GtRNAdb
>> tRNAscan-SE
>> Lowe Lab
 
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tRNAscan-SE Analysis of Medicago truncatula (March 2009 Version 3.0)

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>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
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>> Analysis Notes
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)


Structural alignments are generated by aligning tRNA sequences against
domain-specific tRNA covariance models with the use of
COVE.




[Ala]
[Arg]
[Asn]
[Asp]
[Cys]
[Gln]
[Glu]
[Gly]
[His]
[Ile]
[Leu]
[Lys]
[Met]
[Phe]
[Pro]
[Ser]
[Thr]
[Trp]
[Tyr]
[Val]

[Suppressor]
[Selenocysteine]








Ala tRNAs




>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<.<<<<<<<<.
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr7.trna60-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr7.trna25-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr6.trna4-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr5.trna113-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr4.trna64-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr4.trna30-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr4.trna26-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr4.trna105-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr4.trna104-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr3.trna87-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr2.trna52-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr2.trna29-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr2.trna28-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr2.trna26-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr2.trna16-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr1.trna49-AlaAGC Sc: 68.12  
GGGGATGTAGCTCA.GATGGTA.GAGTGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr2.trna30-AlaAGC Sc: 66.65  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtATGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr3.trna88-AlaAGC Sc: 63.74  
>>>>.>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<.<<<.<<<<.
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtACGGGGATCGATACCCC.GCAACTCCA Medicago_truncatula_chr6.trna2-AlaAGC Sc: 63.12  
>>>>>>>..>>>>..........<<<<.>>.>>.......................<<.<<................>>>>>.......<<<<.<<<<<<<<.
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCAAGAG...........GtACGGGGATCGATACCCC.GCATCTCCA Medicago_truncatula_chr6.trna3-AlaAGC Sc: 62.17  
>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<.<<<<<<<<.
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GTGAGAG...........GtACGGGGATTGATACCCC.GCATCTCCA Medicago_truncatula_chr6.trna5-AlaAGC Sc: 56.62  
GGGGATGTAGCTCA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GCGAGAG...........GtATAGGGATTGATACCCT.GCATCTCCA Medicago_truncatula_chr3.trna89-AlaAGC Sc: 56.32  
>>>>.>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<.<<<.<<<<.
GGGGATGTAGCTTA.GATGGTA.GAGCGCTCGCTTAGCA...............T.GTGAGAG...........GtATGGGGATCGATACCTT.GCAACTCCA Medicago_truncatula_chr6.trna8-AlaAGC Sc: 43.51  
>>>>>>>..>.>>..........<<.<.>>>>>.......................<<<<<................>>.>>.......<<.<.<<<<<<<<.
GGAGATGTGGATCA.GATGGTA.GAGTGCTCGCTTAGCA...............T.GCGAGAG...........GtATGCGGATCGATACCCT.GTATTTCCA Medicago_truncatula_chr6.trna6-AlaAGC Sc: 41.42  
>>>>>>>..>>>............<<<.>>>>>.......................<<<<<.................>>>>.......<<<<..<<<<<<<.
GGGGATGTAGCTCA.GATGGTA.TAGTGCTCGCTTAGCA...............T.GTGAGAG...........GgACGGGGATTGATACCCC.ACATCTCCA Medicago_truncatula_chr6.trna7-AlaAGC Sc: 38.31  


>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<.<<<<<<<<.
GGGGACGTAGCTCA.TATGGTA.GAGCGCTCGCTTCGCA...............T.GCGAGAG...........GcACGGGGTTCGATTCCCC.GCGTCTCCA Medicago_truncatula_chr7.trna50-AlaCGC Sc: 65.78  
GGGGGTGTAGCTCA.TATGGTA.GAGCGCTCGCTTCGCA...............T.GCGAGAG...........GcACGGGGTTCGATTCCCC.GCACCTCCA Medicago_truncatula_chr0.trna11-AlaCGC Sc: 65.14  
GGGGTTGTAGCTCA.TATGGTA.GAGCGCTCGCTTCGCA...............T.GCGAGAG...........GcACGGGGTTCGATTCCCC.GCAGCTCCA Medicago_truncatula_chr3.trna80-AlaCGC Sc: 63.43  

>>>>>>>..>>>>..........<<<<.>>>>>.......................<<<<<................>>>>>.......<<<<.<<<<<<<<.
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GtACAGGGTTCGATCCCCT.GCATCTCCA Medicago_truncatula_chr4.trna70-AlaTGC Sc: 69.90  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GtACAGGGTTCGATCCCCT.GCATCTCCA Medicago_truncatula_chr2.trna40-AlaTGC Sc: 69.90  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GtACAGGGTTCGATCCCCT.GCATCTCCA Medicago_truncatula_chr2.trna22-AlaTGC Sc: 69.90  
GGGGATGTAGCTCA.AATGGTA.GAGCGCCCGCTTTGCA...............T.GCGGGAG...........GtACAGGGTTCGATACCCT.GCATCTCCA Medicago_truncatula_chr8.trna67-AlaTGC Sc: 68.44  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GcACGGGGTTCGATCCCCC.GCATCTCCA Medicago_truncatula_chr8.trna45-AlaTGC Sc: 66.31  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GcACGGGGTTCGATCCCCC.GCATCTCCA Medicago_truncatula_chr6.trna26-AlaTGC Sc: 66.31  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GcACGGGGTTCGATCCCCC.GCATCTCCA Medicago_truncatula_chr4.trna46-AlaTGC Sc: 66.31  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GcACGGGGTTCGATCCCCC.GCATCTCCA Medicago_truncatula_chr3.trna22-AlaTGC Sc: 66.31  
GGGGATGTAGCTCAcAT.GGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GtACGGGGTTCGATACCCC.GCATCTCCA Medicago_truncatula_chr8.trna84-AlaTGC Sc: 64.11  
GGGGATGTAGCTCAcAT.GGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GtACGGGGTTCGATACCCC.GCATCTCCA Medicago_truncatula_chr7.trna58-AlaTGC Sc: 64.11  
GGGGATGTAGCTCAcAT.GGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GtACGGGGTTCGATACCCC.GCATCTCCA Medicago_truncatula_chr4.trna59-AlaTGC Sc: 64.11  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTTGCTTTGCA...............T.GCGAGAG...........GtACAGGGTTCGATACCCT.GCATCTCCA Medicago_truncatula_chr2.trna34-AlaTGC Sc: 62.75  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GcACGGGGTTCGATCCCCCcGCATCTCCA Medicago_truncatula_chr4.trna47-AlaTGC Sc: 61.68  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GcACGGGGTTTGATCCCCC.GCATCTCCA Medicago_truncatula_chr2.trna67-AlaTGC Sc: 59.40  
GGGGATGTAGCTCA.AATGGTA.GAGCGCTCGCTTTGCA...............T.GCGAGAG...........GcACGGGGTTTGATCCCCC.GCATCTCCA Medicago_truncatula_chr2.trna4-AlaTGC Sc: 59.40  
>>>>>>>..>>>>..........<<<<.>>>...........................<<<................>>>>>.......<<<<.<<<<<<<<.
AGATCTGTAGCTCA.AATGGAA.GAGCGCTC.A.TTGCAttttgtttaaatgttT...GAGAT...........G.TGTTGGTTCGAATCCAG.CCGGATCTG Medicago_truncatula_chr5.trna12-AlaTGC Sc: 32.71  





Arg tRNAs




>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GACTCCGTGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGCGGAGTCG Medicago_truncatula_chr4.trna57-ArgACG Sc: 74.06  
GACTCCGTGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGCGGAGTCG Medicago_truncatula_chr4.trna55-ArgACG Sc: 74.06  
GACTCCATGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGTGGAGTCG Medicago_truncatula_chr3.trna35-ArgACG Sc: 73.66  
GACTCTGTGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGCAGAGTCG Medicago_truncatula_chr8.trna68-ArgACG Sc: 72.81  
GACTTCATGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGTGAAGTCG Medicago_truncatula_chr8.trna81-ArgACG Sc: 72.21  
GACTTCATGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGTGAAGTCG Medicago_truncatula_chr5.trna65-ArgACG Sc: 72.21  
GACTTCATGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGTGAAGTCG Medicago_truncatula_chr3.trna95-ArgACG Sc: 72.21  
GACTTCATGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGATCCCCAGTGAAGTCG Medicago_truncatula_chr1.trna72-ArgACG Sc: 72.21  
>>>>..>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<..<<<<.
GGGCCTGTAGCTCAGAGGAttA.GAGCACGTGGCTACGAACCACGGT...........GtCGGGGGTTCGAATCCCTCCTCGCCCA Medicago_truncatula_chr4.trna97-ArgACG Sc: 61.16  
GGGCCTGTAGCTCAGAGGAttA.GAGCACGTGGCTACGAACCACGGT...........GtCGGGGGTTCGAATCCCTCCTCGCCCA Medicago_truncatula_chr3.trna68-ArgACG Sc: 61.16  
>>>.>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<.
GATATCATGGCCCAATGGAt.A.AGGCGCTGGTCTACGGAACCAGAG...........AtTCTGGGTTCGACCCCCAGTGAAGTCG Medicago_truncatula_chr3.trna96-ArgACG Sc: 59.12  
>>>>..>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<..<<<<.
GGGCTTGTAGCTCAGAGGAttA.GAGCACGTGGTTACGAACCACGAT...........GtCGGGGGTTAGAATCCCTCCTCGCCCA Medicago_truncatula_chr5.trna19-ArgACG Sc: 54.01  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GGTCGCATAGCGGAGTGGAt.A.TCGCGTTAGACTCCGAATCTAAAG...........GtCGTGGGTTCGATTCCCACTGCGATCA Medicago_truncatula_chr7.trna6-ArgCCG Sc: 84.90  
GGTCGCGTGGCCTAATGGAt.A.AGGCGCTCGCCTCCGGAGCGGGAG...........AtTGTGGGTTCGAGTCCCACCGTGATCG Medicago_truncatula_chr3.trna75-ArgCCG Sc: 71.41  
GGTCGCGTGGCCTAATGGAt.A.AGGCGCTCGCCTCCGGAGCGGGAG...........AtTGTGGGTTCGAGTCCCACCGTGATCG Medicago_truncatula_chr3.trna48-ArgCCG Sc: 71.41  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GACCGCATAGCGCAGTGGAttA.GCGCGTTTGACTTCGGATCAAAAG...........GtCGTGGGTTCGACTCCCACTGTGGTCG Medicago_truncatula_chr7.trna34-ArgTCG Sc: 82.11  
GACCGCATAGCGCAGTGGAttA.GCGCGTCTGACTTCGGATCAGAAG...........GtCGTGGGTTCGACTCCCACTGTGGTCG Medicago_truncatula_chr5.trna40-ArgTCG Sc: 81.86  
GACCGCATAGCGCAGTGGAttA.GCGCGTCTGACTTCGGATCAGAAG...........GtCGTGGGTTCGACTCCCACTGTGGTCG Medicago_truncatula_chr3.trna60-ArgTCG Sc: 81.86  
GACCGCATAGCGCAGTGGAttA.GCGCGTCTGACTTCGGATCAGAAG...........GtCGTGGGTTCGACTCCCACTGTGGTCG Medicago_truncatula_chr2.trna74-ArgTCG Sc: 81.86  
GACCGCATAGCGCAGTGGAttA.GCGCGTCTGACTTCGGATCAGAAG...........GtCGTGGGTTCGACTCCCACTGTGGTCG Medicago_truncatula_chr2.trna1-ArgTCG Sc: 81.86  

>>>>>.>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<.
GCGCCTGTAGCTCAGTGGAt.A.GAGCGTCCGTTTCCTAAGCGGAAG...........GtCGTAGGTTCGACCCCTACCTGGCGCG Medicago_truncatula_chr5.trna67-ArgCCT Sc: 76.45  
GCGCCTGTAGCTCAGTGGAt.A.GAGCGTCTGTTTCCTAAGCAGAAG...........GtCGTAGGTTCGACCCCTACCTGGCGCG Medicago_truncatula_chr3.trna100-ArgCCT Sc: 76.26  
GCGCCTGTAGCTCAGTGGAt.A.GAGCGTCTGTTTCCTAAGCAGAAA...........GtCGTAGGTTCGACCCCTACCTGGCGCG Medicago_truncatula_chr4.trna76-ArgCCT Sc: 72.63  
GCGCCTGTAGCTCAGTGGAt.A.GAGCGTCTGTTTCCTAAGCAGAAA...........GtCGTAGGTTCGACCCCTACCTGGCGCG Medicago_truncatula_chr1.trna71-ArgCCT Sc: 72.63  
GCGCCTGTAGCTCAGTGGAt.A.GAGCGTCTGTTTCCTAAGCAGAAA...........GtCGTAGGTTCGACCCCTACCTGGCGCG Medicago_truncatula_chr1.trna19-ArgCCT Sc: 72.63  
GCGCTTGTAGCTCAGTGGAt.A.GAGCGTCTGTTTCCTAAGCAGAAG...........GtCGTAGGTTCGACCCCTATCTGGCGCG Medicago_truncatula_chr3.trna69-ArgCCT Sc: 70.85  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCGCCCATGGCCTAATGGAt.A.AGGCGCTTGACTTCTAATCAAGCG...........AtTGTGGGTTCGAGTCCCACTGGGCGTG Medicago_truncatula_chr8.trna4-ArgTCT Sc: 73.60  
GCGCCCATGGCCTAATGGAt.A.AGGCGCTTGACTTCTAATCAAGCG...........AtTGTGGGTTCGAGTCCCACTGGGCGTG Medicago_truncatula_chr3.trna76-ArgTCT Sc: 73.60  
GCGCCCATGGCCTAATGGAt.A.AGGCGCTTGACTTCTAATCAAGCG...........AtTGTGGGTTCGAGTCCCACTGGGCGTG Medicago_truncatula_chr2.trna35-ArgTCT Sc: 73.60  
GCGCTCATGGCCTAATGGAt.A.AGGCGCTTGACTTCTAATCAAGCG...........AtTGTGGGTTCGAGTCCCACTGGGCGTG Medicago_truncatula_chr1.trna54-ArgTCT Sc: 70.97  
GCGCCCGTGGCCTAATGGAt.A.AGGCGTTTGACTTCTAATCAAGCG...........AtTGTGGGTTCGAGTCCCACCGGGCGTG Medicago_truncatula_chr4.trna32-ArgTCT Sc: 70.66  
GCACCCGTGGCCTAATGGAt.A.AGGCGTTTGACTTCTAATCAAGCG...........AtTGTGGGTTCGAGTCCCACCGGGTGTG Medicago_truncatula_chr4.trna31-ArgTCT Sc: 70.42  
GCACCCGTGGCCTAACGGAt.A.AGGCGTTTGACTTCTAATCAAGCG...........AtTGTGGGTTCGAGTCCCACCGGGTGTG Medicago_truncatula_chr1.trna24-ArgTCT Sc: 67.97  
GCGTCCATTGTCTAATGGAt.A.GGACAGAGGTCTTCTAAACCTTTG...........G.TATAGGTTCAAATCCTATTGGACGCA Medicago_truncatula_chr4.trna88-ArgTCT Sc: 62.51  





Asn tRNAs




>>>>>>>....>>...........<<....>>>>>............<<<<<................>.>>>........<<<...<.......<<<<<<<.
GTGAGTATAACTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCATGG...........GcCG.GGGTTCGAAC.CCC.AcT.......TATTCACC Medicago_truncatula_chr5.trna18-AsnATT Sc: 31.85  
>.>.>.>..>.>>...........<<..<.>>>>>............<<<<<................>>>>>........<<<.<.<.......<.<.<.<.
GTGAGCATAGCTTAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCATGG...........G.CCGGGGTTCAAA..CCC.C.G.......TACACCCC Medicago_truncatula_chr5.trna81-AsnATT Sc: 29.09  
>>>..>>..>>>>...........<<<.<..>>>>............<<<<....................>>........<<............<<..<<<.
GTGAACATAGTTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........AtC.GGGGTTCGAAC.CC............TGGACACC Medicago_truncatula_chr7.trna51-AsnATT Sc: 26.53  
>>>.>....>.>>...........<<..<.>>>>>............<<<<<................>.>>>........<<<...<.........<.<<<.
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCATCG...........GtCG.GGGTTCGAAC.CCCaGaC.......ACCCCACT Medicago_truncatula_chr6.trna22-AsnATT Sc: 26.29  
>.>.>.>..>.>>...........<<..<..>>>>............<<<<.................>>>>>........<<<.<.<.......<.<.<.<.
GTGAGCTTAGCTCAATTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAA..CCC.C.G.......AACACCCC Medicago_truncatula_chr5.trna77-AsnATT Sc: 25.93  
>>>>>....>>>>...........<<<.<..>>.>............<.<<.................>.>>>........<<<...<.........<<<<<.
GTGAGCATAGTCCAGTTGGT.A..GGA.CAATGAATTATTAt....ATCCAGGG...........GaCG.GAGTTCGAAC.CTCgAaC.......ACCTCACG Medicago_truncatula_chr6.trna20-AsnATT Sc: 25.82  
>.>>.....>>>>...........<<<.<..>.>>............<<.<.................>>>>>........<<<.<.<..........<<.<.
GTGAACATAGTTCAGTTGGT.A..GGA.CAATACATTATTAt....ATGCAGAG...........G.TCGGGGTTCGAA..CCC.C.G.......GACTCCCA Medicago_truncatula_chr4.trna71-AsnATT Sc: 25.81  
>.>...>...>>>...........<<<....>>>>............<<<<.................>.>>>........<<<...<.......<...<.<.
GTGAGCTTAACTCAGTTGGT.A..GAG.ATATTGCATATTAta...TGCAAGA............G.CCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr3.trna105-AsnATT Sc: 25.21  
>.>>..>..>.>>...........<<..<.>>>>>............<<<<<................>>>>>........<<<.<.<.......<..<<.<.
GTGAGCTTAGCTCAGTTGGTaA..GAA.CATTGTATAATTT.....ATGCAGGG...........G.TTTGGGTTCGAAC.CCC.A.G.......ACATCCCA Medicago_truncatula_chr7.trna39-AsnATT Sc: 25.18  
>.>.>....>>>>...........<<<.<..>>>>............<<<<.................>>>.>........<.<.<.<.........<.<.<.
GTGAGCATAGTTCAGTTGGT.A..GAA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGAGTTCGAAC.C.C.C.G.......AACACCCC Medicago_truncatula_chr1.trna74-AsnATT Sc: 25.09  
>.>>>.>...>>>...........<<<....>>>>............<<<<.................>.>>>........<<<...<.......<.<<<.<.
GTGAACTTAACTCAGTTGGT.A..GGG.ATATTGCATATTAta...TGCAGGAG...........G.CCGGGGTTCGAAC.TCC.G.G.......ACTTCCCA Medicago_truncatula_chr4.trna7-AsnATT Sc: 24.92  
>>>.>>...>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<........<<.<<<.
GAGATA...GCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ATACTTCA Medicago_truncatula_chr3.trna15-AsnATT Sc: 24.89  
>.>......>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<...........<.<.
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr8.trna80-AsnATT Sc: 24.56  
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr8.trna70-AsnATT Sc: 24.56  
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr2.trna73-AsnATT Sc: 24.56  
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr2.trna72-AsnATT Sc: 24.56  
>.>..>>...>>>...........<<<....>>>>............<<<<.................>.>>>........<<<...<.......<<..<.<.
GTGAGCTTAGCTCAGTTGGT.A..GGG.ATATTGCATATTAta...TGCAGGA............G.CCGGGGTTCGAAC.CCC.G.G.......AGACTCCA Medicago_truncatula_chr1.trna16-AsnATT Sc: 23.85  
GTGAGGTTAGCTCAGTTGGT.A..GGG.ATATTGCATATTAta...TGCAGGA............G.CCGGGGTTCGAAC.CCC.G.G.......ACACTCCA Medicago_truncatula_chr3.trna112-AsnATT Sc: 23.55  
>>>>>....>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<.........<<<<<.
GTGAGCATAGCTCAGTTGGT.A..GGA.CAGTGCATTATTAt....ATGCAGGG...........GcCG.GGGTTCGAAC.CCCgAaC.......ACCTCACT Medicago_truncatula_chr0.trna1-AsnATT Sc: 23.37  
>>>>>.>..>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<.......<.<<<<<.
GTGAGCATAGCTCAATTGGGtA..GGA.CAATGCATTATTAt....ATGCAAGA...........GtCA.GGGTTCGAAC.CCC.AaT.......TATTCACC Medicago_truncatula_chr7.trna63-AsnATT Sc: 23.23  
>>>.>....>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<.........<.<<<.
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........GtCG.GGGTTCGAAC.CCCgAaC.......ACCCCACT Medicago_truncatula_chr5.trna28-AsnATT Sc: 23.05  
>>>>>.>..>>>>...........<<<.<.>>>>>............<<<<<................>.>>>........<<<...<.......<.<<<<<.
GTGAGCTTAGCTCAATTGGT.A..GGGaCATTGCATAATTT.....ATGCAAGG...........GtCG.GGGTTCGAAC.CCCaGaC.......ACTTCACT Medicago_truncatula_chr6.trna19-AsnATT Sc: 22.85  
>.>.>....>.>>...........<<..<..>>>>............<<<<.................>>>>>........<<<.<.<.........<.<.<.
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAA..CCC.C.G.......AACACCCC Medicago_truncatula_chr4.trna58-AsnATT Sc: 22.85  
>.>.>....>>>>...........<<<.<..>>>>............<<<<.................>>>>..........<<.<.<.........<.<.<.
GTGAGCATAGCTCAGTTGGT.A..GGG.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGATTCGAAC..CC.C.G.......AACACCCC Medicago_truncatula_chr2.trna14-AsnATT Sc: 22.81  
>.>......>>>>...........<<<.<..>>>>............<<<<.................>.>>>........<<<...<...........<.<.
GTGAGCATAGTTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.TCAGTGTTCGAAC.CAC.G.G.......ACACCCCA Medicago_truncatula_chr0.trna16-AsnATT Sc: 22.74  
>>>..>>..>>>>...........<<<.<.>>>>>............<<<<<................>>...............<.<.......<<..<<<.
GTGAGCATAGTTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGTATGG...........GtCGA.GGTTCGATC.....T.C.......TGGACACC Medicago_truncatula_chr0.trna30-AsnATT Sc: 22.72  
>>>>>.>..>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<.......<.<<<<<.
TTGAGCATAGCTCAGTTGGTaA..GGA.CAATGTATTATTAt....ATGCAGGG...........G.TCGGGGTTCGAAC.CCC.A.G.......T.TTTAAC Medicago_truncatula_chr2.trna31-AsnATT Sc: 22.63  
>>.......>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<............<<.
GTGAGCATAGCTCAATTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAT.CCC.G.G............ACA Medicago_truncatula_chr7.trna78-AsnATT Sc: 22.46  
>>>>..>...>>>...........<<<....>>>>............<<<<.................>.>>>........<<<...<.......<..<<<<.
TGAGC.TTAGCTCAGTTGGT.A..GGG.ATATTGCATATTAta...TGCAAGA............G.CCGGGGTTCGAAC.CCC.G.G.......ACACTCAA Medicago_truncatula_chr3.trna114-AsnATT Sc: 22.23  
>.>.>>>...>>>...........<<<....>>>>............<<<<.................>>>>>........<<<.<.<.......<<<.<.<.
GTGAGTTTAGCTCAGTTGGT.A..GAG.ATATTGCATATTAta...TGCAGGT............G.CCGGGGTTCGAA..CCC.T.G.......AACACTCC Medicago_truncatula_chr0.trna10-AsnATT Sc: 22.10  
>>>>>....>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<.........<<<<<.
GTGAGCATAGCTCAGTTGGT.A..GAA.CAATGCATTATTAt....ATGTAGGG...........GtCG.GGGTTCGAAC.CCCgGaC.......ACCTCATT Medicago_truncatula_chr2.trna69-AsnATT Sc: 22.08  
>.>...>..>>>>...........<<<.<.>>>>>............<<<<<................>.>>>........<<<...<.......<...<.<.
GCGAGCTTAGTTCAGTTGGT.Ag.GGA.CATTGCATAATTT.....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCTCA Medicago_truncatula_chr2.trna56-AsnATT Sc: 21.86  
GCGAGCTTAGTTCAGTTGGT.Ag.GGA.CATTGCATAATTT.....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCTCA Medicago_truncatula_chr2.trna55-AsnATT Sc: 21.86  
>........>.>>...........<<..<..>>>>............<<<<.................>>>>>........<<<.<.<.............<.
GC....ATAGCTCAGCTGGT.A..GGA.CGATGCATTATTAt....ATGCAGGG...........G.CCTGGGTTCGAAC.CCC.G.G............ACA Medicago_truncatula_chr6.trna15-AsnATT Sc: 21.80  
>.>......>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<...........<.<.
GTGAGCATAGCCCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAA.CTC.A.G.......ACACCCCA Medicago_truncatula_chr4.trna3-AsnATT Sc: 21.63  
>.>...>..>>>>...........<<<.<.>>>>>............<<<<<................>.>>>........<<<...<.......<...<.<.
GTGAGCTTAGCTTAGTTGGT.A..GGGaCATTGCATAATTT.....ATGCAAGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr8.trna22-AsnATT Sc: 21.38  
>>>.>.>....>>...........<<.....>>>>............<<<<.................>.>>>........<<<...<.......<.<.<<<.
GTGAGCTTAACTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGGG...........GtCG.GGGTTCGAAC.CCCgGaC.......ACCCCACT Medicago_truncatula_chr3.trna74-AsnATT Sc: 21.32  
>>>...>..>>>>...........<<<.<.>>>>>............<<<<<................>.>>>........<<<...<.......<...<<<.
GGGAGCTTAGCTTAGTTGGC.A..GAGaCATTGCATAATTT.....ATGCAGGG...........G.TCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr2.trna6-AsnATT Sc: 21.30  
>.>......>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<...........<.<.
GTGAGCATAGCTCAGTTGGT.A..GGA.TAATGCATTATTAtatatATGCAGGG...........G.TCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr3.trna71-AsnATT Sc: 21.22  
>.>...>...>>>...........<<<....>>>>............<<<<.................>.>>>........<<<...<.......<...<.<.
GTGAGCTTAGCTCAGTTGGT.A..GAG.ATATTGCATATTAta...TGCAGGA............G.CCGGGGTTCGAAC.CCC.G.G.......ACACTCCA Medicago_truncatula_chr0.trna8-AsnATT Sc: 21.20  
>>.>.....>.>>...........<<..<..>>.>............<.<<.................>.>>>........<<<...<..........<.<<.
GTGAGCATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATCCAGGG...........G.CCGGGGTTCGAAG.CCC.G.G.......ATGTAACG Medicago_truncatula_chr7.trna7-AsnATT Sc: 21.14  
>>>>>.>..>>>>...........<<<.<.>>>>>............<<<<<................>.>>>........<<<...<.......<.<<<<<.
GTGAGCTTAGCTCAGTTGGT.A..GGGaCATTGCATAATTT.....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.Gac.....ACCTCACT Medicago_truncatula_chr3.trna28-AsnATT Sc: 21.08  
.>>>>.>..>>>>...........<<<.<.>>>>>............<<<<<................>.>>>........<<<...<.......<.<<<<..
TGAGT.TTAGTTCAGTTGGT.Ag.GGA.CATTGCATAATTT.....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACTCCA Medicago_truncatula_chr6.trna14-AsnATT Sc: 20.91  
>.>.......>>>...........<<<....>>>>............<<<<.................>.>>>........<<<...<...........<.<.
GTGAGCATAGCTCAGTTGGC.A..GAG.ACATGCATTATTAt....ATGCAGGG...........G.CCGGGGTTCGAAC.CCC.G.G.......ACACCCCA Medicago_truncatula_chr7.trna5-AsnATT Sc: 20.81  
>>>>>....>>>>...........<<<.<..>>>>............<<<<.................>.>>>........<<<...<.........<<<<<.
GTGAGCATAGCTCAGTTGGC.A..GGGaCAATGCATTATTAt....ATGCAGGG...........GtCG.GGGTTCGAAT.CCCgGaC.......ACTTCACT Medicago_truncatula_chr7.trna36-AsnATT Sc: 20.62  
>>>.>....>.>>...........<<..<..>>>>............<<<<.................>.>.>........<.<...<.........<.<<<.
GTGAGCATAGCTCAGTTGGT.A..GAA.CAATGCATTATTAt....ATGCAGGG...........GtCG.GAGTTCGAAT.CCCgAaC.......ATCCTATA Medicago_truncatula_chr8.trna61-AsnATT Sc: 20.23  
>>.......>.>>...........<<..<..>>>>............<<<<.................>.>>>........<<<...<............<<.
GTGAACATAGCTCAGTTGGT.A..GGA.CAATGCATTATTAt....ATGCAGTG...........G.ACGGGGTTCGAAC.CCC.G.G............ACA Medicago_truncatula_chr1.trna32-AsnATT Sc: 20.23  
>>>>.>...>.>>...........<<..<.>>>>>............<<<<<................>...>........<.....<........<.<<<<.
GTGTGCATAACTCAGTTGGT.A..GGA.TAATGCATTATTAt....ATGCATGG...........GtCGGAGGTTCGAAT.C.....T.......CGGACACC Medicago_truncatula_chr4.trna48-AsnATT Sc: 20.09  

>>>>>>>..>>>>...........<<<.<.>>>>>............<<<<<................>>>>>........<<<.<.<.......<<<<<<<.
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAATC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna73-AsnGTT Sc: 83.25  
TCCTCAGTAGCTCAGT.GGT.A..GAG.CGGTCGGCTGTTA.....ACCGATTG...........GtCGTAGGTTCAAAT.CCT.A.C.......TTGAGGAG Medicago_truncatula_chr7.trna24-AsnGTT Sc: 82.49  
TCCTCAGTAGCTCAGT.GGT.A..GAG.CGGTCGGCTGTTA.....ACCGATTG...........GtCGTAGGTTCAAAT.CCT.A.C.......TTGGGGAG Medicago_truncatula_chr1.trna9-AsnGTT Sc: 81.75  
TCCTCAGTAGCTCAGT.GGT.A..GAG.CGGTCGGCTGTTA.....ACCGATTG...........GtCGTAGGTTCGAAT.CCT.A.T.......TTGGGGAG Medicago_truncatula_chr4.trna5-AsnGTT Sc: 80.72  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr8.trna79-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr8.trna14-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna89-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna88-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna72-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna30-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna24-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr4.trna103-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr3.trna118-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr2.trna57-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr2.trna50-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr2.trna44-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr2.trna33-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr2.trna27-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr2.trna18-AsnGTT Sc: 80.56  
GCTGGAATAGCTCAGATGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCGACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr8.trna24-AsnGTT Sc: 77.76  
GCTGGAATAGCTCAGTGGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr1.trna30-AsnGTT Sc: 77.00  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........G.TGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna101-AsnGTT Sc: 75.46  
GCTGGAATAGCTCAGTTGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTC.AAC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr5.trna55-AsnGTT Sc: 74.12  
>>>.>>>..>>>>...........<<<.<.>>>>>............<<<<<................>>>>>........<<<.<.<.......<<<.<<<.
GCTTGAATAGCTCAGTTGGTtA..GAG.TGTGTGGTTGTTA.....ACCACAAG...........GtTGGAGGTTCAACC.CCT.C.C.......TTCTAGCA Medicago_truncatula_chr6.trna28-AsnGTT Sc: 71.62  
>>.>>>>..>>>>...........<<<.<.>>>>>............<<<<<................>>>>>........<<<.<.<.......<<<<.<<.
GCAGGAATAGCTCAGTGGGTtA..GAG.CGTGTGGCTGTTA.....ACCACAAG...........GtCGGAGGTTCAACC.CCT.C.C.......TTCTAGCG Medicago_truncatula_chr1.trna28-AsnGTT Sc: 71.54  
>>>>>>>..>>>>...........<<<.<.>>>>>............<<<<<................>.>>>........<<<...<.......<<<<<<<.
TCCTTAGTAGCTCAGG.GGT.A..GAG.TGGTCGGCTGTTA.....ACCGATTG...........GtCGTAGGTTCAAAT.CCT.T.C.......TTGAGGAG Medicago_truncatula_chr7.trna65-AsnGTT Sc: 69.33  
>>>>>>>..>>>>...........<<<.<.>.>>>............<<<.<.................>>>>........<<<.<.........<<<<<<<.
GCTGGAATAGCTCAGTGGGTtA..GAG.CGTATGGTTGTTA.....ACCACAAG...........GtCAGAGGTTCAACC.CCT.C.C.......TTTTAGCG Medicago_truncatula_chr1.trna29-AsnGTT Sc: 62.49  
>>>>>.>..>>>>...........<<<.<.>>.>>............<<.<<................>>>>>........<<<.<.<.......<.<<<<<.
TCCTCAGTAGCTCAGT.GGT.A..GAG.TGGTCGGCTGTTA.....ACCAATTG...........AtCGTAGGTTTGAAT.CCT.A.T.......TAGGGGAG Medicago_truncatula_chr5.trna69-AsnGTT Sc: 59.59  
>>>>>>>..>>.>...........<.<.<.>>>>>............<<<<<................>>>>>........<<<.<.<.......<<<<<<<.
GAACAAATGGCATAGT.GGT.A..GAG.CTTATTGTTGTTA.....TTAATGTG...........GtCATGGGTTCAACT.TTC.A.Tgact...TTTGTTCT Medicago_truncatula_chr2.trna60-AsnGTT Sc: 22.14  
>>>.>.....>>>...........<<<....>>>>............<<<<.................>.>>>........<<<...<.........<.<<<.
GTGAGCATAACTCAGTTGGC.A..GAG.ACATGCACTGTTAt....ATGCAGGG...........GtCG.GGGTTCGAAC.CCCgGaC.......ACTCCACT Medicago_truncatula_chr3.trna103-AsnGTT Sc: 20.02  





Asp tRNAs




>>>..>>..>.>>..........<<.<..>>>>........<<<<....................>>.......<<...<<..<<<.
GTGAGCATAGCTCAGTTGGT.A.GGACAATGCATTATCAtATGCAGGG...........G.CCGGGGTTCGAACCC...TGGACACC Medicago_truncatula_chr5.trna90-AspATC Sc: 22.11  

>>>>>>>..>>>>..........<<<<.>>>>>........<<<<<................>>>>>.......<<<<<<<<<<<<.
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr8.trna23-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr7.trna56-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr5.trna16-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr4.trna36-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr3.trna77-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr3.trna51-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr3.trna42-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr3.trna34-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr1.trna69-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr1.trna18-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr0.trna13-AspGTC Sc: 69.46  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr7.trna38-AspGTC Sc: 68.28  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr5.trna39-AspGTC Sc: 68.28  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr4.trna51-AspGTC Sc: 68.28  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr4.trna50-AspGTC Sc: 68.28  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr3.trna24-AspGTC Sc: 68.28  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr0.trna18-AspGTC Sc: 68.28  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCAATCCCCGGCAGCGGCG Medicago_truncatula_chr1.trna35-AspGTC Sc: 66.54  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGTGGGTG...........A.CCCGGGTTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr5.trna86-AspGTC Sc: 63.70  
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCTCGGCAGCGGCG Medicago_truncatula_chr7.trna29-AspGTC Sc: 62.95  
GGGATTGTAGTTCAATTGGTcA.GAGCACCGCCCTGTCA.AGGCGGAA...........GcTGCGGGTTCGAGTCCCGTCAGTCCCG Medicago_truncatula_chr5.trna64-AspGTC Sc: 62.76  
GGGATTGTAGTTCAATTGGTcA.GAGCACCGCCCTGTCA.AGGCGGAA...........GcTGCGGGTTCGAGTCCCGTCAGTCCCG Medicago_truncatula_chr4.trna91-AspGTC Sc: 62.76  
GGGATTGTAGTTCAATCGGTcA.GAGCACCGCCCTGTCA.AGGCGGAA...........GcTGCGGGTTCGAGCCCCGTCAGTCCCG Medicago_truncatula_chr1.trna1-AspGTC Sc: 60.73  
>>>>>>>..>>>>..........<<<<.>>>>>........<<<<<................>>>>.........<<<<<<<<<<<.
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CGCGGGTG...........A.CCCGGATTCGATCCCCGGCAGCGGCG Medicago_truncatula_chr2.trna38-AspGTC Sc: 60.38  
>>>>>>>..>>>>..........<<<<.>>>>..........<<<<................>>>>>.......<<<<<<<<<<<<.
GTTGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CACGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr3.trna31-AspGTC Sc: 58.74  
>>>>>>>..>>>>..........<<<<.>>>.>........<.<<<................>>>>>.......<<<<<<<<<<<<.
GTTGTTGTAGTATAGT.GGTaA.GTATTCCCACCTGTCA.CGCGGGTG...........A.CCCGGGTTCGATCCCCGGCAACGGCG Medicago_truncatula_chr1.trna63-AspGTC Sc: 58.72  
>>>>>>>..>>>>..........<<<<.>>>>>........<<<<<.................>>>>.......<<<<.<<<<<<<.
GTCGTTGTAGTATAGT.GGTaA.GTATTCCTGCCTGTCA.TGCGGGTG...........A.CCCGGGTTTGATCCCCGACAGCGGCG Medicago_truncatula_chr5.trna85-AspGTC Sc: 49.01  
>>>>>>>..>>>>..........<<<<.>>>>..........<<<<................>>.>>.......<<.<<<<<<<<<.
GTCGTTGTAGTATAGT.GGTaA.GTATTCCCGCCTGTCA.CCCGGGTG...........A.CCCAGGTTTGATCCCCGGCAGCGGCG Medicago_truncatula_chr1.trna36-AspGTC Sc: 48.41  
>>>>>>>..>>>>..........<<<<.>>>>>........<<<<<................>>>.>.......<.<<<<<<<<<<.
GTTGTTGTAGTATAGT.GGTaA.GTATTCCCGTCTGTCA.CGCGGGTG...........A.CCTGAGTTTGATCCCTGGCAACGGCG Medicago_truncatula_chr3.trna50-AspGTC Sc: 35.89  
>>>>>>>..>>>>..........<<<<.>>>.>........<.<<<...................>>.......<<...<<<<<<<.
GTTGTTGTAGTATAGT.GGTaA.GTATTTCCATCTGTCA.TGCGGGTG...........AtC.CGGGTTCAATCCC...CAACAGCG Medicago_truncatula_chr0.trna2-AspGTC Sc: 30.19  





Cys tRNAs




>>>...>..>>>>..........<<<<..>>.>.......<.<<..................>>>>.............<<<<.<...<<<.
GGGATTGTAGCTCATAGGAttA.GAGCACGTAGCTACAAACCACAAT...........GtCAGGGGTTTGAAT......CCCTCCTCATCCA Medicago_truncatula_chr1.trna59-CysACA Sc: 25.10  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.............<<<<<<<<<<<<.
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr7.trna55-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr5.trna91-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr5.trna114-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr4.trna45-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr1.trna66-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr1.trna43-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr1.trna23-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGAAC......CCGGTTGGGCCCT Medicago_truncatula_chr1.trna22-CysGCA Sc: 78.18  
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACCGGTTCGATA......CCGGTTGGGCCCT Medicago_truncatula_chr1.trna58-CysGCA Sc: 76.74  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>.................<<<<<<<<<<.
GGGTCCATAGCTCAGTGGT..A.GAGCATTTGACTGCAGATCAAGAG...........GtCACC.................GGTTGGGCCCT Medicago_truncatula_chr7.trna48-CysGCA Sc: 38.01  





Gln tRNAs




>>>>>>>..>>>>.........<<<<.>>>>>................<<<<<..................>>>>>.......<<<<<..<<<<<<<.
GGTCCCATGGTCTAGCGGTtA.GGACATCAGACTCTGA.........ATCTGGTA.............A.CCCGAGTTCAATTCTCGG..TGGGACCT Medicago_truncatula_chr4.trna15-GlnCTG Sc: 70.82  
GGTCCCATGGTCTAGCGGTtA.GGACATTGGACTCTGA.........ATCCAGTA.............A.CCCGAGTTCAAGTCTCGG..TGGGACCT Medicago_truncatula_chr5.trna14-GlnCTG Sc: 69.91  
GGTCCCATGGTCTAGCGGTtA.GGACATTGGACTCTGA.........ATCCAGTA.............A.CCCGAGTTCAAGTCTCGG..TGGGACCT Medicago_truncatula_chr3.trna63-GlnCTG Sc: 69.91  
GGTCCCATGGTCTAGCGGTtA.GGACATTGGACTCTGA.........ATCCAGTA.............A.CCCGAGTTCAAGTCTCGG..TGGGACCT Medicago_truncatula_chr2.trna5-GlnCTG Sc: 69.91  
GGTCCCATGGTCTAGCGGTtA.GGACATCAGACTCTGA.........ATCTGGTA.............A.CCCGAGTTCAATTCTCGG..TGGGGCCT Medicago_truncatula_chr3.trna91-GlnCTG Sc: 67.69  

>>>>>>>..>>>>.........<<<<.>>>>>................<<<<<..................>>>>>.......<<<<<..<<<<<<<.
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAGCG.............A.CCTGGGTTCGACTCCCGG..TAGGACCT Medicago_truncatula_chr7.trna30-GlnTTG Sc: 74.09  
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAGCG.............A.CCTGGGTTCGACTCCCGG..TAGGACCT Medicago_truncatula_chr7.trna19-GlnTTG Sc: 74.09  
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAGCG.............A.CCTGGGTTCGACTCCCGG..TAGGACCT Medicago_truncatula_chr5.trna25-GlnTTG Sc: 74.09  
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAGCG.............A.CCTGGGTTCGACTCCCGG..TAGGACCT Medicago_truncatula_chr4.trna63-GlnTTG Sc: 74.09  
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAGCG.............A.CCTGGGTTCGACTCCCGG..TAGGACCT Medicago_truncatula_chr3.trna92-GlnTTG Sc: 74.09  
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAGCG.............A.CCTGGGTTCGACTCCCGG..TAGGACCT Medicago_truncatula_chr1.trna61-GlnTTG Sc: 74.09  
>>>>>>>..>>>>.........<<<<..>>>>................<<<<...................>>>>>.......<<<<<..<<<<<<<.
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAACG.............A.CCTGGGTTCGACTCCCGG..TAGGACCT Medicago_truncatula_chr4.trna66-GlnTTG Sc: 67.42  
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAATG.............A.CCTGGGTTTGACTCCCGG..TAGGACCT Medicago_truncatula_chr1.trna60-GlnTTG Sc: 61.96  
GGTTCTATGGTGTAGTGGTtA.GCACTCTGGACTTTGA.........ATCCAATG.............A.CCTGGGTTTGACTCCCGG..TAGGACCT Medicago_truncatula_chr1.trna21-GlnTTG Sc: 61.96  
>>>>>>>..>>>...........<<<.>>>>>................<<<<<..................>>>>>.......<<<<<..<<<<<<<.
TGGGGCGTGGCCAAGCGGT.A.AGGCGACGGGTTTTGG.........TCCCGTTA.............TtCGAAGGTTCGAATCCTTC..CGTCCCAG Medicago_truncatula_chr8.trna19-GlnTTG Sc: 60.45  
TGGAGTATAGCCAAGTGGT.A.AGGCATCGGTTTTTGG.........TACCGGC.AT...........G.CAAAGGTTCGAATCCTTT..TACTCCAG Medicago_truncatula_chr1.trna90-GlnTTG Sc: 51.09  
TGGAGTATAGCCAAGTGGT.A.AGGCATCGGTTTTTGG.........TACCGGC.AT...........G.CAAAGGTTCGAATCCTTT..TACTCCAG Medicago_truncatula_chr1.trna80-GlnTTG Sc: 51.09  
TGGAGTATAGCCAAGTGGT.A.AGGCATCGGTTTTTGG.........TACCGGC.AT...........G.CAAAGGTTCGAATCCTTT..TACTCCAG Medicago_truncatula_chr1.trna77-GlnTTG Sc: 51.09  
TGGAGTATAGCCAAGTGGT.A.AGGCATCGGTTTTTGG.........TACCGGC.AT...........G.CAAAGGTTCGAATCCTTT..TACTCCAG Medicago_truncatula_chr1.trna5-GlnTTG Sc: 51.09  
TGGAGTATAGCCAAGTGGT.A.AGGCATCGGTTTTTGG.........TACCGGC.AT...........G.CAAAGGTTCGAATCCTTT..TACTCCAG Medicago_truncatula_chr1.trna34-GlnTTG Sc: 51.09  
>.>>>>>..>>>...........<<<.>>>>>................<<<<<...................>>>>.......<<<<...<<<<<.<.
TGGGGCGTGGCCAAGTGGT.A.AGGCAACGGGTTTTGG.........TCCCGTTA.............TtCAGAGGTTCGAACCCTTC..CGTCCGAG Medicago_truncatula_chr4.trna2-GlnTTG Sc: 45.66  
>>>>>>>..>>>...........<<<.>>>>>................<<<<<..................>>>>>.......<<<<<..<<<<<<<.
TGGGGTGTGGCCAAGCGGT.A.AGGCGACGGGTTTTGG.........TTCTGTTA.............TtCGAAGGTTTGAATCCTTT..CGTCCCAG Medicago_truncatula_chr3.trna39-GlnTTG Sc: 37.71  
.>>>>>>..>>.>.........<.<<..>.>..................<.<...................>>>.>.......<.<<<..<<<<<<..
GAAGGCTTGGTCTAGTGGT.A.AAACAACAGGCCTTGA.........AACCGAAA.............GtCACGGGTTCGAGCCACGT..AGTTTTGA Medicago_truncatula_chr4.trna78-GlnTTG Sc: 29.92  
>>>.>>...>>>...........<<<.>.>>>................<<<.<....................>>>.......<<<.....<<.<<<.
TGGGGT.TGGCCTAGTGGT...TGGCTTGGGATCTTGGagtttgctcCTCCAAAG.............GtCTCAGGTTCGATTCCTTCt.GGTGCCAA Medicago_truncatula_chr5.trna78-GlnTTG Sc: 21.59  
>>>.>>...>>>...........<<<.>>>>>................<<<<<..................>.>>>.......<<<.<...<<.<<<.
TGGGGT.TGGTCTAGTGGT...TGGTTTGGGATTTTGGagtttgctcCTCTCAAG.............GtCTCGGGTTCGATTCCCTGt.GGTGCCAA Medicago_truncatula_chr7.trna11-GlnTTG Sc: 21.47  





Glu tRNAs




>>>>>>>..>>>>...........<<<<.>>>>>.................<<<<<..................>>>>>.......<<<<<...<<<<<<<.
TCCGTTGTAGTCTAGTTGGTt.A.GGATACTCGGCTCTCA..........CCCGAGAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr7.trna46-GluCTC Sc: 79.78  
TCCGTTGTAGTCTAGTTGGTc.A.GGATACTCGGCTCTCA..........CCCGAGAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr8.trna9-GluCTC Sc: 77.70  
TCCGTTGTAGTCTAGTTGGTc.A.GGATACTCGGCTCTCA..........CCCGAGAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr4.trna74-GluCTC Sc: 77.70  
TCCGTTGTAGTCTAGTTGGTc.A.GGATACTCGGCTCTCA..........CCCGAGAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr4.trna53-GluCTC Sc: 77.70  
TCCGTTGTAGTCTAGTTGGTc.A.GGATACTCGGCTCTCA..........CCCGAGAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr4.trna35-GluCTC Sc: 77.70  
TCCGTTGTAGTCTAGTTGGTc.A.GGATACTCGGCTCTCA..........CCCGAGAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr4.trna34-GluCTC Sc: 77.70  
TCCGTTGTAGTCTAGTTGGTc.A.GGATATTCGGCTCTCA..........CCCGAAAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr8.trna17-GluCTC Sc: 77.31  
TCCGTTGTAGTCTAGTTGGTc.A.GGATATTCGGCTCTCA..........CCCGAAAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr8.trna16-GluCTC Sc: 77.31  
TCCGTTGTAGTCTAGTTGGTc.A.GGATATTCGGCTCTCA..........CCCGAAAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr5.trna7-GluCTC Sc: 77.31  
TCCGTTGTAGTCTAGTTGGTc.A.GGATATTCGGCTCTCA..........CCCGAAAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr5.trna6-GluCTC Sc: 77.31  
TCCGTTGTAGTCTAGTTGGTc.A.GGATATTCGGCTCTCA..........CCCGAAAG.............A.CCCGGGTTCAAGTCCCGG...CAACGGAA Medicago_truncatula_chr5.trna37-GluCTC Sc: 77.31  

>>>>>>>..>>>>...........<<<<.>>>>>.................<<<<<..................>>>>>.......<<<<<...<<<<<<<.
TCCATTGTCGTCCAGC.GGTt.A.GGATGTCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr5.trna105-GluTTC Sc: 74.39  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr8.trna78-GluTTC Sc: 72.67  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr8.trna30-GluTTC Sc: 72.67  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr5.trna59-GluTTC Sc: 72.67  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr5.trna51-GluTTC Sc: 72.67  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr5.trna50-GluTTC Sc: 72.67  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr5.trna102-GluTTC Sc: 72.67  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr4.trna82-GluTTC Sc: 72.67  
TCCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CAATGGAA Medicago_truncatula_chr1.trna50-GluTTC Sc: 72.67  
TCCGATGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CATCGGAA Medicago_truncatula_chr3.trna62-GluTTC Sc: 72.52  
TCCGATGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTTCGATTCCCGG...CATCGGAA Medicago_truncatula_chr3.trna108-GluTTC Sc: 72.52  
>>>.>>>..>>>>...........<<<<.>>>.>.................<.<<<..................>>>>>.......<<<<<...<<<.<<<.
GTCGCTTTCGTCCAGT.GGTt.A.GGACATCGTCTTTTCA..........TGTCGAAG.............A.CACGGGTTCGATTCCCGT...AAGGGATG Medicago_truncatula_chr1.trna86-GluTTC Sc: 60.38  
>>>>>>>..>>>>...........<<<<.>>>>>.................<<<<<..................>>>>>.......<<<<<...<<<<<<<.
GCCCCCATCGTCTAGT.GGTttA.GGACATCTCTCTTTCA..........AGGAGGCA.............A.CGGGGATTCGACTTCCCC...TGGGGGTA Medicago_truncatula_chr5.trna62-GluTTC Sc: 52.35  
GCCCCCATCGTCTAGT.GGTttA.GGACATCTCTCTTTCA..........AGGAGGCA.............A.CGGGGATTCGACTTCCCC...TGGGGGTA Medicago_truncatula_chr4.trna89-GluTTC Sc: 52.35  
GCCCCCATCGTCTAGT.GGTttA.GGACATCTCTCTTTCA..........AGGAGGCA.............A.CGGGGATTCGACTTCCCC...TGGGGGTA Medicago_truncatula_chr4.trna8-GluTTC Sc: 52.35  
>>>>>>>..>>>>...........<<<<.>>>>>.................<<<<<..................>>.>>.......<<.<<...<<<<<<<.
TTCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTACGATTCCAGG...CAATGGAA Medicago_truncatula_chr6.trna25-GluTTC Sc: 52.06  
TTCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTACGATTCCAGG...CAATGGAA Medicago_truncatula_chr6.trna24-GluTTC Sc: 52.06  
TTCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTACGATTCCAGG...CAATGGAA Medicago_truncatula_chr0.trna4-GluTTC Sc: 52.06  
TTCATTGTCGTCCAGC.GGTt.A.GGATATCTGGCTTTCA..........CCCAGGAG.............A.CCCGGGTACGATTCCAGG...CAATGGAA Medicago_truncatula_chr0.trna3-GluTTC Sc: 52.06  
>.>>.>...>>>>...........<<<<.>>>.>.................<.<<<..................>.>>>.......<<<.<....<.<<.<.
GTCAAG.TAGTTTAGT.GGTt.A.AAATTCACCTTTTTCAaggtaaa...TAAGTGAGGT...........GtCCGGGGTTCGAATCCCGGc..CCCTG.CA Medicago_truncatula_chr8.trna50-GluTTC Sc: 24.34  
>.>>>....>>>>...........<<<<.>>>>...................<<<<..................>.>.>.......<.<.<.....<<<.<.
TCCAG..TAGTTTAGT.GGTt.A.GAATTCTCCTTTTTCAaaaagaagaaGTGGAGT..............GtCCGGAGTTCGAACCCCGG.c.CCCTGTAT Medicago_truncatula_chr8.trna40-GluTTC Sc: 22.18  
>....>>..>>.>...........<.<<.>.>>...................<<.<..................>.>>>.......<<<.<...<<....<.
GGTTAGGTAGTCTAGT.GGTt.A.GAATTCACCTTTTTCAaggttaataaGTGGGGTG.............A.CCGGGGTTCGAACCCCGG...CCCCTGCA Medicago_truncatula_chr7.trna2-GluTTC Sc: 21.77  





Gly tRNAs




>>.>..>..>>>>..........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<..<.<<.
GGTCCTGTAGCTCAGAGGAttA.GAGCACGTGGCTACCAACCACGGT...........GtCG.GGGTTCGAATCCCTCCTCGCCCA Medicago_truncatula_chr5.trna44-GlyACC Sc: 47.88  

>>>>>>>..>>.>..........<.<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr8.trna2-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr7.trna18-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr5.trna79-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr5.trna48-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr5.trna47-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr5.trna15-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr4.trna81-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr4.trna22-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna7-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna6-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna4-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna3-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna29-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna27-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna2-GlyGCC Sc: 71.56  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CCCGGGTTCGATTCCCGGCTGGTGCA Medicago_truncatula_chr3.trna1-GlyGCC Sc: 71.56  
>>>>>>...>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<.
GCGGAAATAGCTTAATGGT..A.GAGCATAGCCTTGCCAAGGCTGAG...........GtTGAGGGTTCAAGTCCCTCCTTCCGCT Medicago_truncatula_chr1.trna89-GlyGCC Sc: 59.63  
GCGGAAATAGCTTAATGGT..A.GAGCATAGCCTTGCCAAGGCTGAG...........GtTGAGGGTTCAAGTCCCTCCTTCCGCT Medicago_truncatula_chr1.trna76-GlyGCC Sc: 59.63  
GCGGAAATAGCTTAATGGT..A.GAGCATAGCCTTGCCAAGGCTGAG...........GtTGAGGGTTCAAGTCCCTCCTTCCGCT Medicago_truncatula_chr1.trna4-GlyGCC Sc: 59.63  
GCGGAAATAGCTTAATGGT..A.GAGCATAGCCTTGCCAAGGCTGAG...........GtTGAGGGTTCAAGTCCCTCCTTCCGCT Medicago_truncatula_chr1.trna33-GlyGCC Sc: 59.63  
>>>>>>>..>>.>..........<.<<.>>>.>.......<.<<<................>>>>>.......<<<<<<<<<<<<.
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGCTACAG...........A.CCCGGGTTCAATTCCTGGCTGGTGCA Medicago_truncatula_chr8.trna11-GlyGCC Sc: 57.63  
GCACCAGTGGTCTAGTGGT..A.GAATAGTACCCTGCCACGCTACAG...........A.CCCGGGTTCAATTCCTGGCTGGTGCA Medicago_truncatula_chr3.trna16-GlyGCC Sc: 57.63  
>>>..>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<..<<<.
GCACAAGTGGTTTAATGGT..A.GAATAGTACCCTGCCACGGTACAG...........A.CTTGGGTTTGATTCCTGGCTGCTGCA Medicago_truncatula_chr3.trna26-GlyGCC Sc: 38.33  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCGCATCTGGTGTAGTGGT..A.TCATAGTACCCTCCCACGGTACTG...........A.CCAGGGTTCGATTCCCTGGATGCGCA Medicago_truncatula_chr7.trna53-GlyCCC Sc: 68.50  
GCGCATCTGGTGTAGTGGT..A.TCATAGTACCCTCCCACGGTACTG...........A.CCAGGGTTCGATTCCCTGGATGCGCA Medicago_truncatula_chr2.trna24-GlyCCC Sc: 68.50  
GTGCATCTGGTGTAGTGGC..A.TCATAGTACCCTCCCACGGTACGG...........A.CCAGGGTTCGATTCCCTGGATGTGCA Medicago_truncatula_chr2.trna7-GlyCCC Sc: 56.48  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr5.trna97-GlyTCC Sc: 74.33  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr5.trna56-GlyTCC Sc: 74.33  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr4.trna33-GlyTCC Sc: 74.33  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr3.trna47-GlyTCC Sc: 74.33  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr3.trna40-GlyTCC Sc: 74.33  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr2.trna32-GlyTCC Sc: 74.33  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr0.trna17-GlyTCC Sc: 74.33  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.TCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr2.trna71-GlyTCC Sc: 71.66  
GTGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTCGACTCCCGGCAAACGCA Medicago_truncatula_chr5.trna98-GlyTCC Sc: 68.62  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCCGGGTTTGACTCCCGGCAAACGCA Medicago_truncatula_chr2.trna48-GlyTCC Sc: 67.41  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCTGGGTTCGACTCCTGGCAAACGCA Medicago_truncatula_chr4.trna67-GlyTCC Sc: 63.04  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCTGGGTTCGACTCCTGGCAAACGCA Medicago_truncatula_chr4.trna39-GlyTCC Sc: 63.04  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCTGGGTTCGACTCCTGGCAAACGCA Medicago_truncatula_chr4.trna38-GlyTCC Sc: 63.04  
GCGTTTGTAGTCCAACGGTt.A.GGATAATTGCCTTCCAAGCAATAG...........A.CCTGGGTTCGACTCCTGGCAAACGCA Medicago_truncatula_chr4.trna37-GlyTCC Sc: 63.04  
>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.
GTGCATCTGGTGTAGACGT..A.TCATAGTACCCTTCCACGGTGCTG...........A.CCAGGGTTCGATTCCCTGGATGCGCA Medicago_truncatula_chr7.trna54-GlyTCC Sc: 46.91  





His tRNAs





>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<.<<<<<<<.
GTGGCTGTAGTTTAGTGGTg.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr8.trna48-HisGTG Sc: 63.70  
GTGGCTGTAGTTTAGTGGTg.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr2.trna62-HisGTG Sc: 63.70  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr8.trna74-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr8.trna63-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr8.trna49-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr7.trna57-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr4.trna62-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr4.trna61-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr4.trna28-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr3.trna44-HisGTG Sc: 62.38  
GTGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCCGTGGAG.............ACCTGGGCTCGAATCCCAG.CAGCCACA Medicago_truncatula_chr2.trna2-HisGTG Sc: 62.38  
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<.<<<<<<<.
GCGGATGTAGCCAAGTGGAtcA.AGGCAGTGGATTGTGAATCCACC.AT...........GCGCGGGTTCAATTCCCGT.CATTCGCC Medicago_truncatula_chr7.trna74-HisGTG Sc: 53.21  
GCGGATGTAGCCAAGTGGAtcA.AGGCAGTGGATTGTGAATCCACC.AC...........GCGCGGGTTCAATCCCCGT.CGTTCGCC Medicago_truncatula_chr1.trna88-HisGTG Sc: 50.71  
GCGGATGTAGCCAAGTGGAtcA.AGGCAGTGGATTGTGAATCCACC.AC...........GCGCGGGTTCAATCCCCGT.CGTTCGCC Medicago_truncatula_chr1.trna2-HisGTG Sc: 50.71  
GCGGATGTAGCCAAGTAGAtcA.AGGCAGTGGATTGTGAATCCACC.AT...........GCGCGGGTTCAATTCCCGT.CATTCGCC Medicago_truncatula_chr8.trna33-HisGTG Sc: 45.29  
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.................>.>>>.......<<<.<.<<<<<<<.
GCGGATGTAGCCAAGTGGAtcA.AGGCAGTGGATTGTGAATTCACC.AT...........GCGCGGGTTCAATTCCCAT.CATTTGCC Medicago_truncatula_chr5.trna1-HisGTG Sc: 40.58  
>.>>.>>..>>>>..........<<<<.>>>>>.......<<<<<.................>>>>>.......<<<<<.<<.<<.<.
GCGGCTGTAGTTTAGTGGTa.A.GAATTCCACGTTGTGGCTGTGGAG.............ACCTGGGCTTGAATCCCAG.CACCCACA Medicago_truncatula_chr3.trna53-HisGTG Sc: 39.96  
>..>>>>..>>>>..........<<<<.>>.............<<.................>>.>>.......<<.<<.<<<<..<.
GCTGCTGTAGTTTAGTGGTa.A.GAATTCCACATTGTGGCCCAGGAG.............ACCTGGGCTCGAATCCAAG.CAGCCACA Medicago_truncatula_chr3.trna54-HisGTG Sc: 30.60  





Ile tRNAs




>>>>>>>..>>.....>>..........<<<<.>>>>>................<<<<<...................>>...>>>.......<<<.<<.<<<<<<<.
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr7.trna9-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr7.trna8-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr7.trna37-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr5.trna74-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr5.trna110-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr5.trna103-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr4.trna41-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr4.trna40-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr4.trna14-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr3.trna73-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr2.trna45-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr2.trna10-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr0.trna22-IleAAT Sc: 86.52  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAGACCT.GC.ATGGGCCA Medicago_truncatula_chr5.trna96-IleAAT Sc: 84.87  
GGCCCATTAGC.....TCAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtCGC...AGGTTCGAGACCT.GC.ATGGGCCA Medicago_truncatula_chr5.trna95-IleAAT Sc: 84.87  
GGCCCATTAGC.....TTAGTTGGTtA.GAGCGTCGTGCTAATA.........ACGTGAAG..............GtCGC...AGGTTCGAAACCT.GC.ATGGGCCA Medicago_truncatula_chr1.trna56-IleAAT Sc: 78.92  
>>>>>>>...>.....>>..........<<<..>>>>>................<<<<<...................>>...>>>.......<<<.<<.<<<<<<<.
GGCCCATTAAC.....TTAGTGGGTtA.GAGCGTCGTGCTAATA.........ACGCGAAG..............GtTGC...AGGTTCGAGACCT.GC.ATGGGCCA Medicago_truncatula_chr1.trna65-IleAAT Sc: 69.78  
>>>>>>>..>>.....>>..........<<<<.>>>>..................<<<<...................>>...>>>.......<<<.<<.<<<<<<<.
GGCCTATTAGC.....TCAATTGGTtA.GAGTGTGGTGCTAATA.........AGGTCAAG..............GtCGC...AGGTTCGAGACCT.GC.ATGGGCCA Medicago_truncatula_chr1.trna37-IleAAT Sc: 64.53  
>>>......>......>>..........<<.<.>>>>>................<<<<<...................>....>>>.......<<<..<.....<<<.
GTGAGCTTAGC.....TCAGTTGGTaA.GAACCTTGCATTAATAt........ATGCAAG...............GtCCG...GGGTTCAAACCCC.GG.CCACCATA Medicago_truncatula_chr4.trna25-IleAAT Sc: 25.79  
GTGAGCTTAGC.....TCAGTTGGTaA.GAACCTTGCATTAATAt........ATGCAAG...............GtCCG...GGGTTCAAACCCC.GG.CCACCATA Medicago_truncatula_chr1.trna57-IleAAT Sc: 25.79  
>>>>>.>..>>......>..........<.<<.>>.>>................<<.<<....................>...>>>.......<<<.<..<.<<<<<.
GGTTGTATAGCgtgctCCAGC.GGTtA.G.GCATATGCCTAATA.........AGCCTAC.TT............GtTTT...AGGTTCAACTCCT.GC.TTCGACCT Medicago_truncatula_chr5.trna115-IleAAT Sc: 21.73  
>>>......>......>>..........<<.<..>>>>................<<<<....................>....>>>.......<<<..<.....<<<.
GTGAGCTTAGC.....TCAGTTGGTaA.GGACAATGCATTAATAt........ATGCAAGG..............G.CCG...GGGTTCAAACCCC.GG.CCACCACC Medicago_truncatula_chr5.trna5-IleAAT Sc: 20.48  
>>>...>...>.....>>..........<<<..>..>>................<<..<...................>....>>>.......<<<..<.<...<<<.
GTGAGCTTGAC.....TTAGTTGGT.A.AGGACAATGCATAATA.........TGC..TAG..............GtCCG...GGGTTCGAACCCC.GG.ACACCACA Medicago_truncatula_chr1.trna41-IleAAT Sc: 20.08  


>>>>>>>..>>.....>>..........<<<<.>>>>>................<<<<<...................>>...>>>.......<<<.<<.<<<<<<<.
GGTCCCGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr8.trna73-IleTAT Sc: 85.40  
GGTCCCGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr5.trna13-IleTAT Sc: 85.40  
GGTCCCGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr4.trna102-IleTAT Sc: 85.40  
GGTCCCGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr4.trna100-IleTAT Sc: 85.40  
GGTCCCGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr2.trna9-IleTAT Sc: 85.40  
GGTCCCGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr1.trna48-IleTAT Sc: 85.40  
GGTCCCGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr0.trna14-IleTAT Sc: 85.40  
GGTCCTGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr4.trna99-IleTAT Sc: 83.51  
GGTCCTGTAGC.....TCAGTTGGTtA.GAGCGTTGGTCTTATG.........AGCCGAAG..............GtCGC...GGGTTCGAGCCCC.GC.CGGGACCA Medicago_truncatula_chr4.trna101-IleTAT Sc: 83.51  
.>>>.>>..>......>>..........<<.<.>>>....................<<<...................>....>>>.......<<<..<.<<.<<<..
TCAGAGGTAGC.....TTAGT.GGCtA.GAATTCAC..CTTATAaggtgaataA..GTGGGGT............GtTCG...GGGTTCGAACCCC.GG.CCCCTGCA Medicago_truncatula_chr4.trna29-IleTAT Sc: 22.86  
>>>...>...>.....>............<<..>>..>................<..<<...................>>...>>>.......<<<.<<.<...<<<.
GCGAGCTTAAC.....TCAGTTGGT.A.AAG.ATA..ATTTATA.........ATG.TATGCATG..........AtCCT...GAGTTCGAATCTC.AG.ACACCGCC Medicago_truncatula_chr8.trna7-IleTAT Sc: 22.40  
.>>>.>>..>.......>..........<..<.>>>....................<<<...................>....>>>.......<<<..<.<<.<<<..
TCAGAGGTAGC.....CTAGT.GGCtA.GAATTCAC..CTTATAaggtgaataA..GTGGGGT............GtCCG...GGGTTCGAACCCC.GG.CCCCTGCA Medicago_truncatula_chr7.trna16-IleTAT Sc: 20.96  
>....>>..>>.....>>..........<<<<.>>>....................<<<...................>....>>>.......<<<..<.<<....<.
GGTCAGGTAGT.....TTAGT.GGTtA.GAATTCAC..CTTATAaggtgaataA..GTGGGGGT...........GtCCG...GGGTTCGAACCTC.AG.CCCCTGCA Medicago_truncatula_chr8.trna77-IleTAT Sc: 20.52  
>.>.>>>..>>.....>>..........<<<<.>>>....................<<<...................>>...>>>.......<<<.<<.<<<.<.<.
TTCCAGATAGT.....TTAGT.GGTtA.GAATTCAC..CTTATAaggtgaataA..GTGGG..............G.TGTctgGGGTTCGAACCCCgAC.TCTTGCAT Medicago_truncatula_chr3.trna12-IleTAT Sc: 20.17  





Leu tRNAs




>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>................<<...>>>>>.......<<<<<....<<<<<<<.
GTTGAGATGGCCGAGTTGGTctA..AGGCGCCAGATTAAGG......TTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....TCTCAACA Medicago_truncatula_chr7.trna45-LeuAAG Sc: 69.68  
GTTGAGATGGCCGAGTTGGTctA..AGGCGCCAGATTAAGG......TTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....TCTCAACA Medicago_truncatula_chr7.trna23-LeuAAG Sc: 69.68  
GTTGATATGGCCGAGTTGGTctA..AGGCGCCAGATTAAGG......TTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....TGTCAACA Medicago_truncatula_chr7.trna22-LeuAAG Sc: 68.09  
GTTGATATGGCCGAGTTGGTctA..AGGCGCCAGATTAAGG......TTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....TGTCAACA Medicago_truncatula_chr7.trna21-LeuAAG Sc: 68.09  
GTTGATATGGCCGAGTTGGTctA..AGGCGCCAGATTAAGG......TTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....TGTCAACA Medicago_truncatula_chr3.trna52-LeuAAG Sc: 68.09  
>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>.>............<.<<...>>>>>.......<<<<<....<<<<<<<.
GTTGAGATGGCCGAGTTGGTctA..AGGCGCCAGATTAAGG......TTCTGGT.CCGA............TAGGG.TGTGGGTTCAAATCCCAC....TCTCAACA Medicago_truncatula_chr2.trna58-LeuAAG Sc: 67.01  
>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>................<<...>>>>>.......<<<<<....<<<<<<<.
GTTGAGATGGCCGAGTTGGTctA..AGGCGTCAGATTAAGG......TTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....TCTCAACA Medicago_truncatula_chr1.trna73-LeuAAG Sc: 66.33  
>>>>>>>..>>>..............<<<.>>>>>.............<<<<<.........................>>>>>.......<<<<<....<<<<<<<.
GGGCATTTGGTCTAGT.TGT..A..TGATTCTCGCTTAAGG......TGCGAGAG....................GtCCCGAGTTCAATTCTCGG....AATGCCCC Medicago_truncatula_chr7.trna35-LeuAAG Sc: 63.88  
>>>>>>>..>>>..............<<<.>>.>>.............<<.<<..>>>..............<<<...>>>>>.......<<<<<....<<<<<<<.
GTTGAGATGGCCGAGTTGGTctA..AGGCGCCCGATTAAGG......TTCTGGT.CTAA............ATGGG.TGTGGGTTCAAATCCCGC....TCTCAACA Medicago_truncatula_chr1.trna15-LeuAAG Sc: 58.62  


>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>................<<...>>>>>.......<<<<<....<<<<<<<.
GTCAAGATGGCCGAGTTGGTctA..AGGCGCCAGTTTCAGG......TACTGGT.CCGA............AAGGG.CATGGGTTCGAATCCCAT....TCTTGACA Medicago_truncatula_chr8.trna59-LeuCAG Sc: 68.57  
GTCAAGATGGCCGAGTTGGTctA..AGGCGCCAGTTTCAGG......TACTGGT.CCGA............AAGGG.CATGGGTTCGAATCCCAT....TCTTGACA Medicago_truncatula_chr8.trna32-LeuCAG Sc: 68.57  
GTCAAGATGGCCGAGTTGGTctA..AGGCGCCAGTTTCAGG......TACTGGT.CCGA............AAGGG.CATGGGTTCGAATCCCAT....TCTTGACA Medicago_truncatula_chr7.trna1-LeuCAG Sc: 68.57  
>>.>>>>...>>..............<<..>>>>>.............<<<<<..>..................<...>>>>>.......<<<<<....<<<<.<<.
GTCAAGATGACCGAGTTGGTctA..AGGCACCAGTTTCAGG......TACTGGT.CCGG............AAAGG.AATGGGTTTGAATCCCAT....TCTTAACA Medicago_truncatula_chr8.trna8-LeuCAG Sc: 39.33  

>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>................<<...>>>>>.......<<<<<....<<<<<<<.
GACAGTTTGGCCGAGT.GGTctA..AGGCGCCAGATTTAGG......CTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....AGCTGTCA Medicago_truncatula_chr5.trna54-LeuTAG Sc: 68.72  
GACAGTTTGGCCGAGT.GGTctA..AGGCGCCAGATTTAGG......CTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....AGCTGTCA Medicago_truncatula_chr3.trna41-LeuTAG Sc: 68.72  
GACAGTTTGGCCGAGT.GGTctA..AGGCGCCAGATTTAGG......CTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....AGCTGTCA Medicago_truncatula_chr0.trna28-LeuTAG Sc: 68.72  
GACGGTTTGGCCGAGT.GGTctA..AGGCGCCAGATTTAGG......CTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....AGCCGTCA Medicago_truncatula_chr8.trna41-LeuTAG Sc: 68.65  
GACGGTTTGGCCGAGT.GGTctA..AGGCGCCAGATTTAGG......CTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....AGCCGTCA Medicago_truncatula_chr4.trna65-LeuTAG Sc: 68.65  
GACGGTTTGGCCGAGT.GGTctA..AGGCGCCAGATTTAGG......CTCTGGT.CCGA............AAGGG.CGTGGGTTCAAATCCCAC....AGCCGTCA Medicago_truncatula_chr1.trna64-LeuTAG Sc: 68.65  
>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>>..............<<<...>>>>>.......<<<<<....<<<<<<<.
GCCGCTATGGTGAAATTGGT..Ag.ACACGCTGCTCTTAGG......AAGCAGT.GCTA............GAGCA.TCTCGGTTCGAGTCCGAG....TAGCGGCA Medicago_truncatula_chr8.trna35-LeuTAG Sc: 55.01  
GCCGCTATGGTGAAATTGGT..Ag.ACACGCTGCTCTTAGG......AAGCAGT.GCTA............GAGCA.TCTCGGTTCGAGTCCGAG....TAGCGGCA Medicago_truncatula_chr7.trna75-LeuTAG Sc: 55.01  
GCCGCTATGGTGAAATTGGT..Ag.ACACGCTGCTCTTAGG......AAGCAGT.GCTA............GAGCA.TCTCGGTTCGAGTCCGAG....TAGCGGCA Medicago_truncatula_chr4.trna4-LeuTAG Sc: 55.01  
>>>>>>>..>>>..............<<<.>>.>>.............<<.<<..>>................<<...>>>>>.......<<<<<....<<<<<<<.
GACGGTTTGGCCAAGT.GGTctA..AGGCATCAGATTTAGG......CTCCGGT.TTGA............AAGGG.CGTGGGTTCAAATCTCAC....AGCCGTCA Medicago_truncatula_chr3.trna84-LeuTAG Sc: 44.62  

>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>>>............<<<<...>>>>>.......<<<<<....<<<<<<<.
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTCTGGT.TCTC..GTGA......GAGAG.CGTGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr3.trna19-LeuCAA Sc: 71.69  
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTCTGGT.CTTC..GAAA......GAGGG.CGTGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr8.trna69-LeuCAA Sc: 70.82  
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTCTGGT.CTTCGA........GAGAGGG.CGTGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr8.trna6-LeuCAA Sc: 70.52  
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTCTGGT.CTTCGA........GAGAGGG.CGTGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr5.trna45-LeuCAA Sc: 70.52  
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTCTGGT.CTTCGA........GAGAGGG.CGTGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr4.trna16-LeuCAA Sc: 70.52  
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTCTGGT.CTTCGA........GAGAGGG.CGTGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr1.trna62-LeuCAA Sc: 70.52  
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTTTGGT.CTTCGA........GAGAGGG.CGTGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr5.trna61-LeuCAA Sc: 65.94  
>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>>>............<<<<....>>>>.......<<<<.....<<<<<<<.
GTCAGGATGGCCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTCTGGT.CTTCGA........GAGAGGG.CATGGGTTCAAATCCCAC....TTCTGACA Medicago_truncatula_chr3.trna106-LeuCAA Sc: 63.94  
>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>>>............<<<<...>>>>>.......<<<<<....<<<<<<<.
GTCAGGATGGTCGAGT.GGTctA..AGGCGCCAGACTCAAG......TTTTGGT.CTTC..GAAA......GAGGG.CGTGGGTTCAAATCCCAC....TTTTGACA Medicago_truncatula_chr5.trna23-LeuCAA Sc: 59.57  
GCCTTGGTGGTGAAAT.GGT..Ag.ACACGCGAGACTCAAA......ATCTCGT.GCTAA..........ATAGCG.TGGAGGTTCGAGTCCTCT....TCAAGGCA Medicago_truncatula_chr3.trna10-LeuCAA Sc: 52.25  
>>>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>>..............<<<...>>>>>.......<<<<<....<<<<<<<.
GCCTTGGTGGTGAAAT.GGT..Ag.ACACGCGAGACTCAAA......ATCTCGTGCTAA............ATAGTgTGGAGGTTCGAGTCCTCT....TCAAGGCA Medicago_truncatula_chr5.trna32-LeuCAA Sc: 51.21  
GCCTTGGTGGTGAAAT.GGT..Ag.ACACGCGAGACTCAAA......ATCTCGTGCTAA............ATAGTgTGGAGGTTCGAGTCCTCT....TCAAGGCA Medicago_truncatula_chr5.trna31-LeuCAA Sc: 51.21  
GCCTTGGTGGTGAAAT.GGT..Ag.ACACGCGAGACTCAAA......ATCTCGTGCTAA............ATAGTgTGGAGGTTCGAGTCCTCT....TCAAGGCA Medicago_truncatula_chr0.trna24-LeuCAA Sc: 51.21  
.>>.>.>..>..>............<..<.>>>>...............<<<<.........................>>>>>.......<<<<<....<.<.<<..
ATTTATTTAGCTTAGTTGGTc.A..ATTTTAAAGCCTCAAA......TCCTTTTG....................GtCCTAAGTTCAAATCTTAG....ATTCAACA Medicago_truncatula_chr5.trna92-LeuCAA Sc: 34.99  

>>>>>>>..>>>..............<<<.>>>>...............<<<<..>>>>............<<<<...>>>>>.......<<<<<....<<<<<<<.
GCAGGCTTGCCCGAGT.GGTctA..AGGGGGTAGACTTAAG......ACCTACT.GCAC..TGA.......GTGCG.CGTGGGTTCGAACCCCAC....AGCCTGCA Medicago_truncatula_chr3.trna82-LeuTAA Sc: 63.99  
GCAGGCTTGCCCGAGT.GGTctA..AGGGGGTAGACTTAAG......ACCTACT.GCAC..TGA.......GTGCG.CGTGGGTTCAAACCCCAC....AGCCTGCA Medicago_truncatula_chr8.trna76-LeuTAA Sc: 62.25  
GCAGGCTTGCCCGAGT.GGTctA..AGGGGGTAGACTTAAG......ACCTACT.GCAC..TGA.......GTGCG.CGTGGGTTCAAACCCCAC....AGCCTGCA Medicago_truncatula_chr4.trna12-LeuTAA Sc: 62.25  
GCAGGCTTGCCCGAGT.GGTctA..AGGGGGTAGACTTAAG......ACCTACT.GCAC..TGA.......GTGCG.CGTGGGTTCAAACCCCAC....AGCCTGCA Medicago_truncatula_chr3.trna79-LeuTAA Sc: 62.25  
GCAGGCTTGCCCGAGT.GGTctA..AGGGGGTAGACTTAAG......ACCTACT.GCAC..TGA.......GTGCG.CGTGGGTTCAAACCCCAC....AGCCTGCA Medicago_truncatula_chr3.trna78-LeuTAA Sc: 62.25  
..>>>>>..>>>..............<<<.>>>>>.............<<<<<..>>>>............<<<<...>>>>>.......<<<<<....<<<<<...
CATAGAATGGCCGAGA.GGTctA..AGGCGCCAGTCTTAAG......AACTGGT.CCTC..GTGA......GAGGG.CGTGGGTTCAAAACCCAC....TTCTGACA Medicago_truncatula_chr4.trna56-LeuTAA Sc: 47.48  
>....>>...>>>............<<<..>>>>>.............<<<<<...........................>>>.......<<<......<<....<.
GGTCAGGTAGTTTAGT.GGTt.A..GAAATTCACTTTTAAAgtgaatAAGTGGGG......T.............GtCCGGGGTTCGAACCCCGA....CCCCTGCA Medicago_truncatula_chr5.trna9-LeuTAA Sc: 22.10  
>.>>>>...>>>>............<<<<.>>>>>.............<<<<<.........................>.>>>.......<<<.<.....<<<<.<.
TTCAGG.TAGTTTAGT.GGCt.A..GAATTCACTTTTTAAAgtgaa.TAAGTGGG......GT............GtCCGGGGTTCGAACCCCGGccc.CCCTGCAT Medicago_truncatula_chr3.trna119-LeuTAA Sc: 21.33  





Lys tRNAs




>>>>>>>..>>>>..........<<<<.>>>>>..............<<<<<................>>>>.>.......<<<<<<<<<<<<.
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr8.trna83-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr8.trna72-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr8.trna34-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr8.trna13-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr7.trna59-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr5.trna8-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr5.trna66-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr5.trna4-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr5.trna21-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr4.trna77-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr4.trna6-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr2.trna43-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr2.trna11-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtCGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr1.trna55-LysCTT Sc: 84.38  
GCCCGTCTAGCTCAGTTGGT.A.GAGCGCAAGGCTCTTA.......ACCTTGTG...........GtTGTGG.GTTCGAGCCCCACGGTGGGCG Medicago_truncatula_chr8.trna5-LysCTT Sc: 81.72  
>>>>..>..>.>>..........<<.<.>>>>>..............<<<<<................>>>>.>.......<<<<<<..<<<<.
GCTACAATAGCTCAGTGGGTtA.GAACGTGTGGACCTTA.......ACCACAAG...........GtCGGAG.GTTCAACCCCTCCTCCTAGTG Medicago_truncatula_chr1.trna53-LysCTT Sc: 46.78  

>>>>>>>..>>>>..........<<<<.>>>>>..............<<<<<................>>>>.>.......<<<<<<<<<<<<.
GCCGTCTTAGCTCAGT.GGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATCCCCACAGACGGCG Medicago_truncatula_chr8.trna43-LysTTT Sc: 88.52  
GCCGTCTTAGCTCAGT.GGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATCCCCACAGACGGCG Medicago_truncatula_chr5.trna111-LysTTT Sc: 88.52  
GCCGACTTAGCTCAGT.GGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATCCCCACAGTCGGCG Medicago_truncatula_chr5.trna43-LysTTT Sc: 88.43  
GCCGACTTAGCTCAGT.GGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATCCCCACAGTCGGCG Medicago_truncatula_chr4.trna13-LysTTT Sc: 88.43  
GCCGTCTTAGCTCAGCTGGT.A.GAGCGCACGGCTTTTA.......ACCGTGTG...........GtCGTGG.GTTCGATTCCCACAGACGGCG Medicago_truncatula_chr1.trna75-LysTTT Sc: 88.26  
GCCGTCTTAGCTCAGCTGGT.A.GAGCGCATGGCTTTTA.......ACCATGTG...........GtCGTGG.GTTCGATTCCCACAGACGGCG Medicago_truncatula_chr7.trna68-LysTTT Sc: 88.06  
GCCGTCTTAGCTCAGCTGGT.A.GAGCGCATGGCTTTTA.......ACCATGTG...........GtCGTGG.GTTCGATTCCCACAGACGGCG Medicago_truncatula_chr3.trna57-LysTTT Sc: 88.06  
GCCGTCTTAGCTCAGCTGGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATTCCCACAGACGGCG Medicago_truncatula_chr7.trna10-LysTTT Sc: 87.57  
GCCGTCTTAGCTCAGCTGGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATTCCCACAGACGGCG Medicago_truncatula_chr5.trna99-LysTTT Sc: 87.57  
GCCGTCTTAGCTCAGCTGGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATTCCCACAGACGGCG Medicago_truncatula_chr5.trna109-LysTTT Sc: 87.57  
GCCGTCTTAGCTCAGCTGGT.A.GAGCGCATGGCTTTTA.......ACCATGTG...........GtCGTGG.GTTCGATTCCCACAGATGGCG Medicago_truncatula_chr7.trna70-LysTTT Sc: 86.16  
GCTGTCTTAGCTCAGCTGGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATTCCCACAGACAGCG Medicago_truncatula_chr5.trna17-LysTTT Sc: 85.96  
GCCGACTTAGCTCAGT.GGT.A.GAGCGCGTGGCTTTTA.......ACCACGTG...........GtCGTGG.GTTCGATCCCCACGGTCGGCG Medicago_truncatula_chr0.trna27-LysTTT Sc: 82.79  
GGGTGTATAGCTCAGTTGGT.A.GAGCATTGGGCTTTTA.......ACCTAATG...........GtCGCAG.GTTCAAGTCCTGCTATACCCA Medicago_truncatula_chr1.trna82-LysTTT Sc: 77.00  
GGGTGTATAGCTCAGTTGGT.A.GAGCATTGGGCTTTTA.......ACCTAATG...........GtCGCAG.GTTCAAGTCCTGCTATACCCA Medicago_truncatula_chr1.trna3-LysTTT Sc: 77.00  
>>>>>>>..>>>>..........<<<<.>>>>>..............<<<<<................>>>>..........<<<<<<<<<<<.
GTCGTCTTAGCTCAGCTGGT.A.GAGCGCATGGCTTTTA.......ACCATGTG...........GtCGTGG.GTTCGATTGCCACAGACGGCG Medicago_truncatula_chr7.trna69-LysTTT Sc: 74.46  
>>>>>>>..>>>>..........<<<<.>>>>>..............<<<<<................>>>>.>.......<<<<<<<<<<<<.
GTTGTCTTAGCTCAGCTGGT.A.GAGCGCATGGCTTTTA.......ACCATGTG...........GtCGTGG.GTTTGATTCCCACAGACGGCG Medicago_truncatula_chr4.trna98-LysTTT Sc: 70.70  
GCCCTTATAGCTCAGT.GGT.A.GAGCATCAGTCTTTTC.......AACTGAAG...........GtCCGTA.GTTCGATCCTACGTGAGGGTA Medicago_truncatula_chr1.trna40-LysTTT Sc: 70.15  
>....>>..>>>>..........<<<<.>>>..................<<<................>>>>.>.......<<<<<<<....<.
GATCAAGTAGTTTAGT.GGTtA.GAATTCACCATTTTTAaggtgaaTAAGTGAG...........GtATCGGaGTTCGAACCCCGGCTCCTGCA Medicago_truncatula_chr7.trna4-LysTTT Sc: 20.68  
GATCAAGTAGTTTAGT.GGTtA.GAATTCACCATTTTTAaggtgaaTAAGTGAG...........GtATCGGaGTTCGAACCCCGGCTCCTGCA Medicago_truncatula_chr7.trna3-LysTTT Sc: 20.68  





Met tRNAs




>>>>>>>..>>>>...........<<<<.>>>>>..................<<<<.<................>>>>>.............<<<<<<<<<<<<.
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr6.trna16-MetCAT Sc: 67.87  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr5.trna58-MetCAT Sc: 67.87  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr4.trna21-MetCAT Sc: 67.87  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr3.trna14-MetCAT Sc: 67.87  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr3.trna13-MetCAT Sc: 67.87  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr2.trna39-MetCAT Sc: 67.87  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr2.trna37-MetCAT Sc: 67.87  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTCTGATA Medicago_truncatula_chr1.trna68-MetCAT Sc: 67.87  
>>>>>>>..>>>.............<<<.>>>>>..................<<<<.<................>>>>>.............<<<<<<<<<<<<.
GCATCCATGGCTGAAT..GGTtA.AAGCGCCCAACTCATA...........ATTGGcGAA...........GtCGTAGGTTCAATT......CCTACTGGATGCA Medicago_truncatula_chr4.trna87-MetCAT Sc: 67.69  
GCATCCATGGCTGAAT..GGTtA.AAGCGCCCAACTCATA...........ATTGGcGAA...........GtCGTAGGTTCAATT......CCTACTGGATGCA Medicago_truncatula_chr3.trna11-MetCAT Sc: 67.69  
>>>>>>>..>>>>...........<<<<.>>>>>..................<<<<.<................>>>>>.............<<<<<<<<<<<<.
ATCAAAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTTTGATA Medicago_truncatula_chr3.trna18-MetCAT Sc: 67.25  
ATCAGAGTGGCGCAGC..GGA.A.GCGTGGTGGGCCCATA...........ACCCA.CAG...........GtCCCTGGATCGAAA......CCAGGCTTTGATA Medicago_truncatula_chr6.trna17-MetCAT Sc: 66.50  
.>>>>>>..>>>>...........<<<<.>>>>>..................<<<<.<................>>>>>.............<<<<<<<<<<<..
AGCGGGGTAGAGTAGTT.GGTtA.ACTCGTCAGGCTCATG...........ATCTG.AAG...........AtTGCTGGTTCGAAT......CCAGCCC