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tRNAscan-SE Analysis of Medicago truncatula (March 2009 Version 3.0)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr0 1 4319197 4319271 Pseudo ATT aaatagtctc tattcacctt 0 0 23.37 29.74 -6.37 Eufind chr0 2 5119307 5119375 Asp GTC ttaacatcaa gtgatatttt 0 0 30.19 20.52 9.67 Eufind chr0 3 8519098 8519169 Glu TTC tctacaattt atttttgtat 0 0 52.06 39.28 12.78 Both chr0 4 8535927 8535998 Glu TTC tctacaattt atttttgtat 0 0 52.06 39.28 12.78 Both chr0 5 11825426 11825499 Val AAC gcagcaagat tgttttgttt 0 0 77.22 55.27 21.95 Both chr0 6 17847814 17847894 Tyr ATA tttttttttt ataattatac 17847850 17847856 22.21 11.99 10.22 Eufind chr0 7 18483196 18483268 Val TAC aattacaaga ttaattttct 0 0 77.19 42.62 34.57 Both chr0 8 19460608 19460680 Pseudo ATT gactatcctc cttctccata 0 0 21.20 30.35 -9.15 Eufind chr0 9 19804331 19804403 Pseudo TTA agacatcctc cttctccaca 0 0 28.89 30.08 -1.19 Eufind chr0 10 20220733 20220804 Asn ATT tgagatccct acttctccac 0 0 22.10 15.93 6.17 Eufind chr0 11 20350707 20350779 Ala CGC taaaatcaaa taattttcat 0 0 65.14 41.26 23.88 Both chr0 12 20369771 20369855 Met CAT aaacatcatt acaatatttt 20369809 20369819 60.65 40.55 20.10 Both chr0 13 20369966 20370037 Asp GTC ggatcaacaa taaatcatat 0 0 69.46 51.11 18.35 Both chr0 14 23909702 23909775 Ile TAT atcatcagct tgaattttgg 0 0 85.40 69.82 15.58 Both chr0 15 23932932 23933004 Phe GAA tttttcatct taattatttt 0 0 77.43 54.21 23.22 Both chr0 16 26058527 26058599 Pseudo ATT agtttgtcct cttattcacc 0 0 22.74 29.32 -6.58 Eufind chr0 17 26233677 26233748 Gly TCC tcaacaagat ttcacaacat 0 0 74.33 49.53 24.80 Both chr0 18 27240612 27240683 Asp GTC ttaatatcaa ttttttttaa 0 0 68.28 52.71 15.57 Both chr0 19 29731164 29731245 Ser AGA ttgcaacaat ctttttgatg 0 0 75.58 48.23 27.35 Eufind chr0 20 29739641 29739714 Val AAC taatacaaag tttcctttct 0 0 76.88 51.16 25.72 Both chr0 21 29757377 29757450 Val AAC tatcacaaat tttccatttt 0 0 76.88 51.16 25.72 Both chr0 22 27240812 27240739 Ile AAT gaatgttcaa attttaataa 0 0 86.52 62.10 24.42 Both chr0 23 24130675 24130603 Val TAC ttgcctacaa atatataatt 0 0 41.95 32.99 8.96 Eufind chr0 24 20523826 20523746 Leu CAA catggaagat taatattgag 0 0 51.21 24.78 26.43 Both chr0 25 18982786 18982713 Val AAC aacatcaaat gttaattttt 0 0 77.22 55.27 21.95 Both chr0 26 16815194 16815122 Pseudo TTA cacgatcccc cttctccata 0 0 25.16 32.42 -7.26 Eufind chr0 27 14483448 14483377 Lys TTT aaccaattat ataatgtaat 0 0 82.79 61.53 21.26 Both chr0 28 11826987 11826908 Leu TAG tcaacaaaaa attttactat 0 0 68.72 40.52 28.20 Both chr0 29 6731101 6731027 Pseudo ??? aagtgttcac aaaaaaaatt 0 0 21.96 23.15 -1.19 Eufind chr0 30 1535892 1535823 Asn ATT atttcgtccc tcatttatta 0 0 22.72 17.08 5.64 Eufind   chr1 1 77511 77584 Asp GTC ttttattcct acctaggatc 0 0 60.73 43.27 17.46 Both chr1 2 99563 99636 His GTG gggggtaggg catcaataaa 0 0 50.71 32.92 17.79 Both chr1 3 205980 206052 Lys TTT tatatatttg aacaaaccta 0 0 77.00 59.95 17.05 Both chr1 4 229456 229527 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both chr1 5 233346 233417 Gln TTG aaaagccgta attatgaaca 0 0 51.09 21.78 29.31 Both chr1 6 241715 241788 Trp CCA tgaaaataaa attccattct 0 0 67.94 39.21 28.73 Both chr1 7 254927 255000 Phe GAA taggaaagtg ggctttgggt 0 0 60.13 43.60 16.53 Both chr1 8 255263 255337 Pro TGG gggggtgaga tgtgatgggc 0 0 54.34 25.42 28.92 Both chr1 9 314559 314630 Asn GTT agtccgttct aattttgagt 0 0 81.75 61.19 20.56 Both chr1 10 315005 315087 Tyr GTA gcccgggaag cttgtttgtt 0 0 56.47 35.03 21.44 Both chr1 11 503750 503823 Met CAT agatccgtag gcaccccctt 0 0 56.02 28.23 27.79 Both chr1 12 505672 505745 Phe GAA taggaaagtg ggctttgggt 0 0 60.13 43.60 16.53 Both chr1 13 506008 506082 Pro TGG gggggtgaga tgtgatgggc 0 0 54.34 25.42 28.92 Both chr1 14 746096 746181 Tyr GTA gtatcatcat tttttgtttt 746133 746145 69.21 40.26 28.95 Both chr1 15 1515317 1515397 Leu AAG aaataaaatt tttttttatt 0 0 58.62 35.67 22.95 Both chr1 16 2418403 2418475 Pseudo ATT ttacatttcc cttctccaca 0 0 23.85 31.10 -7.25 Eufind chr1 17 4996067 4996138 Pro TGG aacataaaca ttttttgttt 0 0 71.37 41.38 29.99 Both chr1 18 5664651 5664722 Asp GTC ttgcaaatca atttttttct 0 0 69.46 51.11 18.35 Both chr1 19 5820656 5820728 Arg CCT aaacaaacaa tttcagtaaa 0 0 72.63 53.36 19.27 Both chr1 20 8719709 8719793 Met CAT atagcatcaa ataactattt 8719747 8719757 61.30 41.19 20.11 Both chr1 21 12711168 12711239 Gln TTG aaatacaata acttttttgc 0 0 61.96 51.52 10.44 Both chr1 22 13272752 13272823 Cys GCA atacaacatg ccctcctttt 0 0 78.18 58.76 19.42 Both chr1 23 13281181 13281252 Cys GCA cattaacagt ttttgaaaat 0 0 78.18 58.76 19.42 Both chr1 24 14751015 14751087 Arg TCT caaacaagaa aacttaactt 0 0 67.97 52.45 15.52 Both chr1 25 15238917 15238989 Pseudo AAA gtagaagtcc aaaaaataaa 0 0 20.53 1.04 19.49 Eufind chr1 26 16313671 16313754 Met CAT taagcataaa ttatcttttt 16313709 16313718 54.76 34.65 20.11 Both chr1 27 17924032 17924104 Pseudo ??? gataatcccc cttctccaca 0 0 20.74 33.65 -12.91 Eufind chr1 28 18422576 18422649 Asn GTT aacatgagaa ttttttaatt 0 0 71.54 49.83 21.71 Both chr1 29 18422956 18423029 Asn GTT aacatgagaa ttttctaatt 0 0 62.49 47.24 15.25 Both chr1 30 18424210 18424283 Asn GTT aacatgagaa ttttctaaat 0 0 77.00 50.89 26.11 Both chr1 31 20768436 20768509 Thr AGT tcaacaacaa gaaattttta 0 0 74.28 46.95 27.33 Both chr1 32 21214523 21214590 Pseudo ATT aatatatcca ccccacttat 0 0 20.23 24.99 -4.76 Eufind chr1 33 23264186 23264257 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both chr1 34 23268073 23268144 Gln TTG aaaagccgta attatgaaca 0 0 51.09 21.78 29.31 Both chr1 35 25487948 25488019 Asp GTC tcttaacaag tcttttttct 0 0 66.54 50.97 15.57 Both chr1 36 25490666 25490737 Pseudo GTC tgtcaacaag tttctttttt 0 0 48.41 44.42 3.99 Both chr1 37 25557245 25557318 Ile AAT acttgtcatc attctatatc 0 0 64.53 52.12 12.41 Both chr1 38 26568489 26568566 Undet ??? ttatccaatg taattcactt 0 0 39.70 17.44 22.26 Eufind chr1 39 26618656 26618728 Undet ??? tagacaattt attcatttca 0 0 61.17 34.15 27.02 Eufind chr1 40 26780733 26780804 Lys TTT tagacaattt attcatttca 0 0 70.15 43.66 26.49 Both chr1 41 31588644 31588574 Pseudo AAT tgttgtcccc aaagaaaatc 0 0 20.08 21.12 -1.04 Eufind chr1 42 28820180 28820107 Val AAC atgtcacaac attcttcaga 0 0 77.22 55.27 21.95 Both chr1 43 28126403 28126332 Cys GCA tcaacatgtg gttatatgga 0 0 78.18 58.76 19.42 Both chr1 44 26548956 26548885 Thr TGT tatacaactt attcatttca 0 0 79.47 53.24 26.23 Both chr1 45 22806902 22806831 Pseudo TTA aattatcccc cttctccaca 0 0 21.92 36.86 -14.94 Eufind chr1 46 21999487 21999415 Phe GAA ttatcaacaa taattatttt 0 0 77.43 54.21 23.22 Both chr1 47 21845955 21845883 Pseudo ??? ctacgtcccc aaagaaaaaa 0 0 22.86 28.48 -5.62 Eufind chr1 48 21222991 21222918 Ile TAT attaatgagt ttccatttta 0 0 85.40 69.82 15.58 Both chr1 49 20831662 20831590 Ala AGC actaacacat ctttttgatt 0 0 68.12 43.78 24.34 Both chr1 50 20541755 20541684 Glu TTC ctaacatcaa ttttttttat 0 0 72.67 50.77 21.90 Both chr1 51 20366799 20366727 Val TAC tatcatcaaa aaatatcatt 0 0 76.93 46.57 30.36 Both chr1 52 20090349 20090268 Ser TGA caataaacaa tttttgttat 0 0 80.82 48.39 32.43 Both chr1 53 18364208 18364135 Lys CTT aacatgagaa ttttctaata 0 0 46.78 35.65 11.13 Eufind chr1 54 18048611 18048539 Arg TCT atatcacaag ctgcttttta 0 0 70.97 53.84 17.13 Both chr1 55 16999205 16999133 Lys CTT aaaacaataa ttttttattt 0 0 84.38 62.40 21.98 Both chr1 56 16535618 16535545 Ile AAT tgaggaatat ttttttttaa 0 0 78.92 61.49 17.43 Both chr1 57 13881708 13881635 Pseudo AAT ttctgtcctt aaaaaaaata 0 0 25.79 35.58 -9.79 Eufind chr1 58 13282038 13281967 Cys GCA taccaacatt ttttgaaatt 0 0 76.74 57.32 19.42 Both chr1 59 13156616 13156543 Pseudo ACA gaacaggtcg caaccggcta 0 0 25.10 25.58 -0.48 Eufind chr1 60 12616817 12616746 Gln TTG aaatacaata acttttttgc 0 0 61.96 51.52 10.44 Both chr1 61 8711096 8711025 Gln TTG aacatgtggt cctnnnnnnn 0 0 74.09 57.50 16.59 Both chr1 62 7585512 7585429 Leu CAA gtaacaacaa tttctttgtt 0 0 70.52 44.98 25.54 Both chr1 63 5980086 5980015 Asp GTC ttgcaaatta atttttttct 0 0 58.72 44.00 14.72 Both chr1 64 5218961 5218882 Leu TAG gaacgtcaaa atttttttgt 0 0 68.65 40.39 28.26 Both chr1 65 5173441 5173368 Ile AAT aagctaacat tttattttca 0 0 69.78 47.63 22.15 Eufind chr1 66 5145260 5145189 Cys GCA aacacaacag tttttaatta 0 0 78.18 58.76 19.42 Both chr1 67 5045105 5045032 Thr AGT ttaacaagca aattttcatt 0 0 75.17 48.55 26.62 Both chr1 68 4684210 4684139 Met CAT aaataatgaa tatatatttt 0 0 67.87 40.24 27.63 Both chr1 69 3980243 3980172 Asp GTC caatcaatag tttttttata 0 0 69.46 51.11 18.35 Both chr1 70 2801518 2801446 Pseudo ??? ttctatcccc tttctctaca 0 0 21.55 28.69 -7.14 Eufind chr1 71 2645491 2645419 Arg CCT agaacaacaa tttcatgttt 0 0 72.63 53.36 19.27 Both chr1 72 1657316 1657244 Arg ACG aatcaaaaag tttcttaatt 0 0 72.21 49.55 22.66 Both chr1 73 1493983 1493903 Leu AAG gtacaaaata atttttaaat 0 0 66.33 40.11 26.22 Both chr1 74 949165 949094 Pseudo ATT aatatgtccc acttattcac 0 0 25.09 26.62 -1.53 Eufind chr1 75 806263 806191 Lys TTT aaaacactaa ttttttagat 0 0 88.26 63.86 24.40 Both chr1 76 493011 492940 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both chr1 77 489120 489049 Gln TTG aaaagccgta attatgaaca 0 0 51.09 21.78 29.31 Both chr1 78 480752 480679 Trp CCA tgaaaataaa attccattct 0 0 67.94 39.21 28.73 Both chr1 79 325803 325730 Met CAT agggggaaga tgtcttgatt 0 0 64.93 45.51 19.42 Both chr1 80 284395 284324 Gln TTG aaaagccgta attatgaaca 0 0 51.09 21.78 29.31 Both chr1 81 276026 275953 Trp CCA tgaaaataaa attccattct 0 0 62.84 34.11 28.73 Both chr1 82 265720 265648 Lys TTT tatatatttg aacaaaccta 0 0 77.00 59.95 17.05 Both chr1 83 218692 218619 Met CAT agatccgtag gcaccccctt 0 0 56.02 28.23 27.79 Both chr1 84 216770 216697 Phe GAA taggaaagtg ggctttgggt 0 0 60.13 43.60 16.53 Both chr1 85 216434 216360 Pro TGG gggggtgaga tgtgatgggc 0 0 54.34 25.42 28.92 Both chr1 86 169663 169592 Glu TTC tggctttttg gctactcttt 0 0 60.38 39.55 20.83 Both chr1 87 168714 168642 Met CAT actcagcttg aggccgaaag 0 0 59.47 28.55 30.92 Both chr1 88 153502 153429 His GTG gggggtaggg catcaataaa 0 0 50.71 32.92 17.79 Both chr1 89 138612 138541 Gly GCC accgtagctg cttggcttcg 0 0 59.63 40.09 19.54 Both chr1 90 134716 134645 Gln TTG aaaagccgta attatgaaca 0 0 51.09 21.78 29.31 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr2 1 661886 661959 Arg TCG taacatcaag ctcgcataat 0 0 81.86 60.33 21.53 Both chr2 2 2083928 2083999 His GTG ttgacatgaa cacttctctt 0 0 62.38 35.43 26.95 Both chr2 3 2567531 2567604 Val AAC aacaacaaat tcatcttttt 0 0 77.22 55.27 21.95 Both chr2 4 3622146 3622218 Ala TGC ttaacaacct tccatatttt 0 0 59.40 35.06 24.34 Both chr2 5 3748607 3748678 Gln CTG aagcagcagt tttttctttt 0 0 69.91 50.33 19.58 Both chr2 6 4020830 4020902 Pseudo ATT aatgtgtttc cttctccaca 0 0 21.30 20.49 0.81 Eufind chr2 7 4428838 4428908 Gly CCC ttaacattaa ttttcttttt 0 0 56.48 29.32 27.16 Both chr2 8 4740994 4741089 Tyr GTA aaatcaacaa ttttttcttt 4741031 4741053 76.74 49.01 27.73 Both chr2 9 5028822 5028895 Ile TAT ttacaaacat tgtttatatg 0 0 85.40 69.82 15.58 Both chr2 10 5613632 5613705 Ile AAT aatatcaaat ctttttttca 0 0 86.52 62.10 24.42 Both chr2 11 5613788 5613860 Lys CTT ttaccaataa atttgttttt 0 0 84.38 62.40 21.98 Both chr2 12 6472537 6472609 Phe GAA agtgcaagtt tttaacaatt 0 0 77.43 54.21 23.22 Both chr2 13 6775626 6775697 Pro TGG tatcacaaaa ttttattttg 0 0 71.37 41.38 29.99 Both chr2 14 7065382 7065453 Pseudo ATT gtcccgtccc aattattcac 0 0 22.81 24.75 -1.94 Eufind chr2 15 7163166 7163237 Pro TGG tatcacaaaa aatttttttt 0 0 71.37 41.38 29.99 Both chr2 16 7677288 7677360 Ala AGC tatcaacaat tttttttatt 0 0 68.12 43.78 24.34 Both chr2 17 8514677 8514749 Phe GAA taacatcgtt atttcacttt 0 0 77.43 54.21 23.22 Both chr2 18 8995183 8995256 Asn GTT ccaacaagaa agttcatatt 0 0 80.56 54.45 26.11 Both chr2 19 10383970 10384042 Pseudo ??? attattcttc aaagaaagat 0 0 25.44 22.88 2.56 Eufind chr2 20 10426615 10426686 Trp CCA ggtcaataat ttaccctttt 0 0 76.38 53.43 22.95 Both chr2 21 11317557 11317631 Undet ??? catcatcctc tctctacaat 0 0 23.37 17.75 5.62 Eufind chr2 22 16957872 16957944 Ala TGC taaacatcat aattgagttt 0 0 69.90 45.16 24.74 Both chr2 23 21893367 21893440 Thr AGT tttaacaaaa aagtaatttt 0 0 74.28 46.95 27.33 Both chr2 24 22754067 22754137 Gly CCC acaacaagta aaatacctat 0 0 68.50 35.50 33.00 Both chr2 25 24061029 24061116 Tyr GTA gtttcaacaa tttttttgtc 24061066 24061080 74.15 44.78 29.37 Both chr2 26 24107021 24107093 Ala AGC atcaataaat taattttttt 0 0 68.12 43.78 24.34 Both chr2 27 24509138 24509211 Asn GTT aaagcaagat ttttctcttt 0 0 80.56 54.45 26.11 Both chr2 28 24878933 24879005 Ala AGC tatcctatat taattctctt 0 0 68.12 43.78 24.34 Both chr2 29 24900047 24900119 Ala AGC ttcacaatat taattatcat 0 0 68.12 43.78 24.34 Both chr2 30 24916275 24916347 Ala AGC tcaaatatat acttaagtat 0 0 66.65 42.36 24.29 Both chr2 31 26085771 26085843 Pseudo ATT gcaatgtccc ccgtcctagc 0 0 22.63 23.92 -1.29 Eufind chr2 32 27285138 27285209 Gly TCC atttcaacaa ttttgctgct 0 0 74.33 49.53 24.80 Both chr2 33 28397899 28397972 Asn GTT gtatcaacaa tctcttaatt 0 0 80.56 54.45 26.11 Both chr2 34 28751512 28751584 Ala TGC taaataatat aattatttta 0 0 62.75 43.76 18.99 Both chr2 35 29362565 29362637 Arg TCT aacatcagga ctcaattttt 0 0 73.60 54.76 18.84 Both chr2 36 29458502 29458583 Ser CGA gtcaagcaac gctctttttg 0 0 81.28 49.43 31.85 Both chr2 37 29625402 29625473 Met CAT ataacaagaa aaagtcaact 0 0 67.87 40.24 27.63 Both chr2 38 29986856 29986927 Asp GTC acatcaaaca attttttttt 0 0 60.38 45.79 14.59 Both chr2 39 30849706 30849777 Met CAT aaaataacaa aattcttcct 0 0 67.87 40.24 27.63 Both chr2 40 32080116 32080188 Ala TGC tattcatcat aaatgttatt 0 0 69.90 45.16 24.74 Both chr2 41 29891178 29891097 Ser AGA tagcacaaca tctttttttt 0 0 84.12 51.69 32.43 Both chr2 42 29887602 29887521 Ser AGA taacaaaaga cctttttctt 0 0 84.12 51.69 32.43 Both chr2 43 29707309 29707237 Lys CTT aaaaaaagta tacactattt 0 0 84.38 62.40 21.98 Both chr2 44 29391431 29391358 Asn GTT atggcaacaa ttttctattt 0 0 80.56 54.45 26.11 Both chr2 45 29095394 29095321 Ile AAT aaagcatcaa cttttttact 0 0 86.52 62.10 24.42 Both chr2 46 28124375 28124304 Thr TGT tcaacaataa aatttctttt 0 0 81.57 55.69 25.88 Both chr2 47 28114394 28114313 Ser GCT ataacaaatc aatttttttc 0 0 77.62 43.68 33.94 Both chr2 48 27468672 27468601 Gly TCC cctgtaacaa taatctttta 0 0 67.41 42.62 24.79 Both chr2 49 26139366 26139295 Pro AGG acaacaactt ttttgttttt 0 0 71.75 43.88 27.87 Both chr2 50 24329283 24329210 Asn GTT taagcaacaa tttttgtctt 0 0 80.56 54.45 26.11 Both chr2 51 23462255 23462183 Pseudo ??? atgtatcccc cttctccaca 0 0 20.74 33.65 -12.91 Eufind chr2 52 22431573 22431501 Ala AGC ctttcaacat tttttgttct 0 0 68.12 43.78 24.34 Both chr2 53 21828767 21828688 Pseudo TTA tttttttttt ataataatgt 0 0 20.77 25.26 -4.49 Eufind chr2 54 21788994 21788922 Phe GAA taacaacgtt atttcatttt 0 0 77.43 54.21 23.22 Both chr2 55 21291947 21291875 Pseudo ATT tttggttccc cttttctaca 0 0 21.86 26.21 -4.35 Eufind chr2 56 21164347 21164275 Pseudo ATT tttggttccc cttttctaca 0 0 21.86 26.21 -4.35 Eufind chr2 57 20946970 20946897 Asn GTT taatatgtct atttttaatc 0 0 80.56 54.45 26.11 Both chr2 58 19145348 19145268 Leu AAG gaagcatcaa tgttttcttt 0 0 67.01 36.98 30.03 Both chr2 59 14494405 14494333 Pseudo ATA agctgtcctc caaaaaaaat 0 0 20.98 25.03 -4.05 Eufind chr2 60 13552812 13552737 Pseudo GTT ttgcaaagct tttactttat 0 0 22.14 7.95 14.19 Eufind chr2 61 10959780 10959709 Pro TGG acatataatt aaaattttaa 0 0 71.37 41.38 29.99 Both chr2 62 10712978 10712907 His GTG tatcacaaat cattcttttt 0 0 63.70 36.75 26.95 Both chr2 63 8371281 8371208 Thr AGT ttaacaaaca atttttcttt 0 0 74.28 46.95 27.33 Both chr2 64 6780254 6780183 Pro AGG taattaaaat tttttttaag 0 0 71.75 43.88 27.87 Both chr2 65 5135852 5135779 Thr AGT ggatataaaa aaaagtaaat 0 0 74.28 46.95 27.33 Both chr2 66 3874208 3874136 Val TAC taaacaacaa ttactttttg 0 0 76.93 46.57 30.36 Both chr2 67 3140174 3140102 Ala TGC ttaacaacct tccatatttt 0 0 59.40 35.06 24.34 Both chr2 68 2866232 2866161 Pseudo ATA actatccctt aaaaaaaagt 0 0 26.01 26.44 -0.43 Eufind chr2 69 2293253 2293179 Pseudo ATT taactgtccc tattcacctt 0 0 22.08 28.63 -6.55 Eufind chr2 70 1390628 1390555 Val CAC taacaacaag atctttttat 0 0 78.73 54.53 24.20 Both chr2 71 795986 795915 Gly TCC gtctcaagta gcatttttaa 0 0 71.66 46.87 24.79 Both chr2 72 728605 728533 Pseudo ATT gccctgtccc cttattcacc 0 0 24.56 42.37 -17.81 Eufind chr2 73 578141 578069 Pseudo ATT gccctgtccc cttattcacc 0 0 24.56 42.37 -17.81 Eufind chr2 74 486752 486679 Arg TCG taacatcaag ctcgcataat 0 0 81.86 60.33 21.53 Both   chr3 1 174663 174733 Gly GCC gaacaacaaa aatttgaggg 0 0 71.56 51.49 20.07 Both chr3 2 178413 178483 Gly GCC gaataacaaa attttgaggg 0 0 71.56 51.49 20.07 Both chr3 3 180922 180992 Gly GCC caacaacaaa atattggggc 0 0 71.56 51.49 20.07 Both chr3 4 185963 186033 Gly GCC gaacaacaaa tattcgaggg 0 0 71.56 51.49 20.07 Both chr3 5 189405 189469 Pseudo ??? gaacaattaa aattctaggg 0 0 26.33 25.27 1.06 Eufind chr3 6 192482 192552 Gly GCC gtacaacaaa atttgcaggg 0 0 71.56 51.49 20.07 Both chr3 7 9249707 9249777 Gly GCC aacacaacaa attgtttttt 0 0 71.56 51.49 20.07 Both chr3 8 9463433 9463514 Ser CGA acaacaagcc atttttttta 0 0 81.28 49.43 31.85 Both chr3 9 11985229 11985302 Met CAT ttcttcttat tagccacaac 0 0 62.41 32.93 29.48 tRNAscan chr3 10 11994716 11994796 Leu CAA ctttgaagat taatattgag 0 0 52.25 25.30 26.95 Both chr3 11 11999829 11999902 Met CAT ttcccacgaa cgccaataga 0 0 67.69 41.73 25.96 Both chr3 12 14135983 14136063 Ile TAT atatattttt attataatgc 14136018 14136026 20.17 14.98 5.19 Eufind chr3 13 14743491 14743562 Met CAT ttcacaagaa tttttaattt 0 0 67.87 40.24 27.63 Both chr3 14 15843236 15843307 Met CAT tatcaacaat aaattcaatt 0 0 67.87 40.24 27.63 Both chr3 15 15882480 15882549 Pseudo ATT atgtgagcat cgtattcacc 0 0 24.89 29.88 -4.99 Eufind chr3 16 16988500 16988570 Gly GCC acacagcaaa acccttgaat 0 0 57.63 50.68 6.95 Both chr3 17 17063096 17063170 Pseudo ??? aagtgttcac aaaaaaaaaa 0 0 21.96 23.15 -1.19 Eufind chr3 18 18022694 18022765 Met CAT aaaacaaatt agttctgttt 0 0 67.25 39.17 28.08 Both chr3 19 18863143 18863226 Leu CAA acatcaaata tttttttatt 0 0 71.69 44.16 27.53 Both chr3 20 20171573 20171654 Ser AGA ctcaacaaat ctttttttgc 0 0 83.63 51.20 32.43 Both chr3 21 20710379 20710451 Val TAC aacatgaaca tgtttttttc 0 0 76.67 46.07 30.60 Both chr3 22 20945011 20945083 Ala TGC tagaatatat aaggaattca 0 0 66.31 41.98 24.33 Both chr3 23 21789214 21789285 Pro AGG tggcatgtaa ttttgtaatg 0 0 71.75 43.88 27.87 Both chr3 24 22268158 22268229 Asp GTC tgataacaaa tttttttgtt 0 0 68.28 52.71 15.57 Both chr3 25 22833960 22834022 Pseudo GGG tttaaaattt ccctttctta 0 0 24.42 6.42 18.00 Eufind chr3 26 23569571 23569641 Gly GCC taacatcaaa aaaatacgtt 0 0 38.33 33.24 5.09 Eufind chr3 27 23572150 23572220 Gly GCC taacatgaaa attgttagct 0 0 71.56 51.49 20.07 Both chr3 28 23573092 23573166 Pseudo ATT gcacgtccat tctccccaat 0 0 21.08 17.05 4.03 Eufind chr3 29 23611836 23611906 Gly GCC taacatgaaa attgttagct 0 0 71.56 51.49 20.07 Both chr3 30 24290224 24290308 Met CAT ataatattgg acgatttttt 24290262 24290272 46.26 30.78 15.48 Both chr3 31 24290623 24290694 Asp GTC gggcaatcaa gtgtaaatca 0 0 58.74 47.15 11.59 Both chr3 32 24292759 24292843 Met CAT gaataacaaa acttattatt 24292797 24292807 61.30 41.19 20.11 Both chr3 33 24584866 24584950 Met CAT caaacatcaa actatttctt 24584904 24584914 60.80 40.69 20.11 Both chr3 34 24585521 24585592 Asp GTC acattaacaa taaattatat 0 0 69.46 51.11 18.35 Both chr3 35 24956177 24956249 Arg ACG tctcaaaaat aagctctgtt 0 0 73.66 52.08 21.58 Both chr3 36 25278762 25278833 Pro AGG aatcaacaac attctttttt 0 0 71.75 43.88 27.87 Both chr3 37 25764156 25764237 Ser TGA tcaacaataa ttgttttttt 0 0 78.02 45.58 32.44 Both chr3 38 28586424 28586496 Pseudo ??? aagtatctcc aaaaaatctc 0 0 21.96 21.35 0.61 Eufind chr3 39 28829115 28829186 Gln TTG cctaccaaaa gtcatatata 0 0 37.71 22.42 15.29 Both chr3 40 29137190 29137261 Gly TCC atgtcaacaa ttttacactt 0 0 74.33 49.53 24.80 Both chr3 41 30878804 30878883 Leu TAG aatcagcaaa attatttttt 0 0 68.72 40.52 28.20 Both chr3 42 31247896 31247967 Asp GTC ataatatcaa ttttttttta 0 0 69.46 51.11 18.35 Both chr3 43 31673760 31673832 Phe GAA gtcaagaatg taaagacctc 0 0 41.31 26.81 14.50 Eufind chr3 44 31683243 31683314 His GTG agaacatcaa ctttttaaaa 0 0 62.38 35.43 26.95 Both chr3 45 33383602 33383674 Phe GAA agaacatcaa atttgcattt 0 0 72.68 54.44 18.24 Eufind chr3 46 33832544 33832626 Pseudo TTA tttttttttt tataatatgc 0 0 20.58 26.55 -5.97 Eufind chr3 47 34396968 34397039 Gly TCC ttaacatcaa atttatttat 0 0 74.33 49.53 24.80 Both chr3 48 34847066 34847138 Arg CCG tattaaaaaa ttttttaaaa 0 0 71.41 55.78 15.63 Both chr3 49 35501493 35501565 Pseudo TTA aactatcccc cttctccaca 0 0 22.25 28.95 -6.70 Eufind chr3 50 35838798 35838869 Pseudo GTC cagcaaataa attttttatt 0 0 35.89 35.25 0.64 Both chr3 51 35846851 35846922 Asp GTC tatcaaatga ttttttttat 0 0 69.46 51.11 18.35 Both chr3 52 37667499 37667579 Leu AAG gaagtatcaa tatttttttt 0 0 68.09 40.41 27.68 Both chr3 53 38099171 38099242 His GTG aatcaccaaa atttttttct 0 0 39.96 29.17 10.79 Eufind chr3 54 38099729 38099800 Pseudo GTG attcaccaaa atttttttct 0 0 30.60 37.20 -6.60 Eufind chr3 55 38389185 38389256 Pseudo TTA attaatcccc atttctccac 0 0 22.74 21.31 1.43 Eufind chr3 56 39740343 39740424 Ser TGA agacaaaaca ttttcttttt 0 0 80.82 48.39 32.43 Both chr3 57 40042784 40042856 Lys TTT taaacaacca ttatagaata 0 0 88.06 63.50 24.56 Both chr3 58 40172880 40172961 Ser AGA aacatcaaac atttttgtcc 0 0 83.63 51.20 32.43 Both chr3 59 40990870 40990941 Pro AGG aataataaat ttttgtattt 0 0 71.75 43.88 27.87 Both chr3 60 41126279 41126352 Arg TCG tagcacgtaa attttttgaa 0 0 81.86 60.33 21.53 Both chr3 61 41456701 41456773 Pseudo ??? tataacttgt cttctccaca 0 0 20.84 30.68 -9.84 Eufind chr3 62 41738789 41738860 Glu TTC gacacaagca ctattatttt 0 0 72.52 50.58 21.94 Both chr3 63 42312540 42312611 Gln CTG ccaacgtcaa tttttgttct 0 0 69.91 50.33 19.58 Both chr3 64 44203201 44203273 Thr TGT tgttatgaga ttttttctct 0 0 71.03 48.91 22.12 Both chr3 65 44204510 44204423 Ser GGA tcattatgta cacccttatc 0 0 56.41 29.00 27.41 Both chr3 66 44201420 44201348 Phe GAA gtcaagaatg attcatttct 0 0 64.76 40.49 24.27 Both chr3 67 44197840 44197768 Met CAT atgataaacg aggtatagat 0 0 58.82 31.62 27.20 Both chr3 68 44191414 44191341 Arg ACG agactgggtg caaccggcaa 0 0 61.16 46.00 15.16 Eufind chr3 69 42909179 42909107 Arg CCT ttcacaacaa ttttattttt 0 0 70.85 54.61 16.24 Both chr3 70 42855729 42855648 Ser TGA taacaacaga agcctttttc 0 0 80.82 48.39 32.43 Both chr3 71 42747580 42747504 Pseudo ATT attttgtccc tttattcacc 42747543 42747539 21.22 39.08 -17.86 Eufind chr3 72 42598714 42598642 Met CAT atgataaacg aggtatagat 0 0 58.82 31.62 27.20 Both chr3 73 37399900 37399827 Ile AAT aacaagaatt gtctttttct 0 0 86.52 62.10 24.42 Both chr3 74 35095320 35095246 Pseudo ATT ctaatatccc tattcacttt 0 0 21.32 24.01 -2.69 Eufind chr3 75 34736867 34736795 Arg CCG tattaaaaaa ttttttaaaa 0 0 71.41 55.78 15.63 Both chr3 76 34241949 34241877 Arg TCT taaatatgaa ccattttgtt 0 0 73.60 54.76 18.84 Both chr3 77 32348345 32348274 Asp GTC taacaataag tttttttatt 0 0 69.46 51.11 18.35 Both chr3 78 32302238 32302156 Leu TAA aacaacttaa ataatttttt 0 0 62.25 31.36 30.89 Both chr3 79 32299100 32299018 Leu TAA aacaactcaa atatatatat 0 0 62.25 31.36 30.89 Both chr3 80 31361296 31361224 Ala CGC ataacaacat attttcatct 0 0 63.43 41.85 21.58 Both chr3 81 31202811 31202740 Sup TTA ttgtccccgt cttctccaca 0 0 20.93 12.98 7.95 Eufind chr3 82 30572785 30572703 Leu TAA tatgcaatga ttatttttta 0 0 63.99 33.10 30.89 Both chr3 83 28972461 28972390 Undet ??? actatatctc acttctccat 0 0 29.18 19.06 10.12 Eufind chr3 84 28777022 28776943 Leu TAG acatgttata tttttatgtt 0 0 44.62 31.83 12.79 Both chr3 85 28737949 28737878 Pro TGG atcaacaacc ttttttgttg 0 0 71.37 41.38 29.99 Both chr3 86 28523790 28523717 Thr AGT ttcacaagaa attttttatt 0 0 75.17 48.55 26.62 Both chr3 87 28219688 28219616 Ala AGC ttagcacaaa atttgatctt 0 0 68.12 43.78 24.34 Both chr3 88 28211289 28211217 Ala AGC acgagtagat actttctttt 0 0 63.74 40.39 23.35 Both chr3 89 28206941 28206869 Ala AGC tatattatat actaaatttt 0 0 56.32 32.56 23.76 Both chr3 90 26368767 26368673 Tyr GTA attgcatctt actgttttat 26368730 26368709 74.98 45.61 29.37 Both chr3 91 26236899 26236828 Gln CTG atcaacaatc taattttatc 0 0 67.69 52.44 15.25 Both chr3 92 25433393 25433322 Gln TTG agagcacgag gatttttttc 0 0 74.09 57.50 16.59 Both chr3 93 24864500 24864419 Ser AGA tttatcaaat gtttttcctt 0 0 75.97 47.53 28.44 Both chr3 94 24744146 24744056 Tyr GTA aaaccaacaa tttttttgtt 24744109 24744092 74.82 45.45 29.37 Both chr3 95 24659063 24658991 Arg ACG atcacaacag tttttttgtt 0 0 72.21 49.55 22.66 Both chr3 96 24656725 24656653 Arg ACG aaaacatcaa aattgaattt 0 0 59.12 44.50 14.62 Both chr3 97 24489380 24489308 Pseudo ??? ctttattccc cttctccaca 0 0 20.74 33.23 -12.49 Eufind chr3 98 23053499 23053427 Pseudo ??? taatatcccc cttctccaca 0 0 21.02 33.94 -12.92 Eufind chr3 99 22717076 22717004 Phe GAA tgacatgaat attagctttt 0 0 77.43 54.21 23.22 Both chr3 100 22057233 22057161 Arg CCT atcacaagca ttttgttgca 0 0 76.26 56.99 19.27 Both chr3 101 21631912 21631839 Val CAC acatcaactt tttttttttc 0 0 85.42 60.67 24.75 Both chr3 102 21616100 21616027 Val CAC acatcaactt tttttttttc 0 0 85.42 60.67 24.75 Both chr3 103 18773639 18773565 Pseudo GTT aattgtcctc tattcacttt 0 0 20.02 16.98 3.04 Eufind chr3 104 18473561 18473487 Pseudo ??? ttttgtccac tatccacatt 0 0 22.44 9.60 12.84 Eufind chr3 105 18230934 18230862 Pseudo ATT aaagatcccc cttctccaca 0 0 25.21 23.18 2.03 Eufind chr3 106 16488476 16488393 Leu CAA acattagaat ttttcttttt 0 0 63.94 42.68 21.26 Both chr3 107 15798036 15797965 Thr GGT ctcaaatgga tttttgtcaa 0 0 52.69 28.30 24.39 Both chr3 108 13881492 13881421 Glu TTC tatacaacaa tttttagatt 0 0 72.52 50.58 21.94 Both chr3 109 12005518 12005446 Met CAT atgataaacg aggtatagat 0 0 58.82 31.62 27.20 Both chr3 110 11989645 11989574 Val GAC gggcaaggga aacccaatgc 0 0 51.69 23.29 28.40 Both chr3 111 10440171 10440100 Trp CCA tgaaaagaaa attcttctta 0 0 44.99 22.96 22.03 Eufind chr3 112 10400680 10400608 Pseudo ATT cttaatcccc cttctccaca 0 0 23.55 30.59 -7.04 Eufind chr3 113 10329024 10328953 Trp CCA tgaaaagaaa attcttctta 0 0 51.50 28.53 22.97 Eufind chr3 114 9714315 9714244 Asn ATT tgaatccccg cttctccaca 0 0 22.23 16.93 5.30 Eufind chr3 115 9396845 9396769 Pseudo CAT attatcaaat taaatttttg 9396807 9396797 27.28 28.27 -0.99 Eufind chr3 116 7739557 7739478 Pseudo TTA tttttttttt tataataatg 0 0 20.25 31.55 -11.30 Eufind chr3 117 1862320 1862082 SeC TCA gattaaggtg ttttttttaa 1862286 1862118 20.01 0.00 0.00 Eufind chr3 118 505747 505674 Asn GTT ataacaagaa atttcttttt 0 0 80.56 54.45 26.11 Both chr3 119 428416 428335 Leu TAA ttttttttcc ataataatgc 428380 428376 21.33 11.77 9.56 Eufind chr3 120 334215 334142 Thr AGT ccaacaagca aactatttta 0 0 74.28 46.95 27.33 Both chr3 121 221660 221586 Pseudo ??? aaaaatcccc tctccacaat 0 0 20.09 16.51 3.58 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr4 1 2888659 2888745 Ser GCT tttgaattgg tttattgatg 2888697 2888711 39.76 26.08 13.68 Both chr4 2 2890254 2890325 Gln TTG gaataaaaaa atcatatcta 0 0 45.66 29.51 16.15 Eufind chr4 3 4758707 4758779 Pseudo ATT ggatagtccc cttattcacc 0 0 21.63 36.78 -15.15 Eufind chr4 4 4795135 4795214 Leu TAG tttcgagtaa tggcatccta 0 0 55.01 25.39 29.62 Both chr4 5 4810893 4810964 Asn GTT ttacctttgt atttttttca 0 0 80.72 61.48 19.24 Both chr4 6 5732962 5733034 Lys CTT atatcaataa cttttgaaaa 0 0 84.38 62.40 21.98 Both chr4 7 9785650 9785723 Pseudo ATT ttttatccct ctctccatat 0 0 24.92 23.27 1.65 Eufind chr4 8 9864651 9864723 Glu TTC gggcaagtat gggtactaca 0 0 52.35 29.22 23.13 Both chr4 9 9864784 9864867 Tyr GTA gattcttcct aaaatttact 0 0 53.74 24.96 28.78 Both chr4 10 10070879 10070951 Thr TGT tgttatgaga tttttttctc 0 0 71.03 48.91 22.12 Both chr4 11 10081534 10081605 Thr GGT ctcaaatgga tttttgtcaa 0 0 61.68 31.17 30.51 Both chr4 12 10108816 10108898 Leu TAA cacatcttca taattttttt 0 0 62.25 31.36 30.89 Both chr4 13 11547523 11547594 Lys TTT aacgaattat ataatgtaat 0 0 88.43 63.37 25.06 Both chr4 14 17895907 17895980 Ile AAT tcaagcaatt ttttattttg 0 0 86.52 62.10 24.42 Both chr4 15 19931889 19931960 Gln CTG taacaagtga aaaatatttt 0 0 70.82 50.78 20.04 Both chr4 16 20895174 20895257 Leu CAA taagcatcaa attttttcaa 0 0 70.52 44.98 25.54 Both chr4 17 21002680 21002761 Ser GCT taagcaacaa aattcttttt 0 0 75.77 42.92 32.85 Both chr4 18 21018944 21019025 Ser GCT taaacaacaa gatttttatt 0 0 52.87 32.52 20.35 Eufind chr4 19 21022027 21022108 Ser GCT taagtaacaa aattgttttt 0 0 75.26 40.28 34.98 Both chr4 20 21029493 21029574 Ser GCT ttagcaacaa aattgaattt 0 0 79.53 46.09 33.44 Both chr4 21 21670986 21671057 Met CAT taacataata atgaaaatta 0 0 67.87 40.24 27.63 Both chr4 22 23752935 23753005 Gly GCC aaaacaaaca ttttttcttt 0 0 71.56 51.49 20.07 Both chr4 23 23753076 23753148 Phe GAA caaacatcaa attattctac 0 0 77.43 54.21 23.22 Both chr4 24 24739425 24739497 Val TAC catgcaaaca tttaatttcc 0 0 73.04 45.78 27.26 Both chr4 25 24974135 24974208 Pseudo AAT ttctgtcctt aaaaaaatat 0 0 25.79 35.58 -9.79 Eufind chr4 26 25393174 25393246 Ala AGC ataatcagat ttttttatat 0 0 68.12 43.78 24.34 Both chr4 27 26646238 26646309 Thr CGT ggacatggtt acttcttttt 0 0 82.82 60.66 22.16 Both chr4 28 28249594 28249665 His GTG agcacgtcat aaattctttt 0 0 62.38 35.43 26.95 Both chr4 29 29487571 29487650 Pseudo TAT tttttttttg tataacaatg 29487606 29487614 22.86 22.27 0.59 Eufind chr4 30 30769907 30769979 Ala AGC attacaaaat ctttttgaaa 0 0 68.12 43.78 24.34 Both chr4 31 31051850 31051922 Arg TCT tcatgaaaca tttttttttt 0 0 70.42 54.90 15.52 Both chr4 32 31057596 31057668 Arg TCT taaacaacca tgtttttaaa 0 0 70.66 55.31 15.35 Both chr4 33 32214104 32214175 Gly TCC cgaacaacaa tatttcattt 0 0 74.33 49.53 24.80 Both chr4 34 32635741 32635813 Glu CTC atagcacaag ttttcttttt 0 0 77.70 54.15 23.55 Both chr4 35 32640823 32640895 Glu CTC tttaacatca actagctttt 0 0 77.70 54.15 23.55 Both chr4 36 32653800 32653871 Asp GTC tcataattga ttattttttt 0 0 69.46 51.11 18.35 Both chr4 37 32721600 32721671 Gly TCC atgcaaacaa tatttacttt 0 0 63.04 46.90 16.14 Both chr4 38 32886163 32886234 Gly TCC atgcaaacaa tatttacttt 0 0 63.04 46.90 16.14 Both chr4 39 32955191 32955262 Gly TCC atgcaaacaa tatttacttt 0 0 63.04 46.90 16.14 Both chr4 40 32988390 32988463 Ile AAT tcaagcaatt ttttattttg 0 0 86.52 62.10 24.42 Both chr4 41 33056253 33056326 Ile AAT tcaagcaatt ttttattttg 0 0 86.52 62.10 24.42 Both chr4 42 34133877 34133961 Pseudo GGA tcattatgta cacccttatc 0 0 25.06 8.06 17.00 Eufind chr4 43 36093615 36093698 Met CAT ttaacatcat acaatctttt 36093653 36093662 61.94 41.84 20.10 Both chr4 44 37114208 37114281 Val CAC atcacaagtt tttttaattt 0 0 85.42 60.67 24.75 Both chr4 45 37176302 37176373 Cys GCA gtatctcgat tttgaaataa 0 0 78.18 58.76 19.42 Both chr4 46 37225142 37225214 Ala TGC tgaataacat ttttttttat 0 0 66.31 41.98 24.33 Both chr4 47 37308485 37308558 Ala TGC tgaataacat tttttttttt 0 0 61.68 37.66 24.02 Eufind chr4 48 37562727 37562797 Pseudo ATT gctttgtctt ctacttattc 0 0 20.09 20.46 -0.37 Eufind chr4 49 39663524 39663596 Pseudo TTA ggtccacccc cttctccaca 0 0 21.36 28.07 -6.71 Eufind chr4 50 39788718 39788789 Asp GTC tcatcaaaaa aaattttttt 0 0 68.28 52.71 15.57 Both chr4 51 39805464 39805535 Asp GTC atatcaaaaa tttttttttt 0 0 68.28 52.71 15.57 Both chr4 52 41739094 41739165 Pro AGG cgtcatcaat tttttcatgt 0 0 71.75 43.88 27.87 Both chr4 53 41793967 41794039 Glu CTC taaacatcaa ttctttttat 0 0 77.70 54.15 23.55 Both chr4 54 41870292 41870364 Phe GAA gttaacatca tttgtatttt 0 0 77.43 54.21 23.22 Both chr4 55 41891136 41891064 Arg ACG ttcgattaaa ttttatattt 0 0 74.06 52.84 21.22 Both chr4 56 41891003 41890920 Leu TAA aaacactctg tttttatttt 0 0 47.48 26.53 20.95 Eufind chr4 57 41883047 41882975 Arg ACG ttcaattgat ttttatattt 0 0 74.06 52.84 21.22 Both chr4 58 39672271 39672200 Pseudo ATT atgttgtctc acttataaga 0 0 22.85 30.69 -7.84 Eufind chr4 59 39084237 39084165 Ala TGC aatatcatgt tttcttttct 0 0 64.11 39.78 24.33 Both chr4 60 36636872 36636788 Met CAT caaacattac caattatttt 36636834 36636824 61.30 41.19 20.11 Both chr4 61 36263674 36263603 His GTG atcaaatcat ttttttattt 0 0 62.38 35.43 26.95 Both chr4 62 36260853 36260782 His GTG accacatcat attctttttt 0 0 62.38 35.43 26.95 Both chr4 63 36092711 36092640 Gln TTG tatcagcacg tttttttgta 0 0 74.09 57.50 16.59 Both chr4 64 34386293 34386221 Ala AGC gagataatat ctttttgggt 0 0 68.12 43.78 24.34 Both chr4 65 34338886 34338807 Leu TAG tacacaacaa ttctttttta 0 0 68.65 40.39 28.26 Both chr4 66 33582974 33582903 Gln TTG tgaaagtggt cctttaatat 0 0 67.42 56.98 10.44 Both chr4 67 31918795 31918724 Gly TCC atgcaaacaa tatttacttt 0 0 63.04 46.90 16.14 Both chr4 68 30770106 30770035 Thr TGT atcagcaaga ctttttataa 0 0 81.19 54.96 26.23 Both chr4 69 30188626 30188554 Pseudo ??? ttgaatctcc cttctccaca 0 0 20.65 32.81 -12.16 Eufind chr4 70 29948681 29948609 Ala TGC aatatcaagt aaatataata 0 0 69.90 45.16 24.74 Both chr4 71 29780129 29780058 Pseudo ATT atgaaatccc tttattcacc 0 0 25.81 32.21 -6.40 Eufind chr4 72 29547835 29547754 Pseudo TTA tttttttttt tataaaatgc 0 0 22.65 27.09 -4.44 Eufind chr4 73 29215702 29215629 Thr AGT gtaacaagaa aaatttcact 0 0 74.28 46.95 27.33 Both chr4 74 28211780 28211708 Glu CTC ttattgcaca tgttttttgt 0 0 77.70 54.15 23.55 Both chr4 75 26997032 26996961 Trp CCA ataaacatgt gtttttaatt 0 0 76.38 53.43 22.95 Both chr4 76 24375945 24375873 Arg CCT tcatacatca tcattatcat 0 0 72.63 53.36 19.27 Both chr4 77 22633015 22632943 Lys CTT tagtcatcaa atatttgtgt 0 0 84.38 62.40 21.98 Both chr4 78 22437801 22437730 Pseudo TTG aatgaactct cgtctgtatt 0 0 29.92 31.97 -2.05 Eufind chr4 79 21046901 21046820 Ser GCT ctagcaacaa aattgttatt 0 0 79.60 46.21 33.39 Both chr4 80 20490926 20490855 Pro CGG tagcacacaa tttatttttg 0 0 69.81 45.03 24.78 Both chr4 81 20303008 20302938 Gly GCC caacatcaaa tataaagctg 0 0 71.56 51.49 20.07 Both chr4 82 19868218 19868147 Glu TTC accatcaact cttttttgct 0 0 72.67 50.77 21.90 Both chr4 83 19818841 19818768 Met CAT ttcccacgaa cgccaataga 0 0 44.91 38.04 6.87 Eufind chr4 84 15408698 15408625 Val AAC gcgacaagtt tgtgttttat 0 0 77.22 55.27 21.95 Both chr4 85 15040956 15040884 Val TAC cacaacaaca tattcttttt 0 0 76.67 46.07 30.60 Both chr4 86 14479021 14478956 Undet ??? ttgtcaagat acttttgttt 0 0 41.38 18.53 22.85 Eufind chr4 87 11954394 11954321 Met CAT ttcccacgaa cgccaataga 0 0 67.69 41.73 25.96 Both chr4 88 10118759 10118688 Arg TCT aaaaagaaaa aattttttcc 0 0 62.51 33.29 29.22 Eufind chr4 89 10080921 10080849 Glu TTC gggcaagtat gggtactaca 0 0 52.35 29.22 23.13 Both chr4 90 10080788 10080705 Tyr GTA gattcttcct aaaatttact 0 0 53.74 24.96 28.78 Both chr4 91 10080316 10080243 Asp GTC ctttttccct atggatacaa 0 0 62.76 45.30 17.46 Both chr4 92 10072188 10072101 Ser GGA tcattatgta cacccttatc 0 0 56.41 29.00 27.41 Both chr4 93 10069104 10069032 Phe GAA gtcaagaatg attcatttct 0 0 64.76 40.49 24.27 Both chr4 94 9864036 9863965 Thr GGT ctcaaatgga tttttgtcaa 0 0 61.68 31.17 30.51 Both chr4 95 5670745 5670674 Pseudo ??? ttttgtccac acaataaaaa 0 0 21.95 18.65 3.30 Eufind chr4 96 5434763 5434691 Pseudo TTA atttatcccc cttctccaca 0 0 22.25 32.90 -10.65 Eufind chr4 97 4811575 4811502 Arg ACG agactgggtg caaccggcaa 0 0 61.16 46.00 15.16 Eufind chr4 98 4621058 4620986 Lys TTT attactgtat tttcaatagt 0 0 70.70 53.87 16.83 Both chr4 99 3063239 3063166 Ile TAT ataaatgtaa taatttcatt 0 0 83.51 69.40 14.11 Both chr4 100 3053073 3053000 Ile TAT agtaatgtaa taattctgat 0 0 85.40 69.82 15.58 Both chr4 101 2939470 2939397 Ile TAT ataaatgtaa taatttcatt 0 0 83.51 69.40 14.11 Both chr4 102 2929304 2929231 Ile TAT agtaatgtaa taattctgat 0 0 85.40 69.82 15.58 Both chr4 103 2854406 2854333 Asn GTT tgtgacatgt atttcaaatt 0 0 80.56 54.45 26.11 Both chr4 104 2450681 2450609 Ala AGC ttaacatctt tattttttca 0 0 68.12 43.78 24.34 Both chr4 105 2412331 2412259 Ala AGC ttaacatctt tattttttca 0 0 68.12 43.78 24.34 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr5 1 1121342 1121415 His GTG atagtatagg caggaatcta 0 0 40.58 27.73 12.85 Both chr5 2 1380902 1380975 Thr AGT taatcaacaa aaattattat 0 0 75.17 48.55 26.62 Both chr5 3 2465636 2465707 Thr TGT gtaacaagaa tgtttgcatt 0 0 81.57 55.69 25.88 Both chr5 4 3308191 3308263 Lys CTT acattaaata ttttgaccct 0 0 84.38 62.40 21.98 Both chr5 5 3872108 3872181 Pseudo AAT cattgtcctc aaaaaaaaaa 0 0 20.48 33.32 -12.84 Eufind chr5 6 4170967 4171039 Glu CTC ctttaacaaa atcatttttt 0 0 77.31 53.42 23.89 Both chr5 7 4174798 4174870 Glu CTC ctatcacaaa atcatttttt 0 0 77.31 53.42 23.89 Both chr5 8 4492636 4492708 Lys CTT ataataagtt atgttttttt 0 0 84.38 62.40 21.98 Both chr5 9 4537034 4537113 Pseudo TAA ttttgttttt tataataatg 4537071 4537076 22.10 31.55 -9.45 Eufind chr5 10 4608064 4608146 Pseudo TTA tttttttttt tataatatgc 0 0 20.68 22.44 -1.76 Eufind chr5 11 6595107 6595180 Met CAT agatccgtag gcaccccctt 0 0 55.08 28.64 26.44 Both chr5 12 7519842 7519924 Ala TGC ttcacatgaa cagttagttt 7519877 7519891 32.71 11.79 20.92 Eufind chr5 13 7535746 7535819 Ile TAT ctatcaacgc taatttcgat 0 0 85.40 69.82 15.58 Both chr5 14 7545320 7545391 Gln CTG ggcaactaat aaaatcttta 0 0 69.91 50.33 19.58 Both chr5 15 8081681 8081751 Gly GCC aatcacaaaa tcttttcttt 0 0 71.56 51.49 20.07 Both chr5 16 8742690 8742761 Asp GTC tcatcaaata ttttataacc 0 0 69.46 51.11 18.35 Both chr5 17 9108552 9108624 Lys TTT gtgctatgta acaaataaga 0 0 85.96 59.35 26.61 Both chr5 18 9439248 9439321 Asn ATT aatttgtccc ttataaggtg 0 0 31.85 24.20 7.65 Eufind chr5 19 11932938 11933011 Arg ACG agacatggtg caaccggcaa 0 0 54.01 37.93 16.08 Eufind chr5 20 15249921 15249994 Val AAC ttaacaacag gccactttac 0 0 76.88 51.16 25.72 Both chr5 21 16049203 16049275 Lys CTT aatacaacta tttaacagtg 0 0 84.38 62.40 21.98 Both chr5 22 17372777 17372848 Trp CCA tataacaagt cattttgaat 0 0 76.38 53.43 22.95 Both chr5 23 17409128 17409211 Leu CAA ataataagaa ttttttattt 0 0 59.57 44.20 15.37 Both chr5 24 18547941 18548014 Asn GTT taaacaagta tttttgcatt 0 0 80.56 54.45 26.11 Both chr5 25 18702784 18702855 Gln TTG aaggtgtgat attgaaaatt 0 0 74.09 57.50 16.59 Both chr5 26 19012426 19012498 Pseudo TTA atctatcgcc cttctccaca 0 0 25.06 35.30 -10.24 Eufind chr5 27 19162861 19162933 Pseudo ??? aattgtcctc aagaaaaatt 0 0 21.01 24.21 -3.20 Eufind chr5 28 19246346 19246420 Pseudo ATT aactaatccc tattcacctt 0 0 23.05 26.90 -3.85 Eufind chr5 29 19289539 19289610 Trp CCA aacatcatgt attcccttgg 0 0 77.63 55.47 22.16 Both chr5 30 20390454 20390527 Asn GTT aaaacaagaa acttttcatt 0 0 80.56 54.45 26.11 Both chr5 31 22104933 22105013 Leu CAA catggaagat taatattgag 0 0 51.21 24.78 26.43 Both chr5 32 22194914 22194994 Leu CAA catggaagat taatattgag 0 0 51.21 24.78 26.43 Both chr5 33 22705745 22705817 Undet ??? taaataagaa acttttcatt 0 0 50.34 37.12 13.22 Eufind chr5 34 23208262 23208333 Pseudo TTA aacaatcccc acttctccac 0 0 27.86 29.75 -1.89 Eufind chr5 35 26060225 26060309 Met CAT agaacatgaa tatccttttt 26060263 26060273 61.30 41.19 20.11 Both chr5 36 27105635 27105707 Pseudo ??? tttagtcccc aaaaaaaaaa 0 0 20.08 28.94 -8.86 Eufind chr5 37 29805074 29805146 Glu CTC aaaacacaaa tcttttttta 0 0 77.31 53.42 23.89 Both chr5 38 32007033 32007114 Ser AGA taacatcaac tttttgtttt 0 0 83.63 51.20 32.43 Both chr5 39 32182321 32182392 Asp GTC acatcaaaga attttttact 0 0 68.28 52.71 15.57 Both chr5 40 32425959 32426032 Arg TCG aagaaaaaag ctgaaatttt 0 0 81.86 60.33 21.53 Both chr5 41 32948204 32948285 Ser AGA acaaaaaaca ttttcatttt 0 0 84.12 51.69 32.43 Both chr5 42 33495044 33495125 Ser AGA taacatcaaa tttttttttt 0 0 84.12 51.69 32.43 Both chr5 43 33703984 33704055 Lys TTT tacaacacaa aatacacatt 0 0 88.43 63.37 25.06 Both chr5 44 34184255 34184327 Gly ACC agactgggtg caaccggcaa 0 0 47.88 41.58 6.30 Eufind chr5 45 35630478 35630561 Leu CAA ttatcaaatg atttttattt 0 0 70.52 44.98 25.54 Both chr5 46 35855689 35855760 Thr GGT ctcaaatgga tttttgtcaa 0 0 61.68 31.17 30.51 Both chr5 47 37818460 37818530 Gly GCC tgaacaagaa tttctgagag 0 0 71.56 51.49 20.07 Both chr5 48 37823632 37823702 Gly GCC agaatatgaa tttcttagag 0 0 71.56 51.49 20.07 Both chr5 49 37980265 37980342 Pseudo ??? taataacaaa attaattttt 0 0 24.90 8.35 16.55 Eufind chr5 50 38620495 38620566 Glu TTC taacaagaat ctatttttac 0 0 72.67 50.77 21.90 Both chr5 51 38633824 38633895 Glu TTC taacatcaat actttttaaa 0 0 72.67 50.77 21.90 Both chr5 52 39414906 39414978 Pseudo TTA tttttttttg tataatatgc 0 0 22.16 19.61 2.55 Eufind chr5 53 39460328 39460400 Pseudo TTA tttttttttg tataatatgc 0 0 22.16 19.61 2.55 Eufind chr5 54 40120399 40120478 Leu TAG aacatagcaa atatttttgt 0 0 68.72 40.52 28.20 Both chr5 55 42831974 42831902 Asn GTT ctcacgaatt gttttttaca 0 0 74.12 48.02 26.10 Eufind chr5 56 42002014 42001943 Gly TCC aaacaagcaa tttgcttttt 0 0 74.33 49.53 24.80 Both chr5 57 40181055 40180983 Phe GAA ttaccatcaa tacctaccaa 0 0 77.43 54.21 23.22 Both chr5 58 39775792 39775721 Met CAT atatctataa aaaatgcttt 0 0 67.87 40.24 27.63 Both chr5 59 39178904 39178833 Glu TTC gtcacaactt ttttttgatt 0 0 72.67 50.77 21.90 Both chr5 60 39002709 39002637 Met CAT atgataaacg aggtatagat 0 0 58.40 32.19 26.21 Both chr5 61 37623657 37623574 Leu CAA atcatcaaat ttcttttttc 0 0 65.94 45.62 20.32 Both chr5 62 35855063 35854991 Glu TTC gggcaagtat gggtactaca 0 0 52.35 29.22 23.13 Both chr5 63 35854930 35854853 Pseudo GTA gattcttcct aaaatttact 0 0 30.33 2.37 27.96 Both chr5 64 35854465 35854392 Asp GTC ctttttccct atggatacag 0 0 62.76 45.30 17.46 Both chr5 65 35771568 35771496 Arg ACG aacaacacag tttttgctac 0 0 72.21 49.55 22.66 Both chr5 66 35408911 35408839 Lys CTT taaataataa atttttttct 0 0 84.38 62.40 21.98 Both chr5 67 34596333 34596261 Arg CCT atattaacaa tttctttttt 0 0 76.45 57.35 19.10 Both chr5 68 34216915 34216842 Val CAC caaacatctt ctcttttcct 0 0 86.07 61.32 24.75 Both chr5 69 34184942 34184871 Asn GTT ttacctttgt atttttttca 0 0 59.59 50.13 9.46 Both chr5 70 33912761 33912691 Sup TTA attaattctc acttctccac 0 0 26.89 21.03 5.86 Eufind chr5 71 33890230 33890159 Trp CCA ctatgaaccc tatttttctt 0 0 61.84 49.40 12.44 Eufind chr5 72 33495264 33495191 Asn GTT taaacaagta gtctttgcat 0 0 80.56 54.45 26.11 Both chr5 73 32948415 32948342 Asn GTT aacaacgaaa tttctgttat 0 0 83.25 57.15 26.10 Both chr5 74 32182538 32182465 Ile AAT ttaggcaaat ctttttaata 0 0 86.52 62.10 24.42 Both chr5 75 31876531 31876459 Phe GAA ctttcaaata ttttttattt 0 0 77.43 54.21 23.22 Both chr5 76 31859300 31859228 Phe GAA taatcaaata ttttttggtt 0 0 77.43 54.21 23.22 Both chr5 77 31655915 31655844 Pseudo ATT aaaatgtccc acttattcac 0 0 25.93 27.52 -1.59 Eufind chr5 78 31557041 31556962 Pseudo TTG ataacccatt tttcggtggg 31557007 31556999 21.59 22.56 -0.97 Eufind chr5 79 31462875 31462805 Gly GCC ttgcaccaaa actttgggct 0 0 71.56 51.49 20.07 Both chr5 80 26924705 26924631 Pseudo TTA tttttttttt atacattatg 0 0 20.49 16.92 3.57 Eufind chr5 81 26645662 26645591 Pseudo ATT tggtagtccc acttattcac 0 0 29.09 29.59 -0.50 Eufind chr5 82 26068430 26068346 Met CAT tgtacatgaa tatccttttt 26068392 26068382 61.30 41.19 20.11 Both chr5 83 26046030 26045937 Tyr GTA gtattcacaa tttctttttt 26045993 26045973 75.48 46.11 29.37 Both chr5 84 23084300 23084228 Pseudo TTA aacaatcccc acttctccac 0 0 24.77 29.72 -4.95 Eufind chr5 85 20574270 20574199 Asp GTC actcaacaaa tgtttttttt 0 0 49.01 40.95 8.06 Both chr5 86 20564242 20564171 Asp GTC acatcaaaaa ctttttattt 0 0 63.70 48.28 15.42 Both chr5 87 20105966 20105893 Val AAC agacaagata tctaatgttt 0 0 73.04 51.93 21.11 Both chr5 88 20073790 20073717 Asn GTT aatacaagaa acttttcatt 0 0 80.56 54.45 26.11 Both chr5 89 19721383 19721310 Asn GTT aacatgagaa tttttcattt 0 0 80.56 54.45 26.11 Both chr5 90 19432924 19432855 Pseudo ATC attgtgtccc ccacttattc 0 0 22.11 27.45 -5.34 Eufind chr5 91 17358817 17358746 Cys GCA cacaacgcaa ttttattgtt 0 0 78.18 58.76 19.42 Both chr5 92 16976988 16976915 Leu CAA aataatcaat aaacttgatt 0 0 34.99 26.76 8.23 Eufind chr5 93 16827804 16827731 Val AAC aggaacaaca attttattat 0 0 76.95 55.01 21.94 Both chr5 94 13842246 13842165 Ser GCT tctcatcagc ttttaccaat 0 0 79.53 46.09 33.44 Both chr5 95 13175813 13175740 Ile AAT aaatataaat attttatttt 0 0 84.87 60.44 24.43 Both chr5 96 13174117 13174044 Ile AAT aaatataaat attttatttt 0 0 84.87 60.44 24.43 Both chr5 97 12562788 12562717 Gly TCC tcaaaaagta atttttttta 0 0 74.33 49.53 24.80 Both chr5 98 12562492 12562421 Gly TCC tcaacaagta gtttatcctt 0 0 68.62 48.30 20.32 Both chr5 99 9912893 9912821 Lys TTT ctaacaccaa tttttattcc 0 0 87.57 62.49 25.08 Both chr5 100 9611229 9611158 Thr TGT aaatacatct gattttcttt 0 0 78.91 50.87 28.04 Both chr5 101 8983340 8983268 Asn GTT tcataaacaa attttaatcc 0 0 75.46 49.35 26.11 Both chr5 102 8873868 8873797 Glu TTC tcacaagaat attttttaac 0 0 72.67 50.77 21.90 Both chr5 103 8742892 8742819 Ile AAT atattcaaat gttataataa 0 0 86.52 62.10 24.42 Both chr5 104 8103119 8103037 Pseudo TTA tttttttttg tataatatgc 0 0 23.67 36.59 -12.92 Eufind chr5 105 7856914 7856843 Glu TTC ttaacatcaa ctttttttag 0 0 74.39 52.49 21.90 Both chr5 106 6704796 6704715 Ser TGA aagatcatca tattttttaa 0 0 80.89 48.51 32.38 Both chr5 107 6646697 6646626 Trp CCA tatcacaaat caatttggtt 0 0 76.38 53.43 22.95 Both chr5 108 6637595 6637524 Trp CCA tatcacaagt cattttgaat 0 0 76.38 53.43 22.95 Both chr5 109 6547906 6547834 Lys TTT taatcaaaaa atatttttta 0 0 87.57 62.49 25.08 Both chr5 110 5375723 5375650 Ile AAT tttaacaaga attttcgtct 0 0 86.52 62.10 24.42 Both chr5 111 4058060 4057989 Lys TTT actacaacaa atttcttgtt 0 0 88.52 63.44 25.08 Both chr5 112 3587949 3587876 Sup TTA aattatcccc tgtccacaat 0 0 27.65 11.71 15.94 Eufind chr5 113 2452277 2452205 Ala AGC tacattaaat tgttgcgatt 0 0 68.12 43.78 24.34 Both chr5 114 2295763 2295692 Cys GCA aataacacaa tttcatgtta 0 0 78.18 58.76 19.42 Both chr5 115 777457 777380 Ile AAT tataattcac ttttagtttc 0 0 21.73 12.40 9.33 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr6 1 244475 244547 Pseudo TTA aaaaattctc cttctccaca 0 0 20.26 29.94 -9.68 Eufind chr6 2 5186716 5186788 Ala AGC taaaatatat tttttatcat 0 0 63.12 43.28 19.84 Both chr6 3 5195670 5195742 Ala AGC taatatataa tatatatata 0 0 62.17 43.61 18.56 Both chr6 4 5196233 5196305 Ala AGC taaactatat tttttatcat 0 0 68.12 43.78 24.34 Both chr6 5 5203028 5203100 Ala AGC aaaactaaat tttttatcat 0 0 56.62 32.44 24.18 Both chr6 6 5208144 5208216 Ala AGC taatatatat ttttttaaga 0 0 41.42 28.89 12.53 Eufind chr6 7 5210119 5210191 Ala AGC aaaactaaat tttttatcat 0 0 38.31 20.11 18.20 Both chr6 8 5214068 5214140 Ala AGC aaaactaaat tttttatcat 0 0 43.51 33.62 9.89 Both chr6 9 8487314 8487385 Met CAT aattaacaaa aaaccatcat 0 0 43.08 31.09 11.99 Eufind chr6 10 8516646 8516717 Met CAT aatcaacaag aaaccaccaa 0 0 60.95 33.33 27.62 Both chr6 11 8520661 8520732 Met CAT tttcaacaag gaatcatatt 0 0 63.33 41.43 21.90 Eufind chr6 12 13259096 13259170 Pseudo ??? atcggtcccc tattcacctt 0 0 20.82 16.52 4.30 Eufind chr6 13 13353889 13353962 Thr AGT aattactgta ttgtttgatc 0 0 74.28 46.95 27.33 Both chr6 14 13795042 13795113 Asn ATT tatttccccg cttctccaca 0 0 20.91 15.20 5.71 Eufind chr6 15 17014949 17015012 Pseudo ATT agttccttga ccccacttat 0 0 21.80 17.19 4.61 Eufind chr6 16 17057724 17057795 Met CAT attccaacaa aaaaagaaaa 0 0 67.87 40.24 27.63 Both chr6 17 17059155 17059226 Met CAT attacaacaa aaaaagaaaa 0 0 66.50 40.27 26.23 Both chr6 18 21250430 21250511 Ser GCT agtaaatgat attctttttg 0 0 74.16 42.09 32.07 Both chr6 19 22605598 22605524 Asn ATT tcgggtccct tttccacatt 0 0 22.85 10.16 12.69 Eufind chr6 20 20033844 20033770 Asn ATT agtaagtccc tattcacctt 0 0 25.82 18.56 7.26 Eufind chr6 21 18971294 18971221 Val AAC caaacaataa ttcttttagg 0 0 77.22 55.27 21.95 Both chr6 22 10561450 10561376 Pseudo ATT atatagtccc tattcactaa 0 0 26.29 27.98 -1.69 Eufind chr6 23 5758365 5758293 Pseudo ??? atgaatcccc cttctccaca 0 0 20.18 32.14 -11.96 Eufind chr6 24 3794079 3794008 Glu TTC tctacaattt atttttgtat 0 0 52.06 39.28 12.78 Both chr6 25 3691838 3691767 Glu TTC tctacaattt atttttgtat 0 0 52.06 39.28 12.78 Both chr6 26 2804166 2804094 Ala TGC acatcagaat tttttttgaa 0 0 66.31 41.98 24.33 Both chr6 27 2706213 2706142 Met CAT tctctaaaaa taatatttaa 0 0 49.96 27.08 22.88 Eufind chr6 28 952015 951942 Asn GTT aagtgaacaa aatttatttt 0 0 71.62 49.62 22.00 Both chr6 29 454678 454607 Pro TGG aacatcaact tcaactactt 0 0 71.37 41.38 29.99 Both   chr7 1 1743744 1743824 Leu CAG tgtaacatga aaaaaatttt 0 0 68.57 39.87 28.70 Both chr7 2 1895675 1895756 Pseudo TTC tttttttgtt tataaaaatg 1895712 1895721 21.77 36.43 -14.66 Eufind chr7 3 2808351 2808431 Pseudo TTT tatttatttt tataacaatg 2808388 2808394 20.68 26.80 -6.12 Eufind chr7 4 2917918 2917998 Pseudo TTT tatttatttt tataacaatg 2917955 2917961 20.68 26.80 -6.12 Eufind chr7 5 5811971 5812043 Pseudo ATT tatcgttccc cttagttatg 0 0 20.81 32.23 -11.42 Eufind chr7 6 6341863 6341935 Arg CCG gttataaaat atttctttct 0 0 84.90 63.76 21.14 Both chr7 7 6542641 6542713 Pseudo ATT acactgtccc ccctagttat 0 0 21.14 41.58 -20.44 Eufind chr7 8 8566981 8567054 Ile AAT tttaacaagt tttttttttt 0 0 86.52 62.10 24.42 Both chr7 9 8570117 8570190 Ile AAT aataacaagc tatttcattt 0 0 86.52 62.10 24.42 Both chr7 10 10898132 10898204 Lys TTT taaataacaa aaattgttat 0 0 87.57 62.49 25.08 Both chr7 11 12251091 12251170 Pseudo TTG tcaacccatt tttgagtggg 12251125 12251133 21.47 25.36 -3.89 Eufind chr7 12 12581466 12581547 Ser TGA tgcaaaatca tttttacaat 0 0 80.82 48.39 32.43 Both chr7 13 12715176 12715247 Val GAC gggcaaggga aacctagtgc 0 0 48.21 19.80 28.41 Both chr7 14 12747082 12747153 Val GAC gggcaaggga aacctagtgc 0 0 49.95 21.54 28.41 Both chr7 15 13025695 13025767 Pseudo ??? aatcatcccc cttctccaca 0 0 20.05 32.56 -12.51 Eufind chr7 16 13256597 13256676 Pseudo TAT ttctttttgg tataacaatg 13256632 13256640 20.96 24.91 -3.95 Eufind chr7 17 14516942 14517013 Pro AGG gaacatcatt aaaatctatt 0 0 71.75 43.88 27.87 Both chr7 18 15396727 15396797 Gly GCC aacatcaaaa atattttttt 0 0 71.56 51.49 20.07 Both chr7 19 15925515 15925586 Gln TTG aacacaaatg ttcaattttt 0 0 74.09 57.50 16.59 Both chr7 20 16554987 16555072 Tyr GTA tgaacacgat ttttttttat 16555024 16555036 75.03 45.66 29.37 Both chr7 21 17874257 17874337 Leu AAG ataacaaaaa attctttttt 0 0 68.09 40.41 27.68 Both chr7 22 17878672 17878752 Leu AAG aaatcaacaa actctttttt 0 0 68.09 40.41 27.68 Both chr7 23 17884840 17884920 Leu AAG tttgtataaa tttatatata 0 0 69.68 40.32 29.36 Both chr7 24 18292880 18292951 Asn GTT agtccattgt aattttgagt 0 0 82.49 60.22 22.27 Both chr7 25 19422695 19422767 Ala AGC ttaaatatat ttttattttc 0 0 68.12 43.78 24.34 Both chr7 26 20329179 20329272 Tyr GTA attactcatc attttttttt 20329216 20329236 74.07 44.70 29.37 Both chr7 27 20330538 20330631 Tyr GTA attacccatc ttttttttat 20330575 20330595 74.07 44.70 29.37 Both chr7 28 20464020 20464091 Pseudo ??? tgttatcccc acttctccac 0 0 22.17 25.05 -2.88 Eufind chr7 29 20954436 20954507 Asp GTC ataacaccaa ttttttttat 0 0 62.95 49.90 13.05 Both chr7 30 21271374 21271445 Gln TTG tgtgtgtggt ctttaataat 0 0 74.09 57.50 16.59 Both chr7 31 22195542 22195624 Pseudo TTA tttttttttt tataatatgc 0 0 20.85 24.09 -3.24 Eufind chr7 32 26549204 26549285 Ser GCT aaatcaataa aatttttaat 0 0 79.53 46.09 33.44 Both chr7 33 27059501 27059585 Met CAT aaacatcaac aacatttttt 27059539 27059549 61.30 41.19 20.11 Both chr7 34 28220487 28220560 Arg TCG aaacatcaag aaatgttttt 0 0 82.11 60.83 21.28 Both chr7 35 28478117 28478188 Leu AAG tgtatgaaat atttttgata 0 0 63.88 36.00 27.88 tRNAscan chr7 36 28931083 28931158 Pseudo ATT cgtggtcccc tattcacttt 0 0 20.62 19.38 1.24 Eufind chr7 37 29022611 29022684 Ile AAT aagacacgaa attttatatt 0 0 86.52 62.10 24.42 Both chr7 38 30420249 30420320 Asp GTC ttaacatcaa agatttttac 0 0 68.28 52.71 15.57 Both chr7 39 31616552 31616624 Pseudo ATT tcgagttccc tttttccaca 0 0 25.18 22.78 2.40 Eufind chr7 40 32268246 32268319 Pro TGG accaatgtaa tccctaacta 0 0 60.50 28.44 32.06 Both chr7 41 32268471 32268544 Trp CCA tgaaaagaaa attccgcccg 0 0 67.94 39.21 28.73 Both chr7 42 33504160 33504232 Pseudo ??? ctgtattaga caaaaagaaa 0 0 21.48 27.10 -5.62 Eufind chr7 43 33514246 33514327 Ser TGA gttgcaagtc ttttgttttt 0 0 80.82 48.39 32.43 Both chr7 44 33772112 33772184 Pseudo ??? tttttttttg gataatatgc 0 0 20.31 19.09 1.22 Eufind chr7 45 34464380 34464460 Leu AAG tagcactata ttttttcctt 0 0 69.68 40.32 29.36 Both chr7 46 34732433 34732505 Glu CTC aattcagcaa ttttttcatt 0 0 79.78 56.24 23.54 Both chr7 47 34859804 34859876 Pseudo ??? tttagtctct ttttttcaca 0 0 24.61 20.51 4.10 Eufind chr7 48 34861057 34861117 Cys GCA tcttaggaag tttaatatca 0 0 38.01 22.82 15.19 Eufind chr7 49 34724434 34724361 Val AAC ataatatgat gacatttttt 0 0 77.22 55.27 21.95 Both chr7 50 33489285 33489213 Ala CGC atgttgtcac tttttattaa 0 0 65.78 42.22 23.56 Both chr7 51 32855136 32855067 Asn ATT atatagtccc cccacttatt 0 0 26.53 21.00 5.53 Eufind chr7 52 32126332 32126252 Pseudo TTA tttttttttt tataatatgc 0 0 20.17 16.75 3.42 Eufind chr7 53 31548058 31547988 Gly CCC tcagcaacaa aaaattttgg 0 0 68.50 35.50 33.00 Both chr7 54 30429485 30429415 Gly TCC ttaatattaa ttttcttttt 0 0 46.91 21.37 25.54 tRNAscan chr7 55 27849385 27849314 Cys GCA attcaacaac ttttttttcc 0 0 78.18 58.76 19.42 Both chr7 56 27552358 27552287 Asp GTC taacacatca tatttttttt 0 0 69.46 51.11 18.35 Both chr7 57 27552220 27552149 His GTG ttatatcaaa attttatttt 0 0 62.38 35.43 26.95 Both chr7 58 26395718 26395646 Ala TGC ttaacgacat taatatttta 0 0 64.11 39.78 24.33 Both chr7 59 25809152 25809080 Lys CTT attacaacaa aaaatttatt 0 0 84.38 62.40 21.98 Both chr7 60 24616865 24616793 Ala AGC aatacaacaa aatttacttt 0 0 68.12 43.78 24.34 Both chr7 61 22478579 22478506 Pseudo ??? tatatggacg actccacatt 0 0 20.64 18.25 2.39 Eufind chr7 62 21094776 21094703 Val CAC accatcaatt tttttatttt 0 0 82.62 54.74 27.88 Both chr7 63 19992899 19992825 Asn ATT tcggagtctc ttataaggtg 0 0 23.23 16.70 6.53 Eufind chr7 64 19422901 19422829 Phe GAA tcaaacaaaa tttttgtttt 0 0 77.43 54.21 23.22 Both chr7 65 18714282 18714211 Asn GTT agtccattgt aattttgagt 0 0 69.33 53.45 15.88 Both chr7 66 18547047 18546974 Val CAC aatatcaatt tatttgaaat 0 0 83.01 55.47 27.54 Both chr7 67 13326681 13326609 Sup TTA tttttttttg tataatatgc 0 0 26.72 19.63 7.09 Eufind chr7 68 11174528 11174456 Lys TTT ataataacaa aagaaatcat 0 0 88.06 63.50 24.56 Both chr7 69 11173625 11173553 Lys TTT ttaataacaa aataaatcat 0 0 74.46 54.36 20.10 Both chr7 70 11170999 11170927 Lys TTT atagtaacaa aagaaatcat 0 0 86.16 63.89 22.27 Both chr7 71 8006827 8006756 Thr TGT agcatcatcg aatagagaga 0 0 70.11 49.79 20.32 Eufind chr7 72 5299436 5299364 Phe GAA gtcaagaatg attcatttct 0 0 64.76 40.49 24.27 Both chr7 73 5295856 5295784 Met CAT atgataaacg aggtatagat 0 0 58.82 31.62 27.20 Both chr7 74 5286629 5286556 His GTG atagtatagg catgaatcta 0 0 53.21 31.72 21.49 Both chr7 75 5282933 5282854 Leu TAG tttcgagtaa tggcatccta 0 0 55.01 25.39 29.62 Both chr7 76 3196165 3196083 Pseudo TTA tttatttttt tataatatgc 0 0 20.20 27.99 -7.79 Eufind chr7 77 2390566 2390484 Pseudo TTA tttttttttt ataatataca 0 0 20.68 22.44 -1.76 Eufind chr7 78 1589447 1589380 Pseudo ATT cccgatgtcc cccaacttat 0 0 22.46 28.32 -5.86 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr8 1 973193 973264 Thr TGT taaacaagtt attgatttct 0 0 81.72 54.17 27.55 Both chr8 2 1183534 1183604 Gly GCC atcacaacaa cctgtggagg 0 0 71.56 51.49 20.07 Both chr8 3 1819905 1819979 Pseudo TTA tttttttttt taatatgcaa 0 0 21.97 22.27 -0.30 Eufind chr8 4 2680173 2680245 Arg TCT aaaaacaaaa cactttttgt 0 0 73.60 54.76 18.84 Both chr8 5 2806334 2806406 Lys CTT aatgcaagaa ttttttttaa 0 0 81.72 59.74 21.98 Both chr8 6 5028163 5028246 Leu CAA aatatcaaat aatgtttcat 0 0 70.52 44.98 25.54 Both chr8 7 5405970 5406042 Pseudo TAT atgggtcccc aaaaaagtag 0 0 22.40 8.62 13.78 Eufind chr8 8 5490010 5490090 Leu CAG taatgcaaaa tacaattaca 0 0 39.33 20.17 19.16 Eufind chr8 9 6557168 6557240 Glu CTC gaattaccaa tttgtttttg 0 0 77.70 54.15 23.55 Both chr8 10 6824029 6824112 Met CAT taagcataaa ttatcttttt 6824067 6824076 54.76 34.65 20.11 Both chr8 11 7591264 7591334 Gly GCC acacagcaaa acccttgaat 0 0 57.63 50.68 6.95 Both chr8 12 7911427 7911508 Ser GCT aaacaacata tatttgtaat 0 0 79.53 46.09 33.44 Both chr8 13 9236603 9236675 Lys CTT acacaaccaa attgtttgtt 0 0 84.38 62.40 21.98 Both chr8 14 9259122 9259195 Asn GTT taggcaagaa attttctttt 0 0 80.56 54.45 26.11 Both chr8 15 12373222 12373310 Ser TGA attagctttt ttttcttagc 0 0 40.33 32.67 7.66 Both chr8 16 13015359 13015431 Glu CTC gagcgttgct tttattttta 0 0 77.31 53.42 23.89 Both chr8 17 13158276 13158348 Glu CTC gagcgttgct tttattttta 0 0 77.31 53.42 23.89 Both chr8 18 13964592 13964678 Ser GCT tttgaattgg tttattgatg 0 0 56.84 27.58 29.26 Both chr8 19 13966173 13966244 Gln TTG gaatcctaaa gtcatggata 0 0 60.45 30.91 29.54 Both chr8 20 14454327 14454400 Val AAC tttcgtcgat tttttatgaa 0 0 77.22 55.27 21.95 Both chr8 21 14675706 14675780 Pseudo ??? aatcatcgtc tctccatatt 0 0 22.16 23.77 -1.61 Eufind chr8 22 14977275 14977347 Pseudo ATT tactgttctt cttctccaca 0 0 21.38 25.85 -4.47 Eufind chr8 23 15506374 15506445 Asp GTC aggtatctgg tttttttttt 0 0 69.46 51.11 18.35 Both chr8 24 18066509 18066582 Asn GTT taaacaagta aacttttatt 0 0 77.76 51.65 26.11 Both chr8 25 18951062 18951134 Phe GAA ttaacatgtt tttttttttt 0 0 77.43 54.21 23.22 Both chr8 26 18954216 18954288 Phe GAA ctatcaccaa ttcttttttt 0 0 77.43 54.21 23.22 Both chr8 27 18962918 18962990 Phe GAA taatcatcat ttctttttat 0 0 68.71 45.49 23.22 tRNAscan chr8 28 18965924 18965996 Phe GAA taatcgttat ttttttatga 0 0 77.43 54.21 23.22 Both chr8 29 19600363 19600434 Undet ??? gattgtcctc aaataaaaat 0 0 21.02 15.39 5.63 Eufind chr8 30 20565235 20565306 Glu TTC ttaagcatct tctttttttt 0 0 72.67 50.77 21.90 Both chr8 31 20749509 20749580 Thr TGT tatataagtt ttaacttctc 0 0 81.19 54.96 26.23 Both chr8 32 21139866 21139946 Leu CAG ttatcaaaaa atttttattt 0 0 68.57 39.87 28.70 Both chr8 33 23254124 23254197 His GTG atagtatagg catgaatcta 0 0 45.29 23.80 21.49 Both chr8 34 23977003 23977075 Lys CTT ataaacatta tttttttttt 0 0 84.38 62.40 21.98 Both chr8 35 24610592 24610671 Leu TAG tttcgagtaa tggcacccta 0 0 55.01 25.39 29.62 Both chr8 36 25616173 25616247 Pseudo TTA catcatcccc atttaattgt 0 0 24.91 26.89 -1.98 Eufind chr8 37 27306661 27306742 Ser AGA gtcacattag ctttttctta 0 0 81.59 47.73 33.86 Both chr8 38 27356858 27356939 Ser GCT tatcacaaca atttcctttt 0 0 79.53 46.09 33.44 Both chr8 39 27455610 27455691 Ser GCT tatcacaaca atttcctttt 0 0 79.53 46.09 33.44 Both chr8 40 27507111 27507191 Pseudo TTC attttttttt atagctgcat 27507146 27507155 22.18 18.82 3.36 Eufind chr8 41 29334672 29334751 Leu TAG tacacaacaa ttctttttta 0 0 68.65 40.39 28.26 Both chr8 42 30252421 30252493 Pseudo ??? taatatcccc cttctccaca 0 0 20.48 32.50 -12.02 Eufind chr8 43 30577626 30577697 Lys TTT gtgaacagaa ttcttttgag 0 0 88.52 63.44 25.08 Both chr8 44 31316499 31316580 Ser GCT tcaacaagtt ttttgttttt 0 0 79.53 46.09 33.44 Both chr8 45 32285859 32285931 Ala TGC atttcaacat ttttttaatt 0 0 66.31 41.98 24.33 Both chr8 46 32937742 32937814 Pseudo ??? tattattccc cttctccaca 0 0 20.39 32.13 -11.74 Eufind chr8 47 32952715 32952786 Pseudo ??? acaaatccct aaaaaaatat 0 0 22.04 25.76 -3.72 Eufind chr8 48 33050932 33051003 His GTG taacaacaaa agttttttat 0 0 63.70 36.75 26.95 Both chr8 49 33051090 33051161 His GTG aagcatcaat aatataacat 0 0 62.38 35.43 26.95 Both chr8 50 33574139 33574219 Pseudo TTC tatttttttt tataataatg 33574175 33574181 24.34 29.22 -4.88 Eufind chr8 51 34200156 34200227 Pro TGG tcatcacgca attttcgttt 0 0 71.37 41.38 29.99 Both chr8 52 37248701 37248782 Ser AGA ttgcaacaat ctttttgatg 0 0 75.58 48.23 27.35 Eufind chr8 53 37257178 37257251 Val AAC taatacaaag tttcctttct 0 0 76.88 51.16 25.72 Both chr8 54 37274914 37274987 Val AAC tatcacaaat tttccatttt 0 0 76.88 51.16 25.72 Both chr8 55 37150442 37150369 Val AAC taatacaaat tctgctcttc 0 0 76.79 51.07 25.72 Both chr8 56 37149202 37149129 Val AAC atttccaaat ttgagttttt 0 0 70.83 49.75 21.08 Both chr8 57 37143801 37143720 Ser AGA tacaacaaat tttttttttt 0 0 84.12 51.69 32.43 Both chr8 58 36821585 36821522 Sup TTA atccccataa ccccacttct 0 0 21.02 10.02 11.00 Eufind chr8 59 36668699 36668619 Leu CAG atatacaaag attttattta 0 0 68.57 39.87 28.70 Both chr8 60 36065396 36065324 Phe GAA taaataagtt ttttgttttc 0 0 77.43 54.21 23.22 Both chr8 61 36041788 36041714 Pseudo ATT cttttatccc ttcaccttat 0 0 20.23 24.41 -4.18 Eufind chr8 62 35823733 35823662 Trp CCA tatcacgaca attccatcct 0 0 77.63 55.47 22.16 Both chr8 63 34029906 34029835 His GTG taaccatcaa aagttttttt 0 0 62.38 35.43 26.95 Both chr8 64 33877890 33877818 Pseudo ??? aagtgtcctc aaaaaaaaaa 0 0 22.46 29.26 -6.80 Eufind chr8 65 32862837 32862765 Pseudo ??? tattattccc cttctccaca 0 0 20.39 32.13 -11.74 Eufind chr8 66 32847864 32847793 Pseudo ??? acaaatccct aaaaaaatat 0 0 22.04 25.76 -3.72 Eufind chr8 67 30811108 30811036 Ala TGC ttaacagatt aagttacttt 0 0 68.44 43.45 24.99 Both chr8 68 28319545 28319473 Arg ACG aacatcaaat ttattctttt 0 0 72.81 50.80 22.01 Both chr8 69 28319394 28319311 Leu CAA acatcgacat tctctttatt 0 0 70.82 44.46 26.36 Both chr8 70 27332295 27332223 Pseudo ATT aaggtgtccc cttattcacc 0 0 24.56 42.37 -17.81 Eufind chr8 71 27114598 27114519 Pseudo TTA tatttttttt ataataatgc 0 0 22.36 24.56 -2.20 Eufind chr8 72 20775751 20775679 Lys CTT accaacaaga aaaattgaaa 0 0 84.38 62.40 21.98 Both chr8 73 20505392 20505319 Ile TAT ctaacaaaca gttttggtat 0 0 85.40 69.82 15.58 Both chr8 74 20110545 20110474 His GTG gaacaccaat cacatctttt 0 0 62.38 35.43 26.95 Both chr8 75 19284752 19284680 Phe GAA ctatcatcaa attttttatt 0 0 77.43 54.21 23.22 Both chr8 76 17905514 17905432 Leu TAA aacatcttta aaaatgtttt 0 0 62.25 31.36 30.89 Both chr8 77 16378652 16378572 Pseudo TAT ttattttttt tataataata 16378617 16378609 20.52 26.48 -5.96 Eufind chr8 78 15435968 15435897 Glu TTC taacacatct attttttggc 0 0 72.67 50.77 21.90 Both chr8 79 14453074 14453001 Asn GTT acaccaacaa tttttcatta 0 0 80.56 54.45 26.11 Both chr8 80 9584273 9584201 Pseudo ATT tttacgtccc cttattcacc 0 0 24.56 42.37 -17.81 Eufind chr8 81 8435166 8435094 Arg ACG taatatcaat cttttcattt 0 0 72.21 49.55 22.66 Both chr8 82 8074045 8073974 Pseudo ??? tatgcatccc cttctccaca 0 0 21.86 30.69 -8.83 Eufind chr8 83 7403298 7403226 Lys CTT aaacaaccaa aattttgttt 0 0 84.38 62.40 21.98 Both chr8 84 5378503 5378431 Ala TGC tttacaaaat ttttcacctt 0 0 64.11 39.78 24.33 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.