>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Mus musculus (mm9 July 2007)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr11 238 51790041 51790112 View Ala AGC cactgaggct agagaggaaa 0 0 31.32 21.57 9.75 Both chrX 159 53840716 53840788 View Ala AGC gtcaagggcc aaaaccaggt 0 0 36.56 27.03 9.53 Both chr11 1203 116277365 116277293 View Ala AGC ggggcggtga gcaatgaata 0 0 37.96 30.00 7.96 Both chr9 1100 74956819 74956737 View Ala AGC ttaaaataca gataaataaa 0 0 43.22 30.50 12.72 Both chr10 979 77846462 77846390 View Ala AGC ctgagaggct agaatggaag 0 0 46.87 37.41 9.46 Both chr10 1120 61853944 61853872 View Ala AGC agcaagactt taaagcatgt 0 0 53.72 43.38 10.34 Both chr13 963 23504882 23504810 View Ala AGC cctctacctt gctattatgt 0 0 56.23 37.98 18.25 Both chr4 645 132071923 132071994 View Ala AGC tttcgcatgt tttttaaatc 0 0 56.36 42.54 13.82 Eufind chr19 8 3576263 3576335 View Ala AGC aattatagct tagcatagtt 0 0 58.48 35.52 22.96 Both chr13 94 23377518 23377590 View Ala AGC actgtaactc gtttttatgt 0 0 62.18 38.16 24.02 Both chr13 96 23390930 23391002 View Ala AGC tccatatgtc gttattcctt 0 0 62.18 38.16 24.02 Both chr13 966 23492736 23492664 View Ala AGC tactatggag cagcttttga 0 0 62.18 38.16 24.02 Both chr13 102 23523281 23523353 View Ala AGC accatcagaa gttttgcatt 0 0 63.06 39.95 23.11 Both chr3 29 19528995 19529067 View Ala AGC tgccggtgga gttccccttt 0 0 63.68 41.02 22.66 Both chr5 110 31190888 31190960 View Ala AGC cactacagct cttcctttta 0 0 63.68 41.02 22.66 Both chr13 66 21314455 21314526 View Ala AGC tggtacgtga gttttcaagc 0 0 77.18 53.38 23.80 Both chr13 67 21325914 21325985 View Ala AGC tagctgtgtc gtgttttcaa 0 0 77.18 53.38 23.80 Both chr13 69 21334439 21334510 View Ala AGC atctgcaagt ttctagcaaa 0 0 77.42 52.26 25.16 Both chr13 71 21351637 21351708 View Ala AGC ttcaagtggt ggcttttgat 0 0 81.40 56.28 25.12 Both chrX 373 133104302 133104374 View Ala CGC tgctagggct gggctttttt 0 0 53.00 39.55 13.45 Both chrX 636 133102475 133102404 View Ala CGC tgttagggct gagcttttct 0 0 57.36 45.25 12.11 Both chr4 626 131681174 131681245 View Ala CGC acctggtcac gtagtgtttt 0 0 59.08 40.91 18.17 Both chrX 364 132902260 132902331 View Ala CGC tgctagggct gagctttttc 0 0 63.17 50.08 13.09 Both chrX 369 132936407 132936478 View Ala CGC tgttagggct gagcttttct 0 0 64.47 46.80 17.67 Both chrX 639 132930132 132930061 View Ala CGC tgttagggct gagcttttct 0 0 64.47 46.80 17.67 Both chrX 640 132913976 132913905 View Ala CGC tgttagggct gagcttttct 0 0 64.47 46.80 17.67 Both chr2 263 57034489 57034560 View Ala CGC ttagcggctg agcagccgga 0 0 73.12 53.51 19.61 Both chr13 70 21346089 21346160 View Ala CGC caccacggag agactttttc 0 0 74.81 51.23 23.58 Both chr13 955 23530637 23530566 View Ala CGC aacagcggct gttccttttt 0 0 74.81 51.23 23.58 Both chrX 375 133124904 133124975 View Ala TGC tggcaggctt gggaattttt 0 0 66.70 43.11 23.59 Both chrX 363 132892141 132892212 View Ala TGC taccatagct gagcttttct 0 0 69.60 49.01 20.59 Both chrX 371 133088264 133088335 View Ala TGC gtgcaggagt atgtattcta 0 0 71.34 50.74 20.60 Both chrX 637 132964975 132964904 View Ala TGC gtgcaggagt atgtattcta 0 0 71.34 50.74 20.60 Both chr5 702 125889842 125889913 View Ala TGC ctctccatca actttttttt 0 0 72.71 49.12 23.59 Both chrX 366 132915286 132915357 View Ala TGC tactagagct cagcttttct 0 0 73.19 49.60 23.59 Both chrX 368 132931443 132931514 View Ala TGC tactagagct cagcttttct 0 0 73.19 49.60 23.59 Both chrX 372 133103785 133103856 View Ala TGC tactagagct gagtttttct 0 0 73.19 49.60 23.59 Both chr11 2022 48648002 48647931 View Ala TGC aacagtgagt aacggctacc 0 0 74.45 50.86 23.59 Both chr5 1317 125884691 125884620 View Ala TGC ggagcggtcg ccattttttt 0 0 74.45 50.86 23.59 Both chr13 68 21332814 21332885 View Ala TGC ttcaggagca cttccctttt 0 0 79.65 56.37 23.28 Both   chr13 973 22113085 22113013 View Arg ACG tccctgtggc accatgtctc 0 0 68.07 51.18 16.89 Both chr9 783 123438615 123438543 View Arg ACG cctcagcacc acgtgtgcga 0 0 68.07 51.18 16.89 Both chr3 1040 19528031 19527959 View Arg ACG ccacgccgac agcttttggc 0 0 70.76 49.51 21.25 Both chr13 951 23592463 23592391 View Arg ACG acctataggt gtactttttt 0 0 72.37 52.49 19.88 Both chr13 953 23538733 23538661 View Arg ACG tacgtgtaca gaatgtacag 0 0 72.37 52.49 19.88 Both chr14 209 55136533 55136605 View Arg ACG caatgtctgc ttgggactgg 0 0 72.37 52.49 19.88 Both chr11 945 106874180 106874252 View Arg CCG actttgtagt catggtcgtt 0 0 65.49 49.24 16.25 Both chr17 994 23687302 23687230 View Arg CCG gtcagtgtag ctgcgtgcat 0 0 68.22 53.54 14.68 Both chr13 997 21307399 21307327 View Arg CCG cctaccactt gtgtgctttt 0 0 69.88 52.79 17.09 Both chr6 107 38483931 38484003 View Arg CCT agtagaagaa gttcgttttt 0 0 67.28 54.18 13.10 Both chr17 995 23685807 23685735 View Arg CCT tttctcgtca atgaggtgtt 0 0 71.53 57.48 14.05 Both chr11 1234 115274690 115274618 View Arg CCT tttttatcgc gtgttccctt 0 0 73.41 55.84 17.57 Both chrX 321 108490826 108490898 View Arg CCT tactgtgtaa gtagcacttg 0 0 73.41 55.84 17.57 Both chr11 1022 115274295 115274367 View Arg CCT cgtgccgtga aaaaggacta 0 0 73.88 56.31 17.57 Both chr13 948 23618397 23618325 View Arg TCG ctgcctctgt cttaactttt 0 0 67.10 47.22 19.88 Both chr13 74 21371565 21371637 View Arg TCG gcctgtgtgc gtatttttcc 0 0 69.08 49.20 19.88 Both chr13 949 23595921 23595849 View Arg TCG ttccatgtga agctagtgtt 0 0 69.08 49.20 19.88 Both chr11 1023 115275093 115275165 View Arg TCG tacttaggta aaatgttttc 0 0 70.52 51.50 19.02 Both chr7 387 86611305 86611377 View Arg TCG tctcgctggc acttgtatgt 0 0 76.93 58.34 18.59 Both chr1 730 175320460 175320533 View Arg TCT gtgtggtgag atcacctggc 0 0 71.99 55.66 16.33 Both chr19 637 12086163 12086078 View Arg TCT aaacacacct cttttatttt 12086126 12086114 69.22 48.77 20.45 Both chr3 628 121995950 121995866 View Arg TCT tccaacaggt gaacattttt 121995913 121995902 71.18 52.88 18.30 Both chr13 985 22009116 22009031 View Arg TCT gttacaggtg acggtatttt 22009079 22009067 71.21 52.13 19.08 Both chr11 1818 68937070 68936984 View Arg TCT cccgccatgt gttttattac 68937033 68937020 70.50 50.05 20.45 Both   chr3 285 96138894 96138967 View Asn GTT tctcctatgt tgtgtttgct 0 0 53.72 45.96 7.76 Both chr15 1013 16205778 16205705 View Asn GTT gtacagctgg acagcgttcc 0 0 63.21 52.58 10.63 Both chr1 814 190765285 190765358 View Asn GTT ttaaaggcgt acagcgctcc 0 0 63.48 55.39 8.09 Eufind chr3 283 96125997 96126070 View Asn GTT gaatgctcgt tcgtgtgact 0 0 81.15 57.88 23.27 Both chr3 757 96138611 96138538 View Asn GTT caccttatgt tgtgtttcat 0 0 81.41 58.92 22.49 Both chr1 1006 172964146 172964073 View Asn GTT agcatcaccg gtgggaatgt 0 0 82.24 58.97 23.27 Both chr10 381 79711904 79711977 View Asn GTT gactaatgtc accacagcga 0 0 82.24 58.97 23.27 Both chr11 1446 97563836 97563763 View Asn GTT aactgtcacc gtctcggcct 0 0 82.24 58.97 23.27 Both chr2 1947 18508744 18508671 View Asn GTT gagcgccaaa cctttccttt 0 0 82.24 58.97 23.27 Both chr3 289 96206141 96206214 View Asn GTT tttctacatc agcattttaa 0 0 82.24 58.97 23.27 Both chr3 294 96255348 96255421 View Asn GTT gctcaccacc acagacagtt 0 0 82.24 58.97 23.27 Both chr3 298 96301704 96301777 View Asn GTT cacttcacat gtgccttttg 0 0 82.24 58.97 23.27 Both chr3 750 96263134 96263061 View Asn GTT gctcaccacc acagacagtt 0 0 82.24 58.97 23.27 Both chr5 1043 150040650 150040577 View Asn GTT aggcagctgt gcagcgttcc 0 0 82.24 58.97 23.27 Both   chr5 1609 101421964 101421893 View Asp GTC ataaacatag agtgttctct 0 0 59.67 45.73 13.94 Eufind chr2 510 113929103 113929174 View Asp GTC agagtgcatt gcacgatagt 0 0 60.46 35.76 24.70 Both chr1 1000 172995560 172995489 View Asp GTC gtcggcgttg gcgtagcgtc 0 0 72.92 48.38 24.54 Both chr1 1005 172967231 172967160 View Asp GTC atcatggttg actagtgagt 0 0 72.92 48.38 24.54 Both chr1 707 173032502 173032573 View Asp GTC actggtgtcg atacagtagc 0 0 72.92 48.38 24.54 Both chr1 994 173010809 173010738 View Asp GTC gtcggcgttg acgtagcgtc 0 0 72.92 48.38 24.54 Both chr1 997 173003195 173003124 View Asp GTC gtcggcgttg acgtagcgtc 0 0 72.92 48.38 24.54 Both chr10 851 92915794 92915723 View Asp GTC actgtgcaat gtacaatgat 0 0 72.92 48.38 24.54 Both chr11 397 68854486 68854557 View Asp GTC ttcagcttac aagtgctttt 0 0 72.92 48.38 24.54 Both chr11 69 7769780 7769851 View Asp GTC gtaggcgttg atgtagcgtc 0 0 72.92 48.38 24.54 Both chr13 84 22003182 22003253 View Asp GTC gttctcgttc tctggacaca 0 0 72.92 48.38 24.54 Both chr13 979 22032259 22032188 View Asp GTC cactgcctca agtgatctct 0 0 72.92 48.38 24.54 Both chr13 981 22027437 22027366 View Asp GTC aatgcttact aagatggcta 0 0 72.92 48.38 24.54 Both chr5 1314 125889457 125889386 View Asp GTC gcacagcttg gctaacagtg 0 0 72.92 48.38 24.54 Both chr5 1316 125886048 125885977 View Asp GTC tcagctctct attgttaaga 0 0 72.92 48.38 24.54 Both chr10 856 90644913 90644842 View Asp GTC cccccacagc gttgtgaatt 0 0 74.76 50.21 24.55 Both   chr6 170 48155067 48155138 View Cys GCA atgtcagcaa aataattgta 0 0 55.85 36.66 19.19 Both chr6 177 48266536 48266605 View Cys GCA gaagcagatg ttcttattgt 0 0 56.48 39.85 16.63 Eufind chr6 1020 48228862 48228791 View Cys GCA ttgtaccagt ttctcatatt 0 0 58.02 42.90 15.12 Both chr6 1033 48090554 48090483 View Cys GCA tgaagcagat cttattgtct 0 0 58.93 49.12 9.81 Eufind chr6 180 48291587 48291658 View Cys GCA ttccttaaat ttcttttttt 0 0 60.03 47.17 12.86 Both chr6 174 48252458 48252529 View Cys GCA tgaagcagat tcttactgtc 0 0 60.67 46.57 14.10 Both chr6 1015 48255534 48255463 View Cys GCA ataaacaggt tgccaaaagt 0 0 62.29 44.10 18.19 Both chr6 167 48136317 48136388 View Cys GCA ctcaagccag gttggtaagc 0 0 62.33 41.06 21.27 Both chr6 176 48261498 48261569 View Cys GCA atgaagcaga ttctaaacat 0 0 66.77 52.55 14.22 Both chr6 1034 48089580 48089509 View Cys GCA cctataaaat ttgttaaata 0 0 66.83 48.79 18.04 Eufind chr6 182 48306850 48306921 View Cys GCA gctataaaat ttcttaaata 0 0 66.85 48.66 18.19 Both chr6 1018 48238946 48238875 View Cys GCA tgttactagt tttcatgtga 0 0 67.15 53.09 14.06 Both chr6 162 48093355 48093426 View Cys GCA acaaacaggt actacaagtt 0 0 67.55 51.98 15.57 Both chr6 179 48290612 48290683 View Cys GCA tgaagcagat tcttattgtc 0 0 68.50 51.08 17.42 Both chr6 1023 48203150 48203079 View Cys GCA acaaacaggt accacaagat 0 0 68.53 53.74 14.79 Both chr6 1014 48258799 48258728 View Cys GCA tgctactagt tttcttggat 0 0 69.30 55.10 14.20 Both chr6 175 48253464 48253535 View Cys GCA gctataaaat ttcttaaata 0 0 69.62 50.60 19.02 Both chr11 1444 97631214 97631143 View Cys GCA agcaaggtga ccatcttttg 0 0 73.73 55.81 17.92 Both chr6 1005 48313602 48313531 View Cys GCA tagtaccagt tatttatgtc 0 0 74.20 55.02 19.18 Both chr6 1006 48304089 48304018 View Cys GCA ataaacaggt actacaagct 0 0 74.20 55.02 19.18 Both chr6 1008 48299832 48299761 View Cys GCA ataaacaagt taccaaaagt 0 0 74.20 55.02 19.18 Both chr6 1009 48287161 48287090 View Cys GCA ataaagaggt actacaagct 0 0 74.20 55.02 19.18 Both chr6 1010 48286178 48286107 View Cys GCA tgctactagt tttcttggat 0 0 74.20 55.02 19.18 Both chr6 1011 48282910 48282839 View Cys GCA ataaacaagt taccaaaagt 0 0 74.20 55.02 19.18 Both chr6 1012 48263088 48263017 View Cys GCA atgaacaggt actacaagtt 0 0 74.20 55.02 19.18 Both chr6 1013 48259777 48259706 View Cys GCA ataaacaggt actacaagct 0 0 74.20 55.02 19.18 Both chr6 1016 48249020 48248949 View Cys GCA acaaacaggt atgcaagttt 0 0 74.20 55.02 19.18 Both chr6 1019 48229841 48229770 View Cys GCA acaaacaggt accacaagat 0 0 74.20 55.02 19.18 Both chr6 1021 48218528 48218457 View Cys GCA attagcatca atgcaagttt 0 0 74.20 55.02 19.18 Both chr6 1022 48211792 48211721 View Cys GCA attagcatta tttcatggga 0 0 74.20 55.02 19.18 Both chr6 1024 48202173 48202102 View Cys GCA taatatcgat tcctcagatt 0 0 74.20 55.02 19.18 Both chr6 1025 48194386 48194315 View Cys GCA tattagtatt actcatacct 0 0 74.20 55.02 19.18 Both chr6 1027 48173164 48173093 View Cys GCA tctcaggtca tccagtatat 0 0 74.20 55.02 19.18 Both chr6 1030 48157521 48157450 View Cys GCA atatacaaat actttttgtc 0 0 74.20 55.02 19.18 Both chr6 1031 48106345 48106274 View Cys GCA tgaagcagat ttctaaacat 0 0 74.20 55.02 19.18 Both chr6 1032 48094998 48094927 View Cys GCA tgaagcagat ttctaaacat 0 0 74.20 55.02 19.18 Both chr6 161 48083936 48084007 View Cys GCA ttgtaccaat tatttatgtc 0 0 74.20 55.02 19.18 Both chr6 163 48104713 48104784 View Cys GCA acaaacaggt gctacaagtt 0 0 74.20 55.02 19.18 Both chr6 164 48110178 48110249 View Cys GCA acaaacaggt actacaagtt 0 0 74.20 55.02 19.18 Both chr6 166 48114100 48114171 View Cys GCA ataaacaggt atgcaagttt 0 0 74.20 55.02 19.18 Both chr6 168 48147025 48147096 View Cys GCA gcatgaaggt tgcctgaatc 0 0 74.20 55.02 19.18 Both chr6 171 48221925 48221996 View Cys GCA acaaacaggt atgcaagttt 0 0 74.20 55.02 19.18 Both chr6 172 48223679 48223750 View Cys GCA tagtaccagt tatttatgtc 0 0 74.20 55.02 19.18 Both chr6 173 48247432 48247503 View Cys GCA tgaagcagat ttctaaacat 0 0 74.20 55.02 19.18 Both chr6 178 48267514 48267585 View Cys GCA gctataaaat ttcttaaata 0 0 74.20 55.02 19.18 Both chr6 181 48305854 48305925 View Cys GCA tgaagcagat tcttattgtc 0 0 74.20 55.02 19.18 Both chr9 592 104302450 104302521 View Cys GCA ccatgtcact gtacattctt 0 0 74.20 55.02 19.18 Both chr6 1026 48174399 48174328 View Cys GCA ataaacatct tcctttttta 0 0 74.25 55.83 18.42 Both chr6 1029 48159908 48159837 View Cys GCA ataagcaggt acttttctct 0 0 74.26 55.02 19.24 Both chr6 1017 48243077 48243006 View Cys GCA ataagcaggt atcacaaggt 0 0 74.83 53.41 21.42 Both chr11 1442 97660291 97660220 View Cys GCA gcgtcggtgc cagagtcttt 0 0 77.18 59.26 17.92 Both chr17 458 71948611 71948682 View Cys GCA agtagccacc tcctataatt 0 0 77.65 58.48 19.17 Both chr9 593 104306386 104306457 View Cys GCA tattggctat gggttaggct 0 0 77.65 58.48 19.17 Both chr11 1432 97850308 97850237 View Cys GCA tcagtacact cacggctact 0 0 77.71 58.47 19.24 Both chr11 1433 97849631 97849560 View Cys GCA taccggcaga agcaggctca 0 0 77.71 58.47 19.24 Both chr11 791 97658386 97658457 View Cys GCA taccgccaga tggtgggtgc 0 0 77.71 58.47 19.24 Both chr6 157 47928996 47929067 View Cys GCA tctgccagca tacaggccca 0 0 77.71 58.47 19.24 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr13 975 22088521 22088450 View Gln CTG cagcctgtgt attagttttc 0 0 63.63 43.74 19.89 Both chr3 309 97485382 97485453 View Gln CTG ctgtgtgtag ttctctttaa 0 0 69.34 47.76 21.58 Both chr3 297 96283314 96283385 View Gln CTG attgcatatg tttctgttta 0 0 72.91 51.33 21.58 Both chr3 753 96203053 96202982 View Gln CTG aagggacatg ttggtgtcag 0 0 72.91 51.33 21.58 Both chr3 756 96145150 96145079 View Gln CTG tttatgtgta ctctatttac 0 0 72.91 51.33 21.58 Both chr11 1817 68938180 68938109 View Gln CTG cagaagaggg tagcattttg 0 0 73.65 50.36 23.29 Both chr13 64 21264220 21264291 View Gln CTG aaaaggcggt actttttttt 0 0 73.65 50.36 23.29 Both chr13 982 22025901 22025830 View Gln CTG aaagttgtgg agtttatttt 0 0 73.65 50.36 23.29 Both chr9 342 64585853 64585924 View Gln CTG cctccgtgct gctccctttt 0 0 73.65 50.36 23.29 Both chr13 87 22012069 22012140 View Gln CTG tttattgtga tagtagctat 0 0 75.58 53.99 21.59 Both chrX 936 13436363 13436292 View Gln TTG ctgccgctct ctcattgata 0 0 57.25 38.91 18.34 Both chr11 630 86075670 86075741 View Gln TTG agtagcagca ctttgaacct 0 0 57.70 44.74 12.96 Eufind chr13 995 21360409 21360338 View Gln TTG atcttttgtg ttaaaggctc 0 0 65.84 45.89 19.95 Both chr13 113 23610919 23610990 View Gln TTG cgttagcata catgacattt 0 0 68.31 52.31 16.00 Both chr13 114 23611482 23611553 View Gln TTG cgtcgtactc tctttccttt 0 0 68.31 52.31 16.00 Both chr11 1493 95720557 95720486 View Gln TTG gccgccagca cactgaacct 0 0 73.77 50.83 22.94 Both   chr3 622 123602176 123602105 View Glu CTC aaactatcta ccatggtagt 0 0 42.57 31.11 11.46 Both chr12 886 43516133 43516062 View Glu CTC tattgaaact atactgtttt 0 0 55.25 38.76 16.49 Eufind chr7 967 106692481 106692410 View Glu CTC tttgggatgc gcctctcttc 0 0 57.84 35.88 21.96 Eufind chr17 720 56231495 56231424 View Glu CTC acaacgacgc gcctctcttc 0 0 68.96 52.42 16.54 Both chr1 1002 172994366 172994295 View Glu CTC gggccgacgc gcctctcttc 0 0 76.61 53.94 22.67 Both chr1 709 173033174 173033245 View Glu CTC ctcctatcac gtgctttttc 0 0 76.61 53.94 22.67 Both chr1 996 173009608 173009537 View Glu CTC gggccgacgc gcctctcttc 0 0 76.61 53.94 22.67 Both chr1 999 173001994 173001923 View Glu CTC gggccgacgc gcctctcttc 0 0 76.61 53.94 22.67 Both chr10 81 30530946 30531017 View Glu CTC tcaggaagcc gcaatgtttt 0 0 76.61 53.94 22.67 Both chr11 1912 58115750 58115679 View Glu CTC tactatctct gtacttgttt 0 0 76.61 53.94 22.67 Both chr13 1001 21252725 21252654 View Glu CTC actggcagtt gtgcagtttt 0 0 76.61 53.94 22.67 Both chr3 303 96962008 96962079 View Glu CTC tctcctaact atactgtttt 0 0 76.61 53.94 22.67 Both chr3 745 96305441 96305370 View Glu CTC ggcgctaact ataaattttt 0 0 76.61 53.94 22.67 Both chr3 286 96150598 96150669 View Glu TTC gttctgtccg ggcttttgac 0 0 72.33 49.66 22.67 Both chr3 754 96191399 96191328 View Glu TTC gttctgtccg ggcttttgac 0 0 72.33 49.66 22.67 Both chr1 1547 34491728 34491657 View Glu TTC tgccggcagc cagtattttt 0 0 75.00 51.69 23.31 Both chr14 359 79881475 79881546 View Glu TTC tagcagcact cagtgtcact 0 0 75.00 51.69 23.31 Both chr13 105 23555404 23555475 View Glu TTC gcatagcagt actcattgtt 0 0 76.26 53.72 22.54 Both chr14 347 76552581 76552652 View Glu TTC acttgtcgtc cgccaatatc 0 0 76.26 53.72 22.54 Both chr7 337 65654685 65654756 View Glu TTC tttcgtcagt cagcagcttt 0 0 76.26 53.72 22.54 Both chr9 961 104311068 104310997 View Glu TTC cagtatcagt cacaagatct 0 0 76.26 53.72 22.54 Both   chr11 205 48637230 48637303 View Gly ACC gtaggtatgg aaaggtgaaa 0 0 76.62 58.41 18.21 Eufind chr3 282 96115177 96115247 View Gly CCC tgcatgggga agatctccct 0 0 51.51 34.73 16.78 Both chr4 67 32317225 32317295 View Gly CCC tggtgatggt atatggtctt 0 0 70.39 56.88 13.51 Both chr3 287 96186834 96186904 View Gly CCC atctacggga gtacctctct 0 0 75.97 55.92 20.05 Both chr3 755 96155160 96155090 View Gly CCC atctacggga gtacctctct 0 0 75.97 55.92 20.05 Both chr3 752 96228026 96227956 View Gly CCC tctcaagggt atgtggtctt 0 0 76.37 56.32 20.05 Both chr17 113 26012033 26012103 View Gly CCC tcgctcaaca tgttcttttt 0 0 76.98 51.05 25.93 Both chr6 317 86353887 86353957 View Gly CCC atcctcaaca tgtcttttct 0 0 76.98 51.05 25.93 Both chr4 1314 132670481 132670411 View Gly GCC gtggagtgaa cagctttctc 0 0 62.70 54.09 8.61 Both chr8 560 113586461 113586531 View Gly GCC ttacagtaag tatatctctt 0 0 73.70 53.65 20.05 Both chr1 1392 74863391 74863321 View Gly GCC gtagctagtc ttgcttactt 0 0 74.71 54.66 20.05 Both chr1 699 172975116 172975186 View Gly GCC agtttgccta cgatgcgtac 0 0 81.62 61.57 20.05 Both chr11 1819 68932366 68932296 View Gly GCC ctccttgtct cagttctagc 0 0 81.62 61.57 20.05 Both chr13 110 23609072 23609142 View Gly GCC gtaacaagga ctctctcact 0 0 81.62 61.57 20.05 Both chr13 77 21802449 21802519 View Gly GCC aactaccgga ggtctcgttt 0 0 81.62 61.57 20.05 Both chr2 1747 57034875 57034805 View Gly GCC atatgtgctt cttgcctttt 0 0 81.62 61.57 20.05 Both chr3 878 84033003 84032933 View Gly GCC caactaagtg catctaaatt 0 0 81.62 61.57 20.05 Both chr8 886 113155216 113155146 View Gly GCC aacagctgga gagcttgttt 0 0 81.62 61.57 20.05 Both chr8 887 113154523 113154453 View Gly GCC cacagctgga gtagcaatcc 0 0 81.62 61.57 20.05 Both chr1 702 172996762 172996832 View Gly GCC aggagacagg gagtccagtc 0 0 82.15 62.58 19.57 Both chr1 704 173004433 173004503 View Gly GCC aggagacagg gagtccagtc 0 0 82.15 62.58 19.57 Both chr1 706 173012007 173012077 View Gly GCC aggagacagg gagtccagtc 0 0 82.15 62.58 19.57 Both chr1 1001 172994901 172994830 View Gly TCC cagcggtgca gcgtgcccac 0 0 73.26 52.83 20.43 Both chr1 1004 172968199 172968128 View Gly TCC tcgccgtgct aagttaaaat 0 0 73.26 52.83 20.43 Both chr1 708 173032887 173032958 View Gly TCC ggttatcgct taacattttt 0 0 73.26 52.83 20.43 Both chr1 995 173010150 173010079 View Gly TCC cagcggtgca gcgtgcccac 0 0 73.26 52.83 20.43 Both chr1 998 173002536 173002465 View Gly TCC cagcggtgca gcgtgcccac 0 0 73.26 52.83 20.43 Both chr11 1824 68854851 68854780 View Gly TCC tcttctgcat acggcaaacc 0 0 73.26 52.83 20.43 Both chr3 746 96305003 96304932 View Gly TCC tcgctaacct taaggttgtc 0 0 73.26 52.83 20.43 Both   chr1 717 173599570 173599642 View His ATG ctgggtctgc ttgggactgg 0 0 56.65 47.81 8.84 Eufind chr3 293 96239895 96239966 View His GTG tgtgtggtcc ttatcctctg 0 0 61.18 33.73 27.45 Both chr2 1431 122203170 122203099 View His GTG ccggtagctc ttgtggcaac 0 0 64.63 37.18 27.45 Both chr2 1432 122201301 122201230 View His GTG ctggtagctc ttgtggcaac 0 0 64.63 37.18 27.45 Both chr2 586 122203704 122203775 View His GTG ccggtagctc ttgtggcaac 0 0 64.63 37.18 27.45 Both chr3 291 96213992 96214063 View His GTG cacgtggctc gtattgtatt 0 0 64.63 37.18 27.45 Both chr3 295 96256418 96256489 View His GTG cgcgtggctc tgtcgtcctt 0 0 64.63 37.18 27.45 Both chr3 747 96304360 96304289 View His GTG ccggtggctc tttagtagta 0 0 64.63 37.18 27.45 Both chr3 751 96262064 96261993 View His GTG cgcgtggctc tgtcgtcctt 0 0 64.63 37.18 27.45 Both chr4 1697 82265598 82265527 View His GTG tcagtagctc ggaattgagg 0 0 64.63 37.18 27.45 Both chr3 749 96267966 96267895 View His GTG cgtgtggctt ctatcgtcct 0 0 65.06 38.16 26.90 Both   chr16 315 75434424 75434497 View Ile AAT taaagaacct gcaaactgcc 0 0 65.75 51.58 14.17 Both chr4 62 27831926 27831999 View Ile AAT agacaggtct gggaagcaac 0 0 78.27 58.15 20.12 Both chr13 100 23488929 23489002 View Ile AAT tcttatgtct catatgtttt 0 0 79.19 60.75 18.44 Both chr11 1823 68875895 68875822 View Ile AAT tctcgtctct gtgtgcttat 0 0 80.66 62.17 18.49 Both chr11 393 68850505 68850578 View Ile AAT ccaagcagct aagctgaagc 0 0 80.66 62.17 18.49 Both chr12 470 112083548 112083621 View Ile AAT ttagccgtct ggggagtttg 0 0 80.66 62.17 18.49 Both chr13 92 22121092 22121165 View Ile AAT tccacgagct gtagggatta 0 0 80.66 62.17 18.49 Both chr13 956 23530051 23529978 View Ile AAT cttcaggtct gctggagttt 0 0 80.66 62.17 18.49 Both chr13 968 23400994 23400921 View Ile AAT tctcatgtct cacatatttt 0 0 80.66 62.17 18.49 Both chr13 989 21973975 21973902 View Ile AAT ttgtacatct gtggtagatt 0 0 80.66 62.17 18.49 Both chr13 990 21947262 21947189 View Ile AAT ctggcgacct gtaaactgct 0 0 80.66 62.17 18.49 Both chr2 1506 118881962 118881889 View Ile GAT ttattaacct gcaagctgcc 0 0 52.90 42.59 10.31 Both chr1 583 155305794 155305866 View Ile TAT ccctatgcct tgtggtgtgc 0 0 59.10 40.62 18.48 Eufind chr13 987 21988900 21988807 View Ile TAT gagaaagcat tgttttcttc 21988862 21988843 67.58 39.39 28.19 Both chr13 969 23362385 23362290 View Ile TAT tcctacggat ttgttttcat 23362347 23362326 66.21 38.02 28.19 Both chr7 156 29158018 29158112 View Ile TAT tgcggccgga cttctttttt 29158056 29158076 68.50 40.30 28.20 Both chr17 516 84261284 84261376 View Ile TAT ccacagcgga cgatcctttt 84261322 84261340 68.11 39.92 28.19 Both   chr16 4 3449838 3449909 View Leu AAG ttctctttaa tcttcttttg 0 0 32.73 26.76 5.97 Both chr16 829 3012080 3012009 View Leu AAG ttctctttaa tcttcttttg 0 0 32.73 26.76 5.97 Both chr19 2 3066556 3066627 View Leu AAG ttctctttaa tcttcttttg 0 0 32.73 26.76 5.97 Both chr7 559 128061031 128061112 View Leu AAG tcaacagctg aggcaggctt 0 0 67.95 49.74 18.21 Both chr13 63 21262075 21262156 View Leu AAG ctacatcaac acaggttact 0 0 68.58 48.13 20.45 Both chr11 2021 48670557 48670476 View Leu AAG tacacgtcga gtaacttttg 0 0 69.84 50.16 19.68 Both chr13 62 21261905 21261986 View Leu AAG cctcgacggg accggttttt 0 0 69.84 50.16 19.68 Both chr14 188 51683558 51683639 View Leu AAG cactctcact tctttgtttt 0 0 69.84 50.16 19.68 Both chr13 998 21264811 21264706 View Leu CAA gaggcggcat gctgtatttt 21264773 21264751 71.76 48.08 23.68 Both chr13 65 21292073 21292177 View Leu CAA tttctcgtgt cagtactctt 21292111 21292131 68.92 44.83 24.09 Both chr13 85 22006707 22006812 View Leu CAA tagagcgtgt cagttgcttt 22006745 22006766 66.25 42.92 23.33 Both chr11 1911 58116082 58115976 View Leu CAA ttcagcaagt caactccttt 58116044 58116022 66.74 45.80 20.94 Both chr3 1026 24062029 24061947 View Leu CAG tgtttagtag actgctatct 0 0 59.68 30.33 29.35 tRNAscan chr8 168 39276255 39276337 View Leu CAG tgttcgagca gcctcgcctt 0 0 69.42 41.93 27.49 Both chr1 698 172968745 172968827 View Leu CAG actaccatgt aatacttttt 0 0 75.90 46.89 29.01 Both chr8 1008 97227986 97227904 View Leu CAG gtttccagtt agttgctctt 0 0 75.90 46.89 29.01 Both chr8 414 97227531 97227613 View Leu CAG caactctcat gaattcctgt 0 0 75.90 46.89 29.01 Both chr1 701 172996115 172996197 View Leu CAG ccaaaccgcc gcctcgcctt 0 0 77.22 46.89 30.33 Both chr1 703 173003750 173003832 View Leu CAG ccaaaccgcc gcctcgcctt 0 0 77.22 46.89 30.33 Both chr1 705 173011364 173011446 View Leu CAG ccaaaccgcc gcctcgcctt 0 0 77.22 46.89 30.33 Both chr1 993 173032051 173031969 View Leu CAG atgcaatgta aagttttgta 0 0 77.22 46.89 30.33 Both chr13 952 23545383 23545301 View Leu CAG tatcctgtaa actgccatct 0 0 77.22 46.89 30.33 Both chrX 462 157573066 157573148 View Leu TAA cctcattcag ttagtgactg 0 0 51.87 31.86 20.01 Both chr13 991 21939973 21939891 View Leu TAA tgttatcagt tgtactgctc 0 0 73.91 48.50 25.41 Both chr10 1316 12642451 12642369 View Leu TAA gcacgcctgc aagttgctgt 0 0 77.01 48.40 28.61 Both chr19 638 12085658 12085576 View Leu TAA tctttcaggt aatgtgtttt 0 0 80.01 46.62 33.39 Both chr7 861 127979074 127978993 View Leu TAG acaaatggga catccctaag 0 0 68.14 45.54 22.60 Both chr14 703 51702586 51702505 View Leu TAG cagacagctt gtgttttctt 0 0 70.94 48.78 22.16 Both chr11 401 68937743 68937824 View Leu TAG cttccatgcg ggccagagtt 0 0 72.19 50.81 21.38 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr3 1 3123740 3123812 View Lys CTT gagaggagtt agaagttatt 0 0 50.41 29.38 21.03 Both chr16 267 47250659 47250731 View Lys CTT ctattgagtt agatgttatt 0 0 50.60 31.85 18.75 Both chr16 76 16854357 16854429 View Lys CTT aaaaaaaaaa ccatctatag 0 0 54.97 36.71 18.26 Both chr9 1514 14762949 14762877 View Lys CTT tgagtggcag ccacctgttg 0 0 56.84 43.57 13.27 Both chr11 1752 73950889 73950817 View Lys CTT attacaaaca ggctgcagac 0 0 57.68 29.96 27.72 Both chr13 1041 4223466 4223394 View Lys CTT tctttctgcc ccaaatgttg 0 0 58.04 48.75 9.29 Eufind chr1 1268 112801396 112801324 View Lys CTT aatcgtagct ccaatttgtt 0 0 58.94 40.15 18.79 Both chr5 1627 98470181 98470109 View Lys CTT tatatatatg ccatctttga 0 0 60.02 41.11 18.91 Both chr3 2 3149493 3149565 View Lys CTT gagatcaatt agatgctatt 0 0 62.80 42.89 19.91 Both chr11 2023 48647457 48647385 View Lys CTT ttcacacagc catggtaact 0 0 80.47 57.81 22.66 Both chr13 103 23528209 23528281 View Lys CTT ttgcacatgt caaattaact 0 0 80.47 57.81 22.66 Both chr17 1000 23672371 23672299 View Lys CTT agtgacagtc agatgttact 0 0 80.47 57.81 22.66 Both chr17 82 23670929 23671001 View Lys CTT agtgacagtc agatgttact 0 0 80.47 57.81 22.66 Both chr17 84 23684327 23684399 View Lys CTT tctcatcacc agtaattttg 0 0 80.47 57.81 22.66 Both chr3 292 96232158 96232230 View Lys CTT tttcagaagt catgcttttg 0 0 80.47 57.81 22.66 Both chr3 748 96303507 96303435 View Lys CTT gtgtctcaag cttccttttc 0 0 80.47 57.81 22.66 Both chr12 790 72070179 72070107 View Lys CTT aatcacatct gtgtttcttt 0 0 80.72 58.28 22.44 Both chr9 1035 90021419 90021347 View Lys CTT cataccagct gtttagtttt 0 0 80.72 58.28 22.44 Both chrX 643 132730343 132730271 View Lys CTT actacaagct gtttagtttt 0 0 81.73 61.76 19.97 Both chr8 317 82433177 82433249 View Lys TTT tattagagtt gctacacatt 0 0 43.91 32.95 10.96 Both chr10 885 87292703 87292631 View Lys TTT gatcttaaga ctcagttttt 0 0 61.23 50.59 10.64 Eufind chr13 89 22063657 22063729 View Lys TTT ctatgtgaga ctgattctca 0 0 78.73 57.37 21.36 Both chr13 83 21999809 21999881 View Lys TTT ctttctaaga gaaaggtgat 0 0 83.31 61.95 21.36 Both chr7 1276 29579079 29579007 View Lys TTT tgactgaaga gaaagatggt 0 0 83.31 61.95 21.36 Both chr1 1184 134930976 134930904 View Lys TTT ccctcagagc gctacaaatt 0 0 83.80 62.78 21.02 Both chr1 485 134930539 134930611 View Lys TTT ttccaccagg cttgtctttt 0 0 83.80 62.78 21.02 Both chr11 1816 68938750 68938678 View Lys TTT tttgctaaga cttagctttt 0 0 83.80 62.78 21.02 Both chr13 1000 21260016 21259944 View Lys TTT acccctcaga ctactgtttt 0 0 83.80 62.78 21.02 Both chr19 107 12080529 12080601 View Lys TTT gcagccatga ctgctatttt 0 0 83.80 62.78 21.02 Both chr19 639 12084258 12084186 View Lys TTT ctcgctaaga gaagttgttt 0 0 83.80 62.78 21.02 Both   chr11 1132 121825448 121825376 View Met CAT tactatgggt aactcaggtt 0 0 54.05 47.80 6.25 Both chr13 82 21998980 21999051 View Met CAT taccttatat gtttgcattt 0 0 62.33 37.92 24.41 Eufind chr15 876 69227124 69227053 View Met CAT tgaaggcatc acttgtcttt 0 0 62.68 39.98 22.70 Eufind chr15 355 88471962 88472034 View Met CAT aatgacgggt gccccagtgt 0 0 67.55 49.38 18.17 Eufind chr13 108 23591949 23592020 View Met CAT tgtctagagg gagctttttt 0 0 68.98 40.96 28.02 Both chr13 111 23609561 23609632 View Met CAT gctgcgcgtc acttgtcttt 0 0 68.98 40.96 28.02 Both chr13 78 21802863 21802934 View Met CAT aggcagctct aggtgcagct 0 0 68.98 40.96 28.02 Both chr13 90 22066901 22066972 View Met CAT ttcacgttct tgagatattt 0 0 68.98 40.96 28.02 Both chr13 947 23622288 23622217 View Met CAT ctctttaagt tctggacttt 0 0 68.98 40.96 28.02 Both chr13 983 22023109 22023038 View Met CAT atctcgcagc cagagctttt 0 0 68.98 40.96 28.02 Both chr3 792 90279853 90279782 View Met CAT accagtgggt tcggaggctt 0 0 68.98 40.96 28.02 Both chr13 99 23409335 23409407 View Met CAT aggcctcgta gtttttgcta 0 0 74.21 51.29 22.92 Both chr13 994 21418658 21418586 View Met CAT aatactcagt gatgttttag 0 0 75.13 53.92 21.21 Both chr13 61 21259473 21259545 View Met CAT agcaccacgt gttgtttttt 0 0 76.58 56.44 20.14 Both chr13 999 21261628 21261556 View Met CAT gacaacgggt acctcagctt 0 0 76.58 56.44 20.14 Both chr15 913 57807610 57807538 View Met CAT gcacataggt caatactttt 0 0 79.85 59.49 20.36 Both chr8 783 124103201 124103129 View Met CAT ctgctaagga tcctgcattg 0 0 79.85 59.49 20.36 Both chr10 1101 62657080 62656988 View Met CAT tcttccaggt gactaacact 62657042 62657024 53.86 45.91 7.95 Both   chr13 988 21974826 21974754 View Phe GAA ttgttaccga aaggttcatt 0 0 82.45 60.84 21.61 Both chr19 108 12083035 12083107 View Phe GAA tattatctgt aagttttatt 0 0 82.59 59.44 23.15 Both chr10 961 79711781 79711709 View Phe GAA acagcgcgtc agtgttttta 0 0 84.19 62.58 21.61 Both chr13 60 21253274 21253346 View Phe GAA gctgggcgtg accgcgtgca 0 0 84.19 62.58 21.61 Both chr14 457 118488819 118488747 View Phe GAA caggcacagc gttaactttt 0 0 84.19 62.58 21.61 Both chr19 106 12076726 12076798 View Phe GAA ttcaagcaca gtgattttat 0 0 84.19 62.58 21.61 Both chr5 1315 125886497 125886425 View Phe GAA agcaacagcc gctcgtactt 0 0 84.19 62.58 21.61 Both   chr1 284 78294370 78294441 View Pro AGG ggaacgttaa tcttctacat 0 0 48.57 36.61 11.96 Both chr1 672 167571765 167571836 View Pro AGG gctacacatc tgtagctttt 0 0 75.92 53.85 22.07 Both chr13 957 23528934 23528863 View Pro AGG gtttacatct aagtttttat 0 0 75.92 53.85 22.07 Both chr14 705 51684560 51684489 View Pro AGG gatacccatc tacttttgaa 0 0 75.92 53.85 22.07 Both chr3 93 51163329 51163400 View Pro AGG tgccttacgt aattttatct 0 0 75.92 53.85 22.07 Both chr6 46 29338824 29338895 View Pro AGG aaccgccagt tgcttatcat 0 0 75.92 53.85 22.07 Both chr7 977 105964257 105964186 View Pro AGG tactcacagc aaacattttg 0 0 75.92 53.85 22.07 Both chr1 1022 167572473 167572402 View Pro CGG caccgagagc tggttttact 0 0 76.52 54.46 22.06 Both chr11 396 68853887 68853958 View Pro CGG gtcatacgtc catcttactt 0 0 76.52 54.46 22.06 Both chr17 83 23677882 23677953 View Pro CGG gcagttgtgt tgaatggggt 0 0 76.52 54.46 22.06 Both chr17 998 23675804 23675733 View Pro TGG aaacaatgct agtaccaagg 0 0 52.48 29.34 23.14 Both chr11 372 67104641 67104712 View Pro TGG aacactagat cccttttcct 0 0 59.18 42.88 16.30 Both chrX 931 14279813 14279742 View Pro TGG tgcttccagt agctactttt 0 0 61.11 39.33 21.78 Both chr11 207 48669782 48669853 View Pro TGG cacatcagct aagcatttta 0 0 76.15 54.09 22.06 Both chr14 192 51710322 51710393 View Pro TGG gctaccacat tgtacttttt 0 0 76.15 54.09 22.06 Both chr17 996 23683514 23683443 View Pro TGG ttgtcaccgt agttttttag 0 0 76.15 54.09 22.06 Both chr3 92 51162276 51162347 View Pro TGG taccctcagc agctactttt 0 0 76.15 54.09 22.06 Both chr7 441 105963925 105963996 View Pro TGG cctagcagct cacttttcct 0 0 76.24 54.23 22.01 Both   chr5 13 5627681 5627751 View SeC TCA atccctggat agatgttatt 0 0 53.42 0.00 0.00 Eufind   chr7 86 19886593 19886678 View SeC(e) TCA agctcctttc gggagtatct 0 0 75.67 0.00 0.00 Eufind   chrX 493 163347746 163347665 View Ser AGA aaaataagca gtcaaaagga 0 0 52.84 32.82 20.02 Both chr11 394 68850979 68851060 View Ser AGA cagaggttct tctaggattt 0 0 88.01 56.90 31.11 Both chr13 86 22011084 22011165 View Ser AGA agttccagct tcatggtctg 0 0 88.01 56.90 31.11 Both chr13 88 22019726 22019807 View Ser AGA ttaattccat gtaatcttat 0 0 88.01 56.90 31.11 Both chr13 950 23592907 23592826 View Ser AGA tactgcactt attgtgggtt 0 0 88.01 56.90 31.11 Both chr13 978 22032864 22032783 View Ser AGA ctctattcat ggctctttta 0 0 88.01 56.90 31.11 Both chr4 16 10801211 10801292 View Ser AGA agcatcacca gaagggaatg 0 0 88.01 56.90 31.11 Both chr13 980 22029044 22028963 View Ser AGA actatggtct ggtgttttgt 0 0 88.50 57.39 31.11 Both chr5 1135 144108871 144108745 View Ser AGA gtgaggggct aaaatgtcct 144108835 144108785 21.10 10.55 10.55 Both chr13 972 22114369 22114288 View Ser CGA gctctggtta taagaaagct 0 0 86.89 57.25 29.64 Both chr10 688 127895601 127895520 View Ser CGA agttttggga gcagtttttc 0 0 89.14 63.50 25.64 Both chr11 400 68924421 68924502 View Ser CGA gccgcacgcg ctagtagttt 0 0 92.09 62.91 29.18 Both chr1 791 183986139 183986220 View Ser GCT aaagtcaggg gaagcggctt 0 0 64.07 45.59 18.48 Both chr13 992 21584795 21584714 View Ser GCT ttcttcacag actgacaaac 0 0 84.39 52.32 32.07 Both chr11 1821 68876625 68876544 View Ser GCT gagtcgtgtg tctgtagctt 0 0 85.34 57.77 27.57 Both chr13 115 23613739 23613820 View Ser GCT cagtaggtat ttcagtttac 0 0 85.34 57.77 27.57 Both chr13 970 22142636 22142555 View Ser GCT tgcatgctct gtctgggtct 0 0 85.34 57.77 27.57 Both chr19 711 5038385 5038304 View Ser GCT tcgtgtgtgg gtcctgtttt 0 0 85.83 58.25 27.58 Both chr2 1509 118872567 118872486 View Ser GCT tagcttctgg aaagtgtctt 0 0 86.00 55.46 30.54 Both chr13 976 22086140 22086059 View Ser GCT tggcagagag tctccatatt 0 0 86.80 59.22 27.58 Both chr11 832 100399472 100399544 View Ser GGA gccaagcaca gtgattttat 0 0 70.77 52.42 18.35 Both chr13 112 23610015 23610096 View Ser TGA acgcgctctt tgaatgtatt 0 0 88.73 57.62 31.11 Both chr13 984 22016885 22016804 View Ser TGA tagaggaaag gttttaccag 0 0 88.73 57.62 31.11 Both chr10 1095 62892305 62892224 View Ser TGA tttctccgta gaagcgggtg 0 0 90.86 62.33 28.53 Both   chr13 79 21887668 21887750 View Sup TTA tgctatcagt ttagtgaccg 0 0 66.56 40.38 26.18 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr13 971 22122042 22121969 View Thr AGT cctgaagagg ctgattgttt 0 0 79.48 56.71 22.77 Both chr14 628 59437063 59436990 View Thr AGT ggaggggggc gagtgcttgc 0 0 79.70 58.27 21.43 Both chr13 996 21341136 21341063 View Thr AGT tctttgtaag ttaggagact 0 0 80.06 59.71 20.35 Both chr13 81 21947890 21947963 View Thr AGT ctccagttct tttcttcttt 0 0 81.31 61.75 19.56 Both chr11 399 68923967 68924040 View Thr AGT cattctcgtt ggtttatgtg 0 0 81.60 62.00 19.60 Both chr13 104 23542491 23542564 View Thr AGT aaagcgtgtt ttttgtggtt 0 0 83.05 63.49 19.56 Both chr11 1822 68876319 68876246 View Thr AGT acgtcacgta ttgtggtttc 0 0 84.06 64.45 19.61 Both chr11 395 68851355 68851428 View Thr AGT ttttgccact ttgtatgccc 0 0 84.06 64.45 19.61 Both chr7 1213 36019862 36019789 View Thr AGT ccgtgcgggc gagtgctacc 0 0 84.06 64.45 19.61 Both chr18 633 46446154 46446083 View Thr CGT gtacactgct tccccctccc 0 0 26.36 13.61 12.75 Both chr13 72 21356449 21356522 View Thr CGT tctttcaggt ggctgcactt 0 0 78.56 62.34 16.22 Both chr11 550 79518152 79518223 View Thr CGT tcggctgtca gcgtttggaa 0 0 79.77 59.88 19.89 Both chr13 75 21414682 21414755 View Thr CGT gccacagcgt tctgttttca 0 0 80.32 60.39 19.93 Both chr16 50 13437416 13437487 View Thr CGT cctcaacgca gccctctttc 0 0 80.42 57.57 22.85 Both chr14 190 51708325 51708397 View Thr TGT tgatctgtgt gagtctacct 0 0 78.79 56.36 22.43 Both chr11 206 48667121 48667193 View Thr TGT atttgtgact taaggttact 0 0 79.46 56.92 22.54 Both chr14 704 51684915 51684843 View Thr TGT cgcaggtgag tcagcttctt 0 0 79.46 56.92 22.54 Both chr13 73 21367825 21367898 View Thr TGT tacagcagtt atcttttttc 0 0 85.34 65.41 19.93 Both   chr10 1282 23496960 23496889 View Trp CCA atgttggagt tgaatacctg 0 0 66.12 52.49 13.63 Eufind chr10 857 90644228 90644157 View Trp CCA agcccagcag tagtttttcg 0 0 71.65 49.85 21.80 Both chr13 107 23589975 23590046 View Trp CCA cttcttgggt gtgttttatg 0 0 74.00 52.21 21.79 Both chr13 109 23598388 23598459 View Trp CCA ccgcagctgt agtgttttgg 0 0 74.00 52.21 21.79 Both chr11 1880 61221489 61221418 View Trp CCA agcttgctgt agttaggttt 0 0 74.80 53.00 21.80 Both chr11 1820 68877068 68876997 View Trp CCA gtggccggcc gctctttttt 0 0 74.81 54.94 19.87 Both chr11 398 68855328 68855399 View Trp CCA gccacaggga tctgtgttct 0 0 74.81 54.94 19.87 Both chr11 1849 62559588 62559517 View Trp CCA atgtatcaat tgagtacctg 0 0 76.45 54.66 21.79 Both   chr3 27 19528355 19528447 View Tyr GTA ttcttgtgtc gacagtaatg 19528392 19528411 70.98 44.57 26.41 Both chr3 28 19528782 19528870 View Tyr GTA cttgccgctc aagagcttgc 19528819 19528834 73.00 46.59 26.41 Both chr13 961 23517603 23517515 View Tyr GTA tgggcgtctt acgatctttt 23517566 23517551 79.16 52.75 26.41 Both chr13 101 23518374 23518461 View Tyr GTA tcagcgtctt atgatctttt 23518411 23518425 78.12 51.71 26.41 Both chr13 960 23519049 23518964 View Tyr GTA tatatatctc ggtgcctttt 23519012 23519000 78.99 52.58 26.41 Both chr13 959 23520695 23520607 View Tyr GTA atttctgagg agggagtgtt 23520658 23520643 65.73 48.16 17.57 Both chr13 958 23524946 23524859 View Tyr GTA acacgtggat acccttgttt 23524909 23524895 78.61 52.21 26.40 Both chr13 106 23558945 23559034 View Tyr GTA tacatggtat ggtctgtttt 23558982 23558998 77.38 50.97 26.41 Both chr5 109 31190456 31190544 View Tyr GTA cgcagcgggg cttcgtgcac 31190493 31190508 78.79 52.38 26.41 Both chr14 191 51709164 51709253 View Tyr GTA cttgtgcttc gtagcctgtc 51709201 51709217 74.14 47.73 26.41 Both   chr4 1183 138986492 138986421 View Val AAC aaagatagct aaaggaaaca 0 0 64.06 43.62 20.44 Eufind chr13 965 23493014 23492942 View Val AAC atcttggggt tttttttttt 0 0 84.35 61.22 23.13 Both chr13 974 22107732 22107660 View Val AAC ccgcgtgggt cgttatattt 0 0 85.07 59.88 25.19 Both chr13 93 23377270 23377342 View Val AAC tcttgagggt ttactttttt 0 0 85.09 60.25 24.84 Both chr13 962 23505189 23505117 View Val AAC ggctgtgggt tggttgcttt 0 0 85.09 60.25 24.84 Both chr13 95 23390650 23390722 View Val AAC agttcagggt gtgcctttct 0 0 85.92 60.30 25.62 Both chr11 208 48670139 48670211 View Val AAC taagccgtga agacacttgt 0 0 86.79 61.60 25.19 Both chr3 48 30500192 30500264 View Val AAC gtgcaaccaa tatcttttaa 0 0 86.79 61.60 25.19 Both chr3 928 59278919 59278848 View Val CAC cttacatgtt actaagctta 0 0 61.96 35.82 26.14 Both chr13 964 23504018 23503946 View Val CAC cacctgtcgt tttctacttt 0 0 69.25 55.81 13.44 Both chr17 392 59208131 59208203 View Val CAC ttttcagtga gtttgatatt 0 0 71.41 59.45 11.96 Eufind chr13 97 23391991 23392063 View Val CAC cttgctgtgt acacttgtca 0 0 84.96 61.82 23.14 Both chr6 10 10050371 10050443 View Val CAC attgaatgtg agtagtctgg 0 0 86.14 60.17 25.97 Both chr1 710 173041574 173041646 View Val CAC ttgccagcca gcaactttgt 0 0 87.39 62.20 25.19 Both chr11 204 48632044 48632116 View Val CAC agaatgtgta acttttagac 0 0 87.39 62.20 25.19 Both chr13 91 22118417 22118489 View Val CAC ccgcggtgtt atgactcttt 0 0 87.39 62.20 25.19 Both chr13 954 23538083 23538011 View Val CAC catccagcga gtttggtact 0 0 87.39 62.20 25.19 Both chr3 284 96136663 96136735 View Val CAC ctcccaggtg agcagtcttt 0 0 87.39 62.20 25.19 Both chr13 98 23399498 23399570 View Val CAC gggtcagagg gtactgtttt 0 0 87.78 62.94 24.84 Both chr6 651 135217866 135217793 View Val GAC gaaggaggtt catggctaca 0 0 29.47 24.47 5.00 Both chr19 109 12086421 12086493 View Val TAC tcctccgccc cgtggtgtgc 0 0 82.67 57.63 25.04 Both chr19 110 12086756 12086828 View Val TAC tgtggcacgt gtgtaacttt 0 0 82.67 57.63 25.04 Both chrX 459 157204042 157204114 View Val TAC ccttcgtggt tagctgcaaa 0 0 82.67 57.63 25.04 Both

---

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.