAAATCCTGTCAGCCCGA... Mycobacterium_tuberculosis_CDC1551.trna14-ProGGG Sc: 79.83 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGTGTGGCGCAGCTtGGTAGCGCGCTTCGTTCGGGACGAAGAG...........GcCGTGGGTTCAAATCCCGCCACCCCGACCG Mycobacterium_tuberculosis_CDC1551.trna23-ProCGG Sc: 76.17 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGTGTAGCGCAGCTtGGTAGCGCATCCGCTTTGGGAGCGGAAG...........GcCGCAGGTTCAAATCCTGTCACCCCGACCA Mycobacterium_tuberculosis_CDC1551.trna35-ProTGG Sc: 89.79

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>.>..........<.<<...>>>>>.......<<<<<..<<<<<<<.... GGAGGATTCGCCTAGTGGCctA.TGGCGCTCGCCTGGAACGCGGGTTGGGT...TAAC...AGCCCtCGCGGGTTCAAATCCCGC..ATCCTCCGCCA Mycobacterium_tuberculosis_CDC1551.trna24-SerGGA Sc: 65.42 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGTGGCGTGTCCGAGCGGCctA.AGGAGCACGCCTCGAAAGCGTGT.GACGGC.TAAC.ACCGTC..CGAGGGTTCAAATCCCTC..CGCCACCGCCA Mycobacterium_tuberculosis_CDC1551.trna28-SerCGA Sc: 68.38 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGTGGCGTGGCAGAGCGGCctA.ATGCACTCGCCTTGAAAGCGAGA.GACGGC.TAAC.ACCGTC..CGGGGGTTCAAATCCCTC..CGCCACCG... Mycobacterium_tuberculosis_CDC1551.trna25-SerTGA Sc: 65.11 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGGCGTGCCAGAGCGGCcgA.ATGGGGCTCACTGCTAATGAGTT.GTCCCCCTTCAAGGGGAC..CGGAGGTTCAAATCCTCT..CGCCTCCG... Mycobacterium_tuberculosis_CDC1551.trna26-SerGCT Sc: 56.66

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCTTAGCTCAGTCGGCA.GAGCGTTTCCATGGTAAGGAAAAG...........GtCAACGGTTCGATTCCGTTAGGGGGCT... Mycobacterium_tuberculosis_CDC1551.trna5-ThrGGT Sc: 77.85 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCCTTAGCTCAGTCGGTA.GAGCGATTCACTCGTAATGAATAG...........GtCAGGAGTTCGATTCTCCTAGGCGGCTCCA Mycobacterium_tuberculosis_CDC1551.trna29-ThrCGT Sc: 91.14 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCCTTAGCTCAGT.GGTA.GAGCACTCGCCTTGTAAGCGAGCG...........GtCGTCAGTTCAATCCTGACAGGGGGCTCAA Mycobacterium_tuberculosis_CDC1551.trna44-ThrTGT Sc: 77.79

Trp tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGCGTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAG...........GtTGCAGGTTCAAGTCCTGTCGCCCCTG... Mycobacterium_tuberculosis_CDC1551.trna7-TrpCCA Sc: 79.38

Tyr tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...>...........<...>>>>>.......<<<<<<<<<<<<.... GGCAGGTTGCCCGAGCGGCcaA.TGGGAGCGGACTGTAAATCCGTCGCGAA.......AGCTACGCAGGTTCGAATCCTGCACCTGCCACCA Mycobacterium_tuberculosis_CDC1551.trna4-TyrGTA Sc: 60.56

Val tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCGATTAGCTCAGCGGGA.GAGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCAATCCCAGTATCGCGCACCA Mycobacterium_tuberculosis_CDC1551.trna22-ValGAC Sc: 87.89 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCCCGTGGCTCAGTGGGA.GAGCGTCCGCTTCACACGCGGAAG...........GtCGCTGGTTCGATCCCAGCCGGGACCACTA Mycobacterium_tuberculosis_CDC1551.trna34-ValCAC Sc: 80.53 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCGTAGCTCAGCGGTA.GAGCTCTGGTTTTACACACCAGCG...........GtCGGCGGTTCGATCCCGTCCGCGCCCACCG Mycobacterium_tuberculosis_CDC1551.trna38-ValTAC Sc: 79.93

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.