GtRNAdb

tRNAscan-SE Analysis of Macaca mulatta (Rhesus Jan 2006)

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 2 19488468 19488538 Gly CCC ccaaagaggg agagctgttg0 0 78.80 59.1019.70 Both
chr1 3 19526041 19526114 Asn GTT gggaacggtt attcttggaa0 0 82.24 58.9723.27 Both
chr1 5 49217887 49217959 Met CAT agatacgtct gctggtattt0 0 62.16 44.8817.28 tRNAscan
chr1 6 96873399 96873483 Arg TCT tccaacaggt taacgctttt96873436 96873447 71.18 52.8818.30 Both
chr1 8 126242760 126242831 Glu CTC cttaacagct gaaacgattt0 0 76.61 53.9422.67 Both
chr1 9 126244138 126244209 Gly TCC cgtttcagaa ggtttggtct0 0 73.26 52.8320.43 Both
chr1 10 126245071 126245142 His GTG ctggtggctc cgttactcct0 0 64.63 37.1827.45 Both
chr1 11 126246128 126246200 Lys CTT gctaacggtt ctgcgatttt0 0 80.47 57.8122.66 Both
chr1 12 126299939 126300012 Asn GTT cacagtacct cttggtgaat0 0 85.28 62.0123.27 Both
chr1 14 126472180 126472251 His GTG cctgtggctc aagttgttcg0 0 58.31 30.8627.45 Both
chr1 15 127429049 127429120 Gln CTG tgtattgtgt tactgcttag0 0 71.61 48.3223.29 Both
chr1 18 127747657 127747730 Asn GTT acccattaga ggcagctttt0 0 56.32 46.1010.22 Both
chr1 19 127860417 127860488 Gln CTG tgcaccgtga ttctgtttaa0 0 70.16 46.8723.29 Both
chr1 20 132182618 132182689 Met CAT gccttcagat tcggaatttt0 0 68.98 40.9628.02 Both
chr1 22 140040022 140040104 Leu CAG ccggcgcgcc acccgacctt0 0 77.22 46.8930.33 Both
chr1 23 140041776 140041846 Gly GCC taccatcggt gcacgccctc0 0 82.15 62.5819.57 Both
chr1 24 140101782 140101853 Gly TCC atgcttagcg gatttttttg0 0 73.26 52.8320.43 Both
chr1 25 140102746 140102817 Asp GTC tccgaagtcg atgacgggtt0 0 72.92 48.3824.54 Both
chr1 26 140111150 140111223 Asn GTT ttcaacgtcc gaagtgcagt0 0 83.66 60.3923.27 Both
chr1 28 165925556 165925628 Lys TTT tgatacggga tggtgttttc0 0 83.80 62.7821.02 Both
chr1 31 197453474 197453545 Pro CGG tgccgagagc aggcttttac0 0 76.52 54.4622.06 Both
chr1 33 207817895 207817789 Leu CAA acttccgagt cattcgtttt207817857 207817835 65.96 45.5520.41 Both
chr1 34 207817508 207817437 Glu CTC tgccatggcg aggagctttt0 0 76.61 53.9422.67 Both
chr1 36 197454148 197454077 Pro AGG gaagcatgtc tcttttacgt0 0 75.92 53.8522.07 Both
chr1 38 174099780 174099708 Lys TTT agtaaaagaa taacttgtgg0 0 83.80 62.7821.02 Both
chr1 39 165926125 165926053 Lys TTT ctgccgaagc tttgtagttt0 0 83.80 62.7821.02 Both
chr1 41 147763700 147763628 Thr TGT gtttcacgtg cctgtcggct0 0 83.03 60.4922.54 Both
chr1 42 140101083 140101001 Leu CAG tctaacgggt atgcatattt0 0 75.90 46.8929.01 Both
chr1 43 140094738 140094668 Gly GCC ttctgtagta cgctttattt0 0 81.62 61.5720.05 Both
chr1 44 140039417 140039346 Asp GTC gtggccgtcg gcagcagtcc0 0 72.92 48.3824.54 Both
chr1 45 140038723 140038652 Gly TCC gcgccgtgcg gcgggccgac0 0 73.26 52.8320.43 Both
chr1 46 140038364 140038293 Glu CTC aggccgtctc gccttccttc0 0 76.61 53.9422.67 Both
chr1 47 140026886 140026813 Asn GTT actcaggtca gttagcactt0 0 80.50 57.2323.27 Both
chr1 48 140005223 140005151 Val CAC ctgtcactta aagtgtggtg0 0 87.39 62.2025.19 Both
chr1 49 137735757 137735684 Arg TCT gtgtggtgag gtcacctggc0 0 76.29 56.9719.32 Both
chr1 50 128403129 128403058 Ala AGC aagaattaaa caaaggtttt0 0 67.52 46.4221.10 Both
chr1 52 128113414 128113341 Asn GTT gcttagctgt tctgtaccct0 0 72.91 53.4219.49 Both
chr1 53 128085320 128085248 Val CAC caagtgtgtg ggtctccttt0 0 87.39 62.2025.19 Both
chr1 54 128081397 128081327 Gly CCC gtacaggaag agaggttttt0 0 80.05 60.0020.05 Both
chr1 55 128073233 128073162 Glu TTC ctcgtgtgtc ttgttttgca0 0 69.44 47.0322.41 Both
chr1 56 128070415 128070343 Asn GTT aatcgaggtt tacttttaaa0 0 70.08 49.8020.28 Both
chr1 57 128029176 128029103 Asn GTT agcagtccct cttattgcaa0 0 82.24 58.9723.27 Both
chr1 59 127960449 127960378 His GTG cctgtggctc gcgtcgtttg0 0 64.63 37.1827.45 Both
chr1 60 127949972 127949901 Glu TTC tttttatgtc ctgttttgca0 0 72.33 49.6622.67 Both
chr1 62 127887882 127887809 Asn GTT gatagttctt cttattgcaa0 0 80.07 58.8121.26 Both
chr1 63 127840348 127840277 Glu TTC cctgtcttct cacgttttgc0 0 67.70 45.3022.40 Both
chr1 64 127834211 127834140 His GTG cctgtggctc gcgttgtttg0 0 64.70 37.3027.40 Both
chr1 65 127757750 127757677 Asn GTT agtagtgctt cttagataga0 0 83.22 59.9623.26 Both
chr1 67 127661746 127661676 Gly CCC gtagggagag agcagcttgc0 0 69.82 51.1218.70 Both
chr1 68 127655909 127655838 Glu TTC tttccctatc ttgttttgca0 0 68.58 50.2318.35 Both
chr1 69 127653043 127652970 Asn ATT aactgaggtt tccttttaaa0 0 56.10 45.8810.22 Both
chr1 70 127525387 127525314 Asn GTT gaaagcactt cttactgcaa0 0 82.24 58.9723.27 Both
chr1 71 127405264 127405193 Glu TTC tttgtcggct cgtgttttgc0 0 60.65 42.3018.35 Both
chr1 72 127399377 127399306 His GTG cctgtggctg acgtcgttcg0 0 64.63 37.1827.45 Both
chr1 74 57812122 57812050 Lys CTT tggtgtaaaa ccaaattttt0 0 66.88 45.2021.68 Both
chr1 76 19475317 19475247 Gly CCC ccaaagaggg agagtctttt0 0 78.80 59.1019.70 Both
chr1 78 19465077 19465004 Asn GTT aaatgaggtt tgattttaaa0 0 70.74 47.4823.26 Both
chr1 79 19449600 19449527 Asn GTT gggagcggtt actcttggaa0 0 82.24 58.9723.27 Both
 
chr2 3 90844391 90844463 Arg ACG taccagcttg cagtgctcgt0 0 68.07 51.1816.89 Both
chr2 4 102003563 102003633 Asp GTC ggataggcgg gctgttgatg0 0 55.81 37.7018.11 Eufind
chr2 6 155445173 155445244 Cys GCA ttactggtgt gtgcatttgt0 0 74.20 55.0219.18 Both
chr2 7 155447868 155447939 Cys GCA ttggtgtcaa atggcatact0 0 75.06 57.3417.72 Both
chr2 10 117245441 117245369 Val AAC gtggagcggg gcccgacaga0 0 86.79 61.6025.19 Both
chr2 12 85825320 85825249 Ala AGC aaaaaaaaat gtctggccgg0 0 69.88 54.8615.02 Eufind
chr2 13 73813613 73813542 Glu TTC tgactgtccc gtctgctttt0 0 65.45 48.3917.06 Both
 
chr3 1 46677328 46677399 Trp CCA attcttccaa aacatatgat0 0 74.00 52.2121.79 Both
chr3 2 46678585 46678656 Trp CCA atgtttccaa cagctgtcgc0 0 62.19 44.3417.85 Both
chr3 3 166112491 166112562 Pro AGG aattgcctgt tgctttttct0 0 75.92 53.8522.07 Both
chr3 5 176836850 176836922 Arg CCT actcacagaa gcctgagatt0 0 67.28 54.1813.10 Both
chr3 6 186633850 186633921 Cys GCA aatggcgaca agttttcttc0 0 77.65 58.4819.17 Both
chr3 7 186653459 186653530 Cys GCA agtcaggcct cctgttttgt0 0 74.20 55.0219.18 Both
chr3 8 186860653 186860724 Cys GCA tagaagctga ggaaagagtc0 0 66.30 48.1118.19 Both
chr3 9 186868952 186869023 Cys GCA atgacaagta actgcacttt0 0 71.19 49.1622.03 Both
chr3 12 186889972 186890043 Cys GCA gtctacgact acaccattct0 0 67.09 53.4713.62 Both
chr3 14 186925708 186925779 Cys GCA ccccaggcct accctgtttt0 0 73.11 53.9419.17 Both
chr3 15 186956639 186956710 Cys GCA caccaggcaa actgccattt0 0 74.26 55.0219.24 Both
chr3 16 187007484 187007555 Cys GCA acttctgcca gctgtcttct0 0 74.20 55.0219.18 Both
chr3 17 186991778 186991707 Cys GCA tgtgggccgt actggttttc0 0 73.73 55.8117.92 Both
chr3 18 186938363 186938291 Cys GCA ataaccaggt ctctatttca0 0 69.87 50.6919.18 Both
chr3 19 186893958 186893887 Cys GCA gcaattaaat ccctattttc0 0 75.20 56.0219.18 Both
chr3 20 186731903 186731832 Cys GCA tcttgctgga gcgcgcagtg0 0 75.26 56.0219.24 Both
chr3 22 186691676 186691605 Cys GCA tgagtacctc ttgttattac0 0 74.20 55.0219.18 Both
chr3 23 186689943 186689872 Cys GCA tgagtacctt ttgtcactac0 0 74.20 55.0219.18 Both
chr3 25 186672372 186672301 Cys GCA tagcaaaact agtattttaa0 0 71.19 49.1622.03 Both
 
chr4 1 18880794 18880865 Gln CTG caggaaggag ttcatattgg0 0 57.24 40.3216.92 Both
chr4 2 26274054 26274125 Met CAT gtgatggagg gacatttttt0 0 68.98 40.9628.02 Both
chr4 3 26283822 26283894 Arg TCG actcggaaag aacggggtgc0 0 69.55 49.6719.88 Both
chr4 4 26305419 26305491 Arg TCG tctagcccga tttgggggcc0 0 72.33 51.1321.20 Both
chr4 5 26310192 26310273 Ser AGA tttctcactg gaagtggact0 0 88.01 56.9031.11 Both
chr4 6 26310736 26310808 Arg ACG gctcgtggga ttgggttttt0 0 72.37 52.4919.88 Both
chr4 7 26554816 26554898 Leu CAG cgacacggca ggtgctagtt0 0 77.22 46.8930.33 Both
chr4 8 26571735 26571807 Arg ACG ccaatatgtg gtatatgtgc0 0 72.37 52.4919.88 Both
chr4 9 26572298 26572370 Val CAC cccaccgtga gctttttttt0 0 87.39 62.2025.19 Both
chr4 10 26587158 26587229 Ala CGC ttgcaaggat agtccttttt0 0 74.81 51.2323.58 Both
chr4 11 26587778 26587851 Ile AAT agatgtaggt cgtttctttt0 0 80.66 62.1718.49 Both
chr4 12 26588905 26588976 Pro AGG atgatcaggc acgttttgtt0 0 75.92 53.8522.07 Both
chr4 13 26590649 26590721 Lys CTT cctttcacaa ctttgtctta0 0 70.76 57.4113.35 Eufind
chr4 14 26609410 26609500 Tyr GTA ttatgtgaat gttcatgttt26609447 26609464 78.22 51.8126.41 Both
chr4 16 26617748 26617837 Tyr GTA aacttcgtgt cggtagtttt26617785 26617801 79.64 53.2426.40 Both
chr4 17 26628674 26628762 Tyr GTA gcaacaacat gttccctttt26628711 26628726 71.82 47.1224.70 Both
chr4 18 26704752 26704824 Ala AGC cccctgatgt agctttatta0 0 62.45 37.8024.65 Both
chr4 19 26714337 26714409 Ala AGC cccctgatgt agctttatta0 0 62.45 37.8024.65 Both
chr4 20 26824558 26824651 Ile TAT ggggctgtgt ttgttttcca26824596 26824615 67.72 39.5328.19 Both
chr4 21 26860286 26860357 Pro CGG acttctaagt acttcatttt0 0 76.52 54.4622.06 Both
chr4 22 26869893 26869974 Ser GCT agtgtatcga ggtgaggtct0 0 88.12 59.2228.90 Both
chr4 23 26916601 26916673 Val CAC catggaacga catttaccag0 0 56.70 45.1611.54 Both
chr4 24 26924010 26924081 His GTG ctggtggcgt gtaccttgac0 0 64.63 37.1827.45 Both
chr4 25 26928192 26928265 Thr AGT gcccaagagg tagttgttca0 0 80.30 60.8519.45 Both
chr4 26 26968364 26968445 Ser CGA cccttagagg cttctgttgt0 0 85.83 56.6929.14 Both
chr4 27 26973193 26973265 Arg ACG acgcaaccgc agcgctaatt0 0 72.37 52.4919.88 Both
chr4 28 26993094 26993176 Leu TAA atggcttatc ggtgttggtg0 0 79.31 47.6731.64 Both
chr4 29 27032538 27032611 Ile AAT tttggctgtt catgttttcc0 0 56.82 50.336.49 Eufind
chr4 30 27049921 27049993 Val TAC gtgcacatcg gcttgtaatt0 0 77.74 51.1826.56 Both
chr4 31 27053182 27053255 Ile AAT aatcgggagc ctcgctttct0 0 78.92 60.4418.48 Both
chr4 32 27054725 27054796 Gln CTG cgcagatgta tagtattttg0 0 63.78 46.7317.05 Both
chr4 33 27057009 27057090 Ser GCT cggcccgaag actcttttct0 0 86.80 59.2227.58 Both
chr4 34 27239596 27239677 Ser AGA ctccattcgt gatgttttac0 0 88.01 56.9031.11 Both
chr4 35 27240310 27240381 Asp GTC tcacgtcagt gagacttcag0 0 72.92 48.3824.54 Both
chr4 36 27258355 27258436 Ser AGA ttatacagct gaatgttttt0 0 88.01 56.9031.11 Both
chr4 37 27265311 27265392 Ser AGA gtgaggccgt agctaacaag0 0 70.66 52.0018.66 Eufind
chr4 38 27265995 27266066 Asp GTC tctcaggtct aaaagtagct0 0 72.92 48.3824.54 Both
chr4 39 27282126 27282197 Gln CTG gctgtagtga gaggtttttg0 0 73.65 50.3623.29 Both
chr4 40 27293421 27293502 Ser AGA gatccttcac gtccgttcct0 0 88.50 57.3931.11 Both
chr4 41 27306734 27306815 Ser TGA atacaggcgg gttttaccag0 0 88.73 57.6231.11 Both
chr4 42 27324652 27324738 Arg TCT cgcgcaagca gatcttgcgt27324689 27324702 69.29 50.2119.08 Both
chr4 43 27341540 27341612 Lys TTT ttgcacgagg ttaagcatag0 0 81.41 62.4318.98 Both
chr4 44 27388146 27388218 Thr CGT cttttaacgt gtgcagacta0 0 46.45 27.9918.46 Both
chr4 45 27401464 27401557 Ile TAT aagaaagcat tgttttcttc27401502 27401521 68.23 40.0328.20 Both
chr4 46 27433833 27433906 Ile AAT atatctgcgt ctggattatc0 0 80.66 62.1718.49 Both
chr4 47 27446102 27446174 Val AAC ctaacgccgg cgtggactgg0 0 87.28 62.4424.84 Both
chr4 48 27450829 27450902 Ile AAT cctgtcatct attattcact0 0 80.66 62.1718.49 Both
chr4 49 27497117 27497190 Thr AGT atacaggtga cttatttctt0 0 79.86 59.2320.63 Both
chr4 50 27554907 27554978 Met CAT acatttcacc aggtggtggc0 0 68.98 40.9628.02 Both
chr4 51 27917335 27917416 Ser GCT ttcttcgtgc gctgctttac0 0 85.34 57.7727.57 Both
chr4 52 28278404 28278497 Ile TAT tatctccgtg gttttactat28278442 28278461 65.72 37.5228.20 Both
chr4 53 28330530 28330601 Gln TTG tcttgtggtt ttcaaaggtg0 0 71.88 48.9422.94 Both
chr4 54 28347353 28347424 Ala AGC gcctacggtt ccagttttgg0 0 76.69 53.0523.64 Both
chr4 55 28379727 28379798 Ala TGC tattcttgct ctaggtgcag0 0 76.14 57.1019.04 Both
chr4 56 28443045 28443116 Ala AGC acagcttttg tgtatttggc0 0 71.93 51.0820.85 Both
chr4 57 28450540 28450611 Ala AGC gtcccggaga cttggtggtg0 0 77.18 53.3823.80 Both
chr4 58 28457187 28457260 Thr AGT agtttccgtg cggttggtca0 0 81.87 65.6516.22 Both
chr4 60 28462413 28462484 Ala CGC ttcgcgggca gctggatatt0 0 70.09 49.5520.54 Both
chr4 61 28479364 28479436 Lys TTT tcgtacgagg aactcgtcat0 0 68.48 60.018.47 Both
chr4 62 28495253 28495325 Phe GAA ttacggagta gcttattttg0 0 84.19 62.5821.61 Both
chr4 63 28605461 28605533 Arg CCG ttcggcggtt tcgtttttcg0 0 69.88 52.7917.09 Both
chr4 64 28672826 28672930 Leu CAA tgtcccaggt catgaatttt28672864 28672885 69.10 45.6623.44 Both
chr4 65 28676666 28676738 Met CAT gaagacagtt acgcatccgt0 0 76.58 56.4420.14 Both
chr4 66 28682716 28682788 Lys TTT tcttcgagaa taagttgcgg0 0 83.80 62.7821.02 Both
chr4 67 28702894 28702965 Glu CTC gtttgtaact agaagctgtt0 0 76.61 53.9422.67 Both
chr4 68 28709483 28709564 Leu AAG cacgacccac agcacttttc0 0 68.19 48.5119.68 Both
chr4 71 82106566 82106638 Lys TTT ggccaggagt tttgtggttt0 0 70.14 55.4014.74 Both
chr4 72 138168495 138168566 Glu CTC ccaaataagt actttatttt0 0 72.69 50.0222.67 Both
chr4 73 119458593 119458511 Leu TAA gcatgcctgt gctcaaggtt0 0 80.77 49.6631.11 Both
chr4 75 75047751 75047679 Phe GAA tttacgagta gaaacaggtc0 0 62.87 48.8714.00 Both
chr4 76 28702440 28702368 Phe GAA cgtgggcgga gaaaagcgcc0 0 84.19 62.5821.61 Both
chr4 77 28684724 28684652 Met CAT tttgctgtct gctgctattt0 0 76.58 56.4420.14 Both
chr4 78 28675794 28675713 Leu AAG gcctgcgggc gagtgagttt0 0 69.84 50.1619.68 Both
chr4 79 28673439 28673368 Gln CTG tgctaaggag ttcatatttc0 0 73.65 50.3623.29 Both
chr4 80 28625129 28625025 Leu CAA cacgcagggt catgattttc28625091 28625070 67.20 43.7623.44 Both
chr4 81 28591551 28591480 Ala AGC caagcgcgag gggttttttt0 0 77.18 53.3823.80 Both
chr4 82 28566219 28566148 Ala AGC gtttcgataa gttgtttttg0 0 77.18 53.3823.80 Both
chr4 83 28551521 28551448 Phe GAA acctagggta gatgtctttt0 0 70.49 49.6120.88 Both
chr4 84 28545136 28545065 Ala TGC ctttaagcaa agtgatggtt0 0 70.95 44.6026.35 Both
chr4 85 28535226 28535154 Phe GAA gtccggagcg gatgcctttt0 0 82.45 60.8421.61 Both
chr4 86 28530898 28530827 Glu CTC nnnnnnnnnn agtgctggtt0 0 71.82 45.4726.35 Both
chr4 87 28525106 28525035 Ala AGC gggtcgtcaa ggttccgttt0 0 75.28 49.7525.53 Both
chr4 88 28511345 28511273 Phe GAA gctcaaagca ggtttgtttt0 0 82.45 60.8421.61 Both
chr4 89 28510399 28510328 Ala TGC ttttcaggaa aacgttggtt0 0 72.54 54.8117.73 Both
chr4 92 28474641 28474569 Arg CCG acctgcgtgc tgtccttact0 0 69.88 52.7917.09 Both
chr4 94 28426761 28426690 Ala CGC tcaagggtcg ctcttcattt0 0 64.40 42.9221.48 Eufind
chr4 95 28414499 28414428 Ala CGC acttgcgcca aggcgattat0 0 74.81 51.2323.58 Both
chr4 96 28399279 28399208 Ala AGC ttttcaaggt gtcttttgta0 0 75.78 57.5918.19 Both
chr4 97 28368494 28368423 Ala TGC tcaggattcg cccactttag0 0 73.35 58.0915.26 Both
chr4 98 28338262 28338181 Ser GCT cttaacatgt tttcgtgagg0 0 85.34 57.7727.57 Both
chr4 99 28284014 28283942 Arg TCG gaagtcgtag gtgctccctt0 0 69.08 49.2019.88 Both
chr4 100 28233337 28233264 Thr CGT gcttccgcgt gatgtttttc0 0 78.43 59.9718.46 Both
chr4 101 28217983 28217902 Leu AAG atacaggtgt aacttattgc0 0 69.84 50.1619.68 Both
chr4 102 28213859 28213786 Thr TGT tacacctgtg taaagttttg0 0 84.08 63.3820.70 Both
chr4 103 27678579 27678509 Gly GCC tgtacagcaa gcggtgacgt0 0 81.62 61.5720.05 Both
chr4 104 27678159 27678088 Met CAT tttcgcgtgt gccttttttt0 0 68.98 40.9628.02 Both
chr4 105 27572852 27572781 Gln TTG gttcatgtgg tcttaactgt0 0 68.31 52.3116.00 Both
chr4 106 27568323 27568252 Gln CTG atagcagatt agcattggat0 0 66.59 50.5916.00 Both
chr4 107 27532587 27532515 Val AAC ttcgcagtaa cgaactggta0 0 86.79 61.6025.19 Both
chr4 108 27499055 27498982 Val CAC cttaataggg ttatcctgta0 0 67.05 45.8621.19 Both
chr4 109 27491323 27491241 Leu TAA agccccagtc ggttaagttt0 0 79.48 51.7627.72 Both
chr4 110 27437602 27437521 Ser CGA ggttcccgag ttgctgtttt0 0 88.07 58.8929.18 Both
chr4 111 27435867 27435795 Arg ACG ttacgggcac cttgtgctca0 0 58.18 47.6310.55 Both
chr4 112 27421523 27421451 Val AAC cggcagggtt agtggtcccc0 0 86.73 61.6125.12 Both
chr4 113 27365528 27365457 Met CAT aaggcacgac actccctgtt0 0 68.98 40.9628.02 Both
chr4 114 27364506 27364434 Lys TTT gcaatggaga aaacttacca0 0 70.30 58.9611.34 Both
chr4 115 27348042 27347971 Asp GTC cttcaaggct acaaatggat0 0 72.92 48.3824.54 Both
chr4 116 27314338 27314257 Ser AGA tgccatgtct tttgaaattt0 0 88.01 56.9031.11 Both
chr4 117 27308821 27308750 Gln CTG taccaagagg actcaaggat0 0 52.90 36.8116.09 Both
chr4 118 27302911 27302830 Ser AGA cgttctttat ataacgtttc0 0 88.50 57.3931.11 Both
chr4 119 27268176 27268095 Ser TGA atacggctgt gttttagcct0 0 87.56 59.2228.34 Both
chr4 120 27096404 27096332 Lys TTT ttgctaggga ctaacggagg0 0 81.41 62.4318.98 Both
chr4 121 27094395 27094324 Met CAT taatccggtc cgagttttag0 0 67.09 39.0828.01 Both
chr4 123 27033855 27033782 Ile AAT tattaccgag gatgttttcc0 0 70.71 61.299.42 Eufind
chr4 125 26988654 26988582 Val AAC caccaagtaa gtgtgcagtt0 0 67.33 44.4522.88 tRNAscan
chr4 126 26971837 26971765 Arg ACG atctgtcgac gaaactgctt0 0 65.99 49.0916.90 Both
chr4 127 26963662 26963590 Val CAC cgtagaggct ttcttcgctc0 0 82.69 61.4221.27 Both
chr4 128 26939429 26939356 Ile AAT acgtcaaggc cttagttgtt0 0 78.21 59.7218.49 Both
chr4 129 26795443 26795371 Met CAT ataaacggga ttgttttagt0 0 75.06 52.4922.57 Both
chr4 130 26612458 26612386 Ala AGC ttttccacga gttttatgta0 0 56.31 36.6819.63 Both
chr4 131 26566892 26566819 Thr AGT caagcatggt gtcgtagttt0 0 83.05 63.4919.56 Both
chr4 132 26314111 26314040 Trp CCA gtccctcgta acggttttta0 0 74.81 54.9419.87 Both
chr4 133 26312967 26312896 Met CAT ctgtcagtgt atctggattt0 0 68.98 40.9628.02 Both
chr4 134 26302150 26302079 Trp CCA ctactccagt ggggtggttg0 0 74.00 52.2121.79 Both
chr4 135 26297493 26297422 Met CAT ctgttgtgac tgtggcgttg0 0 68.98 40.9628.02 Both
chr4 136 26296977 26296896 Ser TGA aaggaggcac gtgtgtgttt0 0 88.25 57.1431.11 Both
chr4 137 26296116 26296045 Gln TTG ttgtggtgtt ctaacacttt0 0 68.31 52.3116.00 Both
chr4 138 26295561 26295490 Gln TTG aatggaaggt attctaattt0 0 64.01 51.0013.01 Both
chr4 139 26289523 26289442 Ser GCT tagggtctgt ctctggtttc0 0 82.07 55.0826.99 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr5 5 95926062 95926134 Met CAT atatctagtt acgcacccgt0 0 76.58 56.4420.14 Both
chr5 8 21808724 21808652 Val TAC gtgcacatcg gaaatctaca0 0 66.24 46.2420.00 Both
 
chr6 3 177767116 177767188 Val CAC acccgagcag atttcttcta0 0 81.44 62.0319.41 Both
chr6 4 177772796 177772877 Leu AAG ctagaacgga gtttgttgtg0 0 70.30 48.9221.38 Both
chr6 5 177854186 177854258 Val CAC agccaagcag tttccttcta0 0 85.50 61.7823.72 Both
chr6 6 177872180 177872261 Leu AAG gtagccgaga gactgtggta0 0 72.29 52.0620.23 Both
chr6 7 177891163 177891234 Ala TGC aagcgcggac gtgttctttt0 0 70.20 52.3017.90 Both
chr6 8 177891989 177892061 Lys CTT gttaccggac tagttggtcg0 0 80.47 57.8122.66 Both
chr6 9 177906793 177906721 Val CAC agctcaggca cgtttttttg0 0 87.39 62.2025.19 Both
chr6 10 177906372 177906300 Lys CTT tagccaagct gagttccttt0 0 80.47 57.8122.66 Both
chr6 12 177876119 177876047 Thr TGT actcgcagct gtttgtattt0 0 79.46 56.9222.54 Both
chr6 13 177873382 177873311 Pro TGG gttaacagcc agtttttgtt0 0 76.15 54.0922.06 Both
chr6 14 177872952 177872880 Val AAC tgaagtgtgg accccaagtg0 0 85.07 59.8825.19 Both
chr6 15 177854680 177854599 Leu AAG ccagggggaa gcttggcgtg0 0 71.96 50.5821.38 Both
chr6 16 177773312 177773240 Val CAC aagcgagccg cttccttcta0 0 87.39 62.2025.19 Both
chr6 17 177767589 177767508 Leu AAG ccaggagaaa gcttgctgtg0 0 63.16 43.2419.92 Both
chr6 19 138808213 138808140 Asp GTC aagactgtcg gcagcagccc0 0 39.21 13.7325.48 Both
 
chr7 2 23551949 23552020 His GTG ccggtagctc ttgtggaaac0 0 64.63 37.1827.45 Both
chr7 3 57983048 57983120 Lys CTT tcctgcgact gtgttcattt0 0 80.72 58.2822.44 Both
chr7 4 58870314 58870385 Cys GCA agtaggtgaa tcccggatgt0 0 72.76 54.6518.11 Both
chr7 5 68964187 68964259 Arg TCG ggaaccaggt aatgatggtg0 0 76.93 58.3418.59 Both
chr7 6 83331814 83331895 Leu AAG tttaccggct tgtggtcttt0 0 69.84 50.1619.68 Both
chr7 7 83348306 83348387 Leu TAG cagctcgtcc gtggtatgtt0 0 68.82 48.3720.45 Both
chr7 8 83355989 83356060 Pro TGG ttccaattct ctttctgttt0 0 79.61 57.5522.06 Both
chr7 9 83418456 83418528 Thr TGT ttctccgtga ttcgagttta0 0 78.79 56.3622.43 Both
chr7 10 83420045 83420133 Tyr GTA tgtcgcactc gaggttgatg83420082 83420097 73.51 47.1026.41 Both
chr7 11 83420782 83420853 Pro TGG ctaacacggt tcaggtttac0 0 76.15 54.0922.06 Both
chr7 12 85749062 85749134 Arg ACG tttcgtctca gtggggctgt0 0 72.37 52.4919.88 Both
chr7 13 97651821 97651892 Asp GTC acccaagtcg gtaggagtcc0 0 72.92 48.3824.54 Both
chr7 14 136058079 136058150 Cys GCA agcaggtgaa tcccggatgt0 0 74.26 55.0219.24 Both
chr7 15 152189982 152190054 Ala AGC aatgtcatct aactttacca0 0 66.36 41.8724.49 Both
chr7 16 165600491 165600564 Ile AAT agcatcagtt gtgtcgcttt0 0 80.66 62.1718.49 Both
chr7 18 121253960 121253888 Lys CTT tgtgacaggc cggcttgaaa0 0 80.72 58.2822.44 Both
chr7 19 110831998 110831927 Asn GTT tggggtccct acagatattg0 0 55.98 49.596.39 Eufind
chr7 21 83400655 83400566 Tyr GTA gagcgtgcac ggtgcctgat83400618 83400602 74.83 48.4226.41 Both
chr7 22 83397432 83397339 Tyr GTA cagcgtgcac agtgcttgac83397395 83397375 71.96 48.5423.42 Both
chr7 23 83394932 83394840 Tyr GTA cagcacgcac agtgcctgac83394895 83394876 75.22 48.8126.41 Both
chr7 24 83391551 83391458 Tyr GTA aggtgtgcgc agtactttat83391514 83391494 74.08 47.6726.41 Both
chr7 25 83354222 83354150 Thr TGT tgtgcgttgt tagcgatagg0 0 75.16 55.6019.56 Both
chr7 27 83335885 83335813 Thr TGT tccacgcgag gtgtgttttt0 0 79.22 56.6822.54 Both
chr7 28 83335490 83335419 Pro AGG tttatgtcgt tcgctttttc0 0 75.92 53.8522.07 Both
chr7 29 83331115 83331044 Pro AGG ttttacaggt tctgttcttt0 0 75.92 53.8522.07 Both
chr7 30 55370555 55370482 Lys CTT gttcagaatt gttttacttt0 0 50.70 36.2814.42 Both
chr7 31 44371218 44371147 Gln CTG tatgcgtggc gcattggtgc0 0 73.65 50.3623.29 Both
chr7 32 23551301 23551230 His GTG ccagtagctc ttgtgaggac0 0 64.63 37.1827.45 Both
chr7 33 23549540 23549469 His GTG ccggtagctc ttgtgggaac0 0 64.63 37.1827.45 Both
chr7 35 18958849 18958768 Ser GCT atgcttcggg aagtaacggc0 0 85.34 57.7727.57 Both
chr7 36 4992586 4992515 Glu TTC tctcgtcatc tgcggatttt0 0 76.26 53.7222.54 Both
 
chr8 1 10644460 10644531 Cys GCA agtcagcaga caatttcctt0 0 60.48 38.4322.05 Eufind
chr8 3 68748158 68748250 Tyr GTA cacacacgtc gacgagtgcg68748195 68748214 73.04 46.6326.41 Both
chr8 4 68748778 68748866 Tyr GTA ttgcccgctc gagactcatc68748815 68748830 70.33 43.9226.41 Both
chr8 5 68748970 68749042 Ala AGC gcccagccgt gttttctttc0 0 63.68 41.0222.66 Both
chr8 9 125738471 125738399 Met CAT cttgctaggt caatactttt0 0 79.85 59.4920.36 Both
chr8 12 97842144 97842063 Ser AGA tataccgcca ggattaatag0 0 88.01 56.9031.11 Both
chr8 14 39453441 39453360 Ser TGA atataggcgg gttttggccg0 0 87.32 56.2131.11 Both
 
chr9 2 94025808 94025878 Gly GCC gcctatgtac agagccttat0 0 81.62 61.5720.05 Both
chr9 3 69501739 69501658 Ser TGA tctcctcgtg gaagcaggtg0 0 90.86 62.3328.53 Both
chr9 6 22426242 22426169 Asn GTT cagcatggga caccctcgtt0 0 82.24 58.9723.27 Both
chr9 8 6127620 6127548 Val TAC catggcatgt tggtgaggtc0 0 53.39 46.337.06 Both
 
chr11 3 53249194 53249275 Ser CGA ggttttggaa gctttttttt0 0 89.14 63.5025.64 Both
chr11 5 97248393 97248464 Asp GTC tttgtgcagt gcatgagagt0 0 72.92 48.3824.54 Both
chr11 6 99687429 99687500 Asp GTC acacaaccac atacgacttt0 0 74.76 50.2124.55 Both
chr11 7 99688172 99688243 Trp CCA agcccagcag agtcgtgttt0 0 71.65 49.8521.80 Both
chr11 10 126250823 126250894 Ala TGC tgcgaggcga gggttttctt0 0 72.71 49.1223.59 Both
chr11 12 126250576 126250505 Asp GTC gtatggcttg gctaacagaa0 0 72.92 48.3824.54 Both
chr11 13 126240079 126240008 Ala TGC ggaaagggag ttacggtttt0 0 79.03 55.2923.74 Both
 
chr12 1 9816650 9816721 Asp GTC gcatggcttg gctaacagaa0 0 68.17 50.5017.67 Both
chr12 2 20009260 20009331 Ala CGC ctttcggctg aaacagccgg0 0 73.12 53.5119.61 Both
chr12 5 20009705 20009635 Gly GCC catgccagaa aggtcttttt0 0 81.62 61.5720.05 Both
 
chr13 1 27004347 27004436 Tyr GTA cacagcggag cttcgtgtac27004384 27004400 77.27 50.8726.40 Both
chr13 2 27004771 27004843 Ala AGC agcagcaggc cttcgcattt0 0 63.68 41.0222.66 Both
chr13 3 42929390 42929482 Ile TAT gctcagcgga tgaccctttt42929428 42929446 68.75 40.5528.20 Both
chr13 5 44392348 44392430 Leu TAG cgccaaagca aagctgaatt0 0 37.52 26.5710.95 Both
chr13 10 136730533 136730462 Glu TTC actcagtagt caacagtggt0 0 75.00 51.6923.31 Both
chr13 11 136726124 136726053 Glu TTC actcagtagt caacagtggt0 0 75.00 51.6923.31 Both
chr13 13 70528371 70528301 Gly CCC tataccaaca agcgactttt0 0 76.98 51.0525.93 Both
 
chr14 1 14306656 14306728 Phe GAA ttccaataca gggcttccgt0 0 84.19 62.5821.61 Both
chr14 2 14312369 14312441 Lys TTT tcttccgtga gctttaactt0 0 83.80 62.7821.02 Both
chr14 3 14315550 14315622 Phe GAA tcatgtcctt gagcttttgt0 0 84.19 62.5821.61 Both
chr14 4 14320968 14321040 Val TAC ccctgcacgc cgacatggtc0 0 80.95 55.9125.04 Both
chr14 5 14321332 14321404 Val TAC gttcttgtga agggttatta0 0 85.12 60.0825.04 Both
chr14 6 38028484 38028556 Val TAC tacaagattc tggttgcaaa0 0 83.40 58.3725.03 Both
chr14 8 74412262 74412333 Pro AGG tacgagccgt tnnnnnnnnn0 0 75.92 53.8522.07 Both
chr14 17 14320729 14320644 Arg TCT gtacgtgtct ctttttgttt14320692 14320680 71.13 50.6820.45 Both
chr14 18 14320268 14320186 Leu TAA ttcgtcaatt aaggttagtt0 0 79.52 46.1333.39 Both
chr14 19 14316690 14316618 Lys TTT ttctttaggg gatgctattt0 0 79.89 58.8821.01 Both
chr14 20 8103504 8103423 Ser GCT tgttacatag gccgtctttt0 0 85.83 58.2527.58 Both
 
chr15 3 62474555 62474626 His GTG tcagtagctt ggaggggaga0 0 64.63 37.1827.45 Both
chr15 4 83677101 83677030 Asp GTC tttggggggg gctaattatg0 0 59.75 41.3118.44 Both
 
chr16 1 7882369 7882441 Lys TTT tatgctaaga gattgtttta0 0 83.80 62.7821.02 Both
chr16 2 7882959 7883030 Gln CTG gtaagagggt taactttttt0 0 73.65 50.3623.29 Both
chr16 3 7884087 7884175 Arg TCT cccgcgaggt attttatttc7884124 7884139 71.40 50.9520.45 Both
chr16 4 7888869 7888939 Gly GCC cagtagtcac agagccttat0 0 81.62 61.5720.05 Both
chr16 5 7948014 7948085 Trp CCA atggccggcc gcgaatgctt0 0 74.00 52.2121.79 Both
chr16 6 7948526 7948607 Ser GCT gctatccgga gctacggaag0 0 85.34 57.7727.57 Both
chr16 7 7948827 7948900 Thr AGT cccttccggc aagtgtttcc0 0 84.06 64.4519.61 Both
chr16 8 7949259 7949332 Ile AAT ctgagcagct tagttgaaac0 0 80.66 62.1718.49 Both
chr16 9 7970889 7970960 Gly TCC cagtacctaa agtgcatttt0 0 73.26 52.8320.43 Both
chr16 11 19386348 19386418 Gly CCC aagtttcaaa actcccacct0 0 64.90 53.8211.08 Both
chr16 12 26730088 26730159 Thr CGT tgggctgtca gaaacccgag0 0 79.77 59.8819.89 Both
chr16 13 33426496 33426567 Gln TTG gcagccagca cgccgtatct0 0 73.77 50.8322.94 Both
chr16 14 48908938 48909009 Cys GCA atccagcaga cgcgttgttt0 0 77.71 58.4719.24 Both
chr16 15 70301112 70301184 Arg CCT cgtgtcacaa aaagtggcaa0 0 73.88 56.3117.57 Both
chr16 16 70302311 70302383 Arg TCG catagaaggc gaatatttta0 0 70.52 51.5019.02 Both
chr16 17 77980509 77980438 Met CAT cttcacagtc tggacttgtt0 0 68.98 40.9628.02 Both
chr16 18 70301702 70301630 Arg CCT atcttaccgc ggactgtgct0 0 73.41 55.8417.57 Both
chr16 20 63359235 63359163 Arg CCG atcttgtggt cgtgtgatta0 0 65.49 49.2416.25 Both
chr16 23 49222950 49222879 Cys GCA gtggcgtggt ttgcgtacgt0 0 77.71 58.4719.24 Both
chr16 24 49222184 49222113 Cys GCA caccggcaga ctttgacctt0 0 77.71 58.4719.24 Both
chr16 25 48910643 48910572 Cys GCA gcagcggcgc cggtggtttt0 0 77.18 59.2617.92 Both
chr16 26 48900984 48900913 Cys GCA ttccaataga tgcagctagc0 0 68.22 48.9819.24 Both
chr16 27 48869094 48869023 Cys GCA aatgaacaga tccgtgatgt0 0 60.68 41.4419.24 Both
chr16 28 48778859 48778786 Asn GTT aatcgtcgcg cggtgggttt0 0 82.24 58.9723.27 Both
chr16 29 7975724 7975651 Ile AAT attaacaact gagggtggtt0 0 79.24 60.7518.49 Both
chr16 30 7975362 7975281 Ser AGA aagaggcctt tgagattttt0 0 88.01 56.9031.11 Both
chr16 31 7974985 7974912 Thr AGT gggcagcctt ttattcaatt0 0 82.32 62.7119.61 Both
chr16 32 7972227 7972156 Pro CGG ttcgtacgtc tcctttacgt0 0 76.52 54.4622.06 Both
chr16 33 7971632 7971561 Asp GTC gaccggtcac aatccaaatg0 0 61.45 42.3319.12 Both
chr16 34 7970296 7970225 Trp CCA ctgttgggca aaccaaacat0 0 74.81 54.9419.87 Both
chr16 35 7899577 7899504 Thr AGT gctttacccc gagttggtgg0 0 79.72 61.5818.14 Both
chr16 36 7899047 7898966 Ser CGA cccgcacgcg tcagtacttt0 0 92.09 62.9129.18 Both
chr16 37 7883570 7883489 Leu TAG ctttcacgca ggccggagtt0 0 72.19 50.8121.38 Both
 

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr17 2 74955649 74955577 Phe GAA ccagaagcgt gctactttta0 0 84.19 62.5821.61 Both
chr17 3 23827747 23827676 Glu TTC tatcgtcgtc cgccaagatt0 0 76.26 53.7222.54 Both
chr17 4 20079372 20079301 Glu TTC cagcagcact agctgctttt0 0 75.00 51.6923.31 Both
chr17 6 10111802 10111729 Asn GTT gagtaactgg gccagtgctt0 0 80.50 57.2323.27 Both
 
chr19 1 1150192 1150265 Asn GTT nnnnnnnnnn cgcgccaatt0 0 82.24 58.9723.27 Both
chr19 2 4612897 4612968 Gly TCC tgttaccgtg gaagaggatg0 0 76.83 56.4020.43 Both
chr19 3 11957913 11957986 Ala GGC gtcatttgag cattagttga0 0 46.34 29.2717.07 Both
chr19 4 39696061 39696134 Thr AGT ttgcacgggc caaccgagcg0 0 84.06 64.4519.61 Both
chr19 6 51918323 51918238 SeC(e) TCA ttattatttc gacagccacg0 0 75.99 0.000.00 Eufind
chr19 8 4613512 4613440 Val CAC acctttaccg gctctgctct0 0 62.45 44.7317.72 Both
 
chr20 1 3291264 3291336 Arg CCG gtagcggcag ttgcgaggtt0 0 69.88 52.7917.09 Both
chr20 2 3293341 3293413 Arg CCT gccaccgtcc aaaatgggat0 0 71.53 57.4814.05 Both
chr20 3 3299000 3299071 Pro TGG ttattgcgct tcttctattt0 0 76.15 54.0922.06 Both
chr20 4 3305212 3305284 Lys CTT catgatgtca cagcttttgc0 0 80.47 57.8122.66 Both
chr20 5 3312272 3312343 Pro CGG acacctggga caaaagtggt0 0 65.47 50.5514.92 Both
chr20 6 3321724 3321795 Pro TGG acaagccggc ctttttcctt0 0 59.12 49.139.99 Both
chr20 7 3323668 3323739 Pro AGG taagttgcgc ggcttttggt0 0 75.92 53.8522.07 Both
chr20 8 3325897 3325969 Lys CTT cggtaaggga acttgttttc0 0 80.47 57.8122.66 Both
chr20 10 3329852 3329924 Arg CCT tttgacagct agacaacacc0 0 73.88 56.3117.57 Both
chr20 12 14398040 14398111 Thr CGT tcgtaacgca ggtgtccagc0 0 80.42 57.5722.85 Both
chr20 13 16183638 16183709 Ala TGC cttgaggcaa gggttttggc0 0 71.24 47.7023.54 Both
chr20 14 20714096 20714177 Leu AAG tctacagctg gggttggttt0 0 69.84 50.1619.68 Both
chr20 15 28390630 28390723 Ile TAT accaccacgt tgttttcttc28390668 28390687 43.86 25.0118.85 Both
chr20 16 55659173 55659255 Leu CAG tttctgggaa agtgttattt0 0 75.90 46.8929.01 Both
chr20 17 69167605 69167677 Lys TTT taaggaggga tgtcctgtgg0 0 81.20 63.5517.65 Both
chr20 18 71857389 71857459 Gly GCC ctcagctgga gcagctgcaa0 0 81.62 61.5720.05 Both
chr20 19 71858204 71858274 Gly GCC gccagctgga gcctgtctac0 0 81.62 61.5720.05 Both
chr20 20 85504757 85504685 Met CAT cgattgagca gcccaacgtt0 0 74.51 54.1520.36 Both
chr20 21 71848117 71848047 Gly GCC aacagctgga atgcagtgtt0 0 81.62 61.5720.05 Both
chr20 22 71847406 71847336 Gly GCC taacatctgg acagcagagc0 0 61.01 51.029.99 Both
chr20 23 71235251 71235179 Met CAT tgcaaaggcc gctgttttgc0 0 78.21 55.6422.57 Both
chr20 24 55659691 55659609 Leu CAG acatcaagca gagcttcgta0 0 75.90 46.8929.01 Both
chr20 26 20606831 20606750 Leu TAG gctaacggga caccccggag0 0 68.14 45.5422.60 Both
chr20 27 10532817 10532747 Gly GCC aaaagaaggt gcacgccctc0 0 69.93 53.3516.58 Both
chr20 29 3315938 3315867 Pro AGG cagagtatgt aagttttggt0 0 75.92 53.8522.07 Both
chr20 30 3313838 3313766 Lys CTT ctataaggaa tatgttttga0 0 80.47 57.8122.66 Both
chr20 31 3297683 3297611 Lys CTT tcttgtaacc agaggttttg0 0 80.47 57.8122.66 Both
chr20 33 625221 625151 Gly CCC atagcagacg gcttctttac0 0 76.98 51.0525.93 Both
 
chrX 3 90049775 90049842 Val CAC gcgtcgattt cttcctacag0 0 55.93 39.4816.45 Eufind
chrX 5 16425927 16425855 Val TAC ttctcgtagc tggtcgcgag0 0 74.27 53.7420.53 Both
chrX 6 1515399 1515326 Ile GAT ggcgtcaggt taattttagc0 0 67.40 48.7018.70 Both
chrX 7 1515000 1514927 Ile GAT ggcgtcagga tggtcttacg0 0 67.40 48.7018.70 Both
chrX 8 1514593 1514520 Ile GAT gacgtcagga tagtcttatc0 0 71.70 50.0121.69 Both
chrX 9 1509181 1509108 Ile GAT ctggtcaggt tagtctcagg0 0 59.98 45.8014.18 Eufind


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.