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Sequence Name | tRNA # | tRNA Bounds | tRNA Isotype | Anticodon | Upstream Region | Downstream Region | Intron Bounds | Scores | First-Pass Scanner |
| Begin | End | Begin | End | Total (Cove) | HMM | 2' Str |
| chr1 | 2 | 19488468 | 19488538 | Gly | CCC | ccaaagaggg | agagctgttg | 0 | 0 | 78.80 | 59.10 | 19.70 | Both |
| chr1 | 3 | 19526041 | 19526114 | Asn | GTT | gggaacggtt | attcttggaa | 0 | 0 | 82.24 | 58.97 | 23.27 | Both |
| chr1 | 5 | 49217887 | 49217959 | Met | CAT | agatacgtct | gctggtattt | 0 | 0 | 62.16 | 44.88 | 17.28 | tRNAscan |
| chr1 | 6 | 96873399 | 96873483 | Arg | TCT | tccaacaggt | taacgctttt | 96873436 | 96873447 | 71.18 | 52.88 | 18.30 | Both |
| chr1 | 8 | 126242760 | 126242831 | Glu | CTC | cttaacagct | gaaacgattt | 0 | 0 | 76.61 | 53.94 | 22.67 | Both |
| chr1 | 9 | 126244138 | 126244209 | Gly | TCC | cgtttcagaa | ggtttggtct | 0 | 0 | 73.26 | 52.83 | 20.43 | Both |
| chr1 | 10 | 126245071 | 126245142 | His | GTG | ctggtggctc | cgttactcct | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr1 | 11 | 126246128 | 126246200 | Lys | CTT | gctaacggtt | ctgcgatttt | 0 | 0 | 80.47 | 57.81 | 22.66 | Both |
| chr1 | 12 | 126299939 | 126300012 | Asn | GTT | cacagtacct | cttggtgaat | 0 | 0 | 85.28 | 62.01 | 23.27 | Both |
| chr1 | 14 | 126472180 | 126472251 | His | GTG | cctgtggctc | aagttgttcg | 0 | 0 | 58.31 | 30.86 | 27.45 | Both |
| chr1 | 15 | 127429049 | 127429120 | Gln | CTG | tgtattgtgt | tactgcttag | 0 | 0 | 71.61 | 48.32 | 23.29 | Both |
| chr1 | 18 | 127747657 | 127747730 | Asn | GTT | acccattaga | ggcagctttt | 0 | 0 | 56.32 | 46.10 | 10.22 | Both |
| chr1 | 19 | 127860417 | 127860488 | Gln | CTG | tgcaccgtga | ttctgtttaa | 0 | 0 | 70.16 | 46.87 | 23.29 | Both |
| chr1 | 20 | 132182618 | 132182689 | Met | CAT | gccttcagat | tcggaatttt | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr1 | 22 | 140040022 | 140040104 | Leu | CAG | ccggcgcgcc | acccgacctt | 0 | 0 | 77.22 | 46.89 | 30.33 | Both |
| chr1 | 23 | 140041776 | 140041846 | Gly | GCC | taccatcggt | gcacgccctc | 0 | 0 | 82.15 | 62.58 | 19.57 | Both |
| chr1 | 24 | 140101782 | 140101853 | Gly | TCC | atgcttagcg | gatttttttg | 0 | 0 | 73.26 | 52.83 | 20.43 | Both |
| chr1 | 25 | 140102746 | 140102817 | Asp | GTC | tccgaagtcg | atgacgggtt | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr1 | 26 | 140111150 | 140111223 | Asn | GTT | ttcaacgtcc | gaagtgcagt | 0 | 0 | 83.66 | 60.39 | 23.27 | Both |
| chr1 | 28 | 165925556 | 165925628 | Lys | TTT | tgatacggga | tggtgttttc | 0 | 0 | 83.80 | 62.78 | 21.02 | Both |
| chr1 | 31 | 197453474 | 197453545 | Pro | CGG | tgccgagagc | aggcttttac | 0 | 0 | 76.52 | 54.46 | 22.06 | Both |
| chr1 | 33 | 207817895 | 207817789 | Leu | CAA | acttccgagt | cattcgtttt | 207817857 | 207817835 | 65.96 | 45.55 | 20.41 | Both |
| chr1 | 34 | 207817508 | 207817437 | Glu | CTC | tgccatggcg | aggagctttt | 0 | 0 | 76.61 | 53.94 | 22.67 | Both |
| chr1 | 36 | 197454148 | 197454077 | Pro | AGG | gaagcatgtc | tcttttacgt | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr1 | 38 | 174099780 | 174099708 | Lys | TTT | agtaaaagaa | taacttgtgg | 0 | 0 | 83.80 | 62.78 | 21.02 | Both |
| chr1 | 39 | 165926125 | 165926053 | Lys | TTT | ctgccgaagc | tttgtagttt | 0 | 0 | 83.80 | 62.78 | 21.02 | Both |
| chr1 | 41 | 147763700 | 147763628 | Thr | TGT | gtttcacgtg | cctgtcggct | 0 | 0 | 83.03 | 60.49 | 22.54 | Both |
| chr1 | 42 | 140101083 | 140101001 | Leu | CAG | tctaacgggt | atgcatattt | 0 | 0 | 75.90 | 46.89 | 29.01 | Both |
| chr1 | 43 | 140094738 | 140094668 | Gly | GCC | ttctgtagta | cgctttattt | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| chr1 | 44 | 140039417 | 140039346 | Asp | GTC | gtggccgtcg | gcagcagtcc | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr1 | 45 | 140038723 | 140038652 | Gly | TCC | gcgccgtgcg | gcgggccgac | 0 | 0 | 73.26 | 52.83 | 20.43 | Both |
| chr1 | 46 | 140038364 | 140038293 | Glu | CTC | aggccgtctc | gccttccttc | 0 | 0 | 76.61 | 53.94 | 22.67 | Both |
| chr1 | 47 | 140026886 | 140026813 | Asn | GTT | actcaggtca | gttagcactt | 0 | 0 | 80.50 | 57.23 | 23.27 | Both |
| chr1 | 48 | 140005223 | 140005151 | Val | CAC | ctgtcactta | aagtgtggtg | 0 | 0 | 87.39 | 62.20 | 25.19 | Both |
| chr1 | 49 | 137735757 | 137735684 | Arg | TCT | gtgtggtgag | gtcacctggc | 0 | 0 | 76.29 | 56.97 | 19.32 | Both |
| chr1 | 50 | 128403129 | 128403058 | Ala | AGC | aagaattaaa | caaaggtttt | 0 | 0 | 67.52 | 46.42 | 21.10 | Both |
| chr1 | 52 | 128113414 | 128113341 | Asn | GTT | gcttagctgt | tctgtaccct | 0 | 0 | 72.91 | 53.42 | 19.49 | Both |
| chr1 | 53 | 128085320 | 128085248 | Val | CAC | caagtgtgtg | ggtctccttt | 0 | 0 | 87.39 | 62.20 | 25.19 | Both |
| chr1 | 54 | 128081397 | 128081327 | Gly | CCC | gtacaggaag | agaggttttt | 0 | 0 | 80.05 | 60.00 | 20.05 | Both |
| chr1 | 55 | 128073233 | 128073162 | Glu | TTC | ctcgtgtgtc | ttgttttgca | 0 | 0 | 69.44 | 47.03 | 22.41 | Both |
| chr1 | 56 | 128070415 | 128070343 | Asn | GTT | aatcgaggtt | tacttttaaa | 0 | 0 | 70.08 | 49.80 | 20.28 | Both |
| chr1 | 57 | 128029176 | 128029103 | Asn | GTT | agcagtccct | cttattgcaa | 0 | 0 | 82.24 | 58.97 | 23.27 | Both |
| chr1 | 59 | 127960449 | 127960378 | His | GTG | cctgtggctc | gcgtcgtttg | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr1 | 60 | 127949972 | 127949901 | Glu | TTC | tttttatgtc | ctgttttgca | 0 | 0 | 72.33 | 49.66 | 22.67 | Both |
| chr1 | 62 | 127887882 | 127887809 | Asn | GTT | gatagttctt | cttattgcaa | 0 | 0 | 80.07 | 58.81 | 21.26 | Both |
| chr1 | 63 | 127840348 | 127840277 | Glu | TTC | cctgtcttct | cacgttttgc | 0 | 0 | 67.70 | 45.30 | 22.40 | Both |
| chr1 | 64 | 127834211 | 127834140 | His | GTG | cctgtggctc | gcgttgtttg | 0 | 0 | 64.70 | 37.30 | 27.40 | Both |
| chr1 | 65 | 127757750 | 127757677 | Asn | GTT | agtagtgctt | cttagataga | 0 | 0 | 83.22 | 59.96 | 23.26 | Both |
| chr1 | 67 | 127661746 | 127661676 | Gly | CCC | gtagggagag | agcagcttgc | 0 | 0 | 69.82 | 51.12 | 18.70 | Both |
| chr1 | 68 | 127655909 | 127655838 | Glu | TTC | tttccctatc | ttgttttgca | 0 | 0 | 68.58 | 50.23 | 18.35 | Both |
| chr1 | 69 | 127653043 | 127652970 | Asn | ATT | aactgaggtt | tccttttaaa | 0 | 0 | 56.10 | 45.88 | 10.22 | Both |
| chr1 | 70 | 127525387 | 127525314 | Asn | GTT | gaaagcactt | cttactgcaa | 0 | 0 | 82.24 | 58.97 | 23.27 | Both |
| chr1 | 71 | 127405264 | 127405193 | Glu | TTC | tttgtcggct | cgtgttttgc | 0 | 0 | 60.65 | 42.30 | 18.35 | Both |
| chr1 | 72 | 127399377 | 127399306 | His | GTG | cctgtggctg | acgtcgttcg | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr1 | 74 | 57812122 | 57812050 | Lys | CTT | tggtgtaaaa | ccaaattttt | 0 | 0 | 66.88 | 45.20 | 21.68 | Both |
| chr1 | 76 | 19475317 | 19475247 | Gly | CCC | ccaaagaggg | agagtctttt | 0 | 0 | 78.80 | 59.10 | 19.70 | Both |
| chr1 | 78 | 19465077 | 19465004 | Asn | GTT | aaatgaggtt | tgattttaaa | 0 | 0 | 70.74 | 47.48 | 23.26 | Both |
| chr1 | 79 | 19449600 | 19449527 | Asn | GTT | gggagcggtt | actcttggaa | 0 | 0 | 82.24 | 58.97 | 23.27 | Both |
| |
| chr2 | 3 | 90844391 | 90844463 | Arg | ACG | taccagcttg | cagtgctcgt | 0 | 0 | 68.07 | 51.18 | 16.89 | Both |
| chr2 | 4 | 102003563 | 102003633 | Asp | GTC | ggataggcgg | gctgttgatg | 0 | 0 | 55.81 | 37.70 | 18.11 | Eufind |
| chr2 | 6 | 155445173 | 155445244 | Cys | GCA | ttactggtgt | gtgcatttgt | 0 | 0 | 74.20 | 55.02 | 19.18 | Both |
| chr2 | 7 | 155447868 | 155447939 | Cys | GCA | ttggtgtcaa | atggcatact | 0 | 0 | 75.06 | 57.34 | 17.72 | Both |
| chr2 | 10 | 117245441 | 117245369 | Val | AAC | gtggagcggg | gcccgacaga | 0 | 0 | 86.79 | 61.60 | 25.19 | Both |
| chr2 | 12 | 85825320 | 85825249 | Ala | AGC | aaaaaaaaat | gtctggccgg | 0 | 0 | 69.88 | 54.86 | 15.02 | Eufind |
| chr2 | 13 | 73813613 | 73813542 | Glu | TTC | tgactgtccc | gtctgctttt | 0 | 0 | 65.45 | 48.39 | 17.06 | Both |
| |
| chr3 | 1 | 46677328 | 46677399 | Trp | CCA | attcttccaa | aacatatgat | 0 | 0 | 74.00 | 52.21 | 21.79 | Both |
| chr3 | 2 | 46678585 | 46678656 | Trp | CCA | atgtttccaa | cagctgtcgc | 0 | 0 | 62.19 | 44.34 | 17.85 | Both |
| chr3 | 3 | 166112491 | 166112562 | Pro | AGG | aattgcctgt | tgctttttct | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr3 | 5 | 176836850 | 176836922 | Arg | CCT | actcacagaa | gcctgagatt | 0 | 0 | 67.28 | 54.18 | 13.10 | Both |
| chr3 | 6 | 186633850 | 186633921 | Cys | GCA | aatggcgaca | agttttcttc | 0 | 0 | 77.65 | 58.48 | 19.17 | Both |
| chr3 | 7 | 186653459 | 186653530 | Cys | GCA | agtcaggcct | cctgttttgt | 0 | 0 | 74.20 | 55.02 | 19.18 | Both |
| chr3 | 8 | 186860653 | 186860724 | Cys | GCA | tagaagctga | ggaaagagtc | 0 | 0 | 66.30 | 48.11 | 18.19 | Both |
| chr3 | 9 | 186868952 | 186869023 | Cys | GCA | atgacaagta | actgcacttt | 0 | 0 | 71.19 | 49.16 | 22.03 | Both |
| chr3 | 12 | 186889972 | 186890043 | Cys | GCA | gtctacgact | acaccattct | 0 | 0 | 67.09 | 53.47 | 13.62 | Both |
| chr3 | 14 | 186925708 | 186925779 | Cys | GCA | ccccaggcct | accctgtttt | 0 | 0 | 73.11 | 53.94 | 19.17 | Both |
| chr3 | 15 | 186956639 | 186956710 | Cys | GCA | caccaggcaa | actgccattt | 0 | 0 | 74.26 | 55.02 | 19.24 | Both |
| chr3 | 16 | 187007484 | 187007555 | Cys | GCA | acttctgcca | gctgtcttct | 0 | 0 | 74.20 | 55.02 | 19.18 | Both |
| chr3 | 17 | 186991778 | 186991707 | Cys | GCA | tgtgggccgt | actggttttc | 0 | 0 | 73.73 | 55.81 | 17.92 | Both |
| chr3 | 18 | 186938363 | 186938291 | Cys | GCA | ataaccaggt | ctctatttca | 0 | 0 | 69.87 | 50.69 | 19.18 | Both |
| chr3 | 19 | 186893958 | 186893887 | Cys | GCA | gcaattaaat | ccctattttc | 0 | 0 | 75.20 | 56.02 | 19.18 | Both |
| chr3 | 20 | 186731903 | 186731832 | Cys | GCA | tcttgctgga | gcgcgcagtg | 0 | 0 | 75.26 | 56.02 | 19.24 | Both |
| chr3 | 22 | 186691676 | 186691605 | Cys | GCA | tgagtacctc | ttgttattac | 0 | 0 | 74.20 | 55.02 | 19.18 | Both |
| chr3 | 23 | 186689943 | 186689872 | Cys | GCA | tgagtacctt | ttgtcactac | 0 | 0 | 74.20 | 55.02 | 19.18 | Both |
| chr3 | 25 | 186672372 | 186672301 | Cys | GCA | tagcaaaact | agtattttaa | 0 | 0 | 71.19 | 49.16 | 22.03 | Both |
| |
| chr4 | 1 | 18880794 | 18880865 | Gln | CTG | caggaaggag | ttcatattgg | 0 | 0 | 57.24 | 40.32 | 16.92 | Both |
| chr4 | 2 | 26274054 | 26274125 | Met | CAT | gtgatggagg | gacatttttt | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr4 | 3 | 26283822 | 26283894 | Arg | TCG | actcggaaag | aacggggtgc | 0 | 0 | 69.55 | 49.67 | 19.88 | Both |
| chr4 | 4 | 26305419 | 26305491 | Arg | TCG | tctagcccga | tttgggggcc | 0 | 0 | 72.33 | 51.13 | 21.20 | Both |
| chr4 | 5 | 26310192 | 26310273 | Ser | AGA | tttctcactg | gaagtggact | 0 | 0 | 88.01 | 56.90 | 31.11 | Both |
| chr4 | 6 | 26310736 | 26310808 | Arg | ACG | gctcgtggga | ttgggttttt | 0 | 0 | 72.37 | 52.49 | 19.88 | Both |
| chr4 | 7 | 26554816 | 26554898 | Leu | CAG | cgacacggca | ggtgctagtt | 0 | 0 | 77.22 | 46.89 | 30.33 | Both |
| chr4 | 8 | 26571735 | 26571807 | Arg | ACG | ccaatatgtg | gtatatgtgc | 0 | 0 | 72.37 | 52.49 | 19.88 | Both |
| chr4 | 9 | 26572298 | 26572370 | Val | CAC | cccaccgtga | gctttttttt | 0 | 0 | 87.39 | 62.20 | 25.19 | Both |
| chr4 | 10 | 26587158 | 26587229 | Ala | CGC | ttgcaaggat | agtccttttt | 0 | 0 | 74.81 | 51.23 | 23.58 | Both |
| chr4 | 11 | 26587778 | 26587851 | Ile | AAT | agatgtaggt | cgtttctttt | 0 | 0 | 80.66 | 62.17 | 18.49 | Both |
| chr4 | 12 | 26588905 | 26588976 | Pro | AGG | atgatcaggc | acgttttgtt | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr4 | 13 | 26590649 | 26590721 | Lys | CTT | cctttcacaa | ctttgtctta | 0 | 0 | 70.76 | 57.41 | 13.35 | Eufind |
| chr4 | 14 | 26609410 | 26609500 | Tyr | GTA | ttatgtgaat | gttcatgttt | 26609447 | 26609464 | 78.22 | 51.81 | 26.41 | Both |
| chr4 | 16 | 26617748 | 26617837 | Tyr | GTA | aacttcgtgt | cggtagtttt | 26617785 | 26617801 | 79.64 | 53.24 | 26.40 | Both |
| chr4 | 17 | 26628674 | 26628762 | Tyr | GTA | gcaacaacat | gttccctttt | 26628711 | 26628726 | 71.82 | 47.12 | 24.70 | Both |
| chr4 | 18 | 26704752 | 26704824 | Ala | AGC | cccctgatgt | agctttatta | 0 | 0 | 62.45 | 37.80 | 24.65 | Both |
| chr4 | 19 | 26714337 | 26714409 | Ala | AGC | cccctgatgt | agctttatta | 0 | 0 | 62.45 | 37.80 | 24.65 | Both |
| chr4 | 20 | 26824558 | 26824651 | Ile | TAT | ggggctgtgt | ttgttttcca | 26824596 | 26824615 | 67.72 | 39.53 | 28.19 | Both |
| chr4 | 21 | 26860286 | 26860357 | Pro | CGG | acttctaagt | acttcatttt | 0 | 0 | 76.52 | 54.46 | 22.06 | Both |
| chr4 | 22 | 26869893 | 26869974 | Ser | GCT | agtgtatcga | ggtgaggtct | 0 | 0 | 88.12 | 59.22 | 28.90 | Both |
| chr4 | 23 | 26916601 | 26916673 | Val | CAC | catggaacga | catttaccag | 0 | 0 | 56.70 | 45.16 | 11.54 | Both |
| chr4 | 24 | 26924010 | 26924081 | His | GTG | ctggtggcgt | gtaccttgac | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr4 | 25 | 26928192 | 26928265 | Thr | AGT | gcccaagagg | tagttgttca | 0 | 0 | 80.30 | 60.85 | 19.45 | Both |
| chr4 | 26 | 26968364 | 26968445 | Ser | CGA | cccttagagg | cttctgttgt | 0 | 0 | 85.83 | 56.69 | 29.14 | Both |
| chr4 | 27 | 26973193 | 26973265 | Arg | ACG | acgcaaccgc | agcgctaatt | 0 | 0 | 72.37 | 52.49 | 19.88 | Both |
| chr4 | 28 | 26993094 | 26993176 | Leu | TAA | atggcttatc | ggtgttggtg | 0 | 0 | 79.31 | 47.67 | 31.64 | Both |
| chr4 | 29 | 27032538 | 27032611 | Ile | AAT | tttggctgtt | catgttttcc | 0 | 0 | 56.82 | 50.33 | 6.49 | Eufind |
| chr4 | 30 | 27049921 | 27049993 | Val | TAC | gtgcacatcg | gcttgtaatt | 0 | 0 | 77.74 | 51.18 | 26.56 | Both |
| chr4 | 31 | 27053182 | 27053255 | Ile | AAT | aatcgggagc | ctcgctttct | 0 | 0 | 78.92 | 60.44 | 18.48 | Both |
| chr4 | 32 | 27054725 | 27054796 | Gln | CTG | cgcagatgta | tagtattttg | 0 | 0 | 63.78 | 46.73 | 17.05 | Both |
| chr4 | 33 | 27057009 | 27057090 | Ser | GCT | cggcccgaag | actcttttct | 0 | 0 | 86.80 | 59.22 | 27.58 | Both |
| chr4 | 34 | 27239596 | 27239677 | Ser | AGA | ctccattcgt | gatgttttac | 0 | 0 | 88.01 | 56.90 | 31.11 | Both |
| chr4 | 35 | 27240310 | 27240381 | Asp | GTC | tcacgtcagt | gagacttcag | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr4 | 36 | 27258355 | 27258436 | Ser | AGA | ttatacagct | gaatgttttt | 0 | 0 | 88.01 | 56.90 | 31.11 | Both |
| chr4 | 37 | 27265311 | 27265392 | Ser | AGA | gtgaggccgt | agctaacaag | 0 | 0 | 70.66 | 52.00 | 18.66 | Eufind |
| chr4 | 38 | 27265995 | 27266066 | Asp | GTC | tctcaggtct | aaaagtagct | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr4 | 39 | 27282126 | 27282197 | Gln | CTG | gctgtagtga | gaggtttttg | 0 | 0 | 73.65 | 50.36 | 23.29 | Both |
| chr4 | 40 | 27293421 | 27293502 | Ser | AGA | gatccttcac | gtccgttcct | 0 | 0 | 88.50 | 57.39 | 31.11 | Both |
| chr4 | 41 | 27306734 | 27306815 | Ser | TGA | atacaggcgg | gttttaccag | 0 | 0 | 88.73 | 57.62 | 31.11 | Both |
| chr4 | 42 | 27324652 | 27324738 | Arg | TCT | cgcgcaagca | gatcttgcgt | 27324689 | 27324702 | 69.29 | 50.21 | 19.08 | Both |
| chr4 | 43 | 27341540 | 27341612 | Lys | TTT | ttgcacgagg | ttaagcatag | 0 | 0 | 81.41 | 62.43 | 18.98 | Both |
| chr4 | 44 | 27388146 | 27388218 | Thr | CGT | cttttaacgt | gtgcagacta | 0 | 0 | 46.45 | 27.99 | 18.46 | Both |
| chr4 | 45 | 27401464 | 27401557 | Ile | TAT | aagaaagcat | tgttttcttc | 27401502 | 27401521 | 68.23 | 40.03 | 28.20 | Both |
| chr4 | 46 | 27433833 | 27433906 | Ile | AAT | atatctgcgt | ctggattatc | 0 | 0 | 80.66 | 62.17 | 18.49 | Both |
| chr4 | 47 | 27446102 | 27446174 | Val | AAC | ctaacgccgg | cgtggactgg | 0 | 0 | 87.28 | 62.44 | 24.84 | Both |
| chr4 | 48 | 27450829 | 27450902 | Ile | AAT | cctgtcatct | attattcact | 0 | 0 | 80.66 | 62.17 | 18.49 | Both |
| chr4 | 49 | 27497117 | 27497190 | Thr | AGT | atacaggtga | cttatttctt | 0 | 0 | 79.86 | 59.23 | 20.63 | Both |
| chr4 | 50 | 27554907 | 27554978 | Met | CAT | acatttcacc | aggtggtggc | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr4 | 51 | 27917335 | 27917416 | Ser | GCT | ttcttcgtgc | gctgctttac | 0 | 0 | 85.34 | 57.77 | 27.57 | Both |
| chr4 | 52 | 28278404 | 28278497 | Ile | TAT | tatctccgtg | gttttactat | 28278442 | 28278461 | 65.72 | 37.52 | 28.20 | Both |
| chr4 | 53 | 28330530 | 28330601 | Gln | TTG | tcttgtggtt | ttcaaaggtg | 0 | 0 | 71.88 | 48.94 | 22.94 | Both |
| chr4 | 54 | 28347353 | 28347424 | Ala | AGC | gcctacggtt | ccagttttgg | 0 | 0 | 76.69 | 53.05 | 23.64 | Both |
| chr4 | 55 | 28379727 | 28379798 | Ala | TGC | tattcttgct | ctaggtgcag | 0 | 0 | 76.14 | 57.10 | 19.04 | Both |
| chr4 | 56 | 28443045 | 28443116 | Ala | AGC | acagcttttg | tgtatttggc | 0 | 0 | 71.93 | 51.08 | 20.85 | Both |
| chr4 | 57 | 28450540 | 28450611 | Ala | AGC | gtcccggaga | cttggtggtg | 0 | 0 | 77.18 | 53.38 | 23.80 | Both |
| chr4 | 58 | 28457187 | 28457260 | Thr | AGT | agtttccgtg | cggttggtca | 0 | 0 | 81.87 | 65.65 | 16.22 | Both |
| chr4 | 60 | 28462413 | 28462484 | Ala | CGC | ttcgcgggca | gctggatatt | 0 | 0 | 70.09 | 49.55 | 20.54 | Both |
| chr4 | 61 | 28479364 | 28479436 | Lys | TTT | tcgtacgagg | aactcgtcat | 0 | 0 | 68.48 | 60.01 | 8.47 | Both |
| chr4 | 62 | 28495253 | 28495325 | Phe | GAA | ttacggagta | gcttattttg | 0 | 0 | 84.19 | 62.58 | 21.61 | Both |
| chr4 | 63 | 28605461 | 28605533 | Arg | CCG | ttcggcggtt | tcgtttttcg | 0 | 0 | 69.88 | 52.79 | 17.09 | Both |
| chr4 | 64 | 28672826 | 28672930 | Leu | CAA | tgtcccaggt | catgaatttt | 28672864 | 28672885 | 69.10 | 45.66 | 23.44 | Both |
| chr4 | 65 | 28676666 | 28676738 | Met | CAT | gaagacagtt | acgcatccgt | 0 | 0 | 76.58 | 56.44 | 20.14 | Both |
| chr4 | 66 | 28682716 | 28682788 | Lys | TTT | tcttcgagaa | taagttgcgg | 0 | 0 | 83.80 | 62.78 | 21.02 | Both |
| chr4 | 67 | 28702894 | 28702965 | Glu | CTC | gtttgtaact | agaagctgtt | 0 | 0 | 76.61 | 53.94 | 22.67 | Both |
| chr4 | 68 | 28709483 | 28709564 | Leu | AAG | cacgacccac | agcacttttc | 0 | 0 | 68.19 | 48.51 | 19.68 | Both |
| chr4 | 71 | 82106566 | 82106638 | Lys | TTT | ggccaggagt | tttgtggttt | 0 | 0 | 70.14 | 55.40 | 14.74 | Both |
| chr4 | 72 | 138168495 | 138168566 | Glu | CTC | ccaaataagt | actttatttt | 0 | 0 | 72.69 | 50.02 | 22.67 | Both |
| chr4 | 73 | 119458593 | 119458511 | Leu | TAA | gcatgcctgt | gctcaaggtt | 0 | 0 | 80.77 | 49.66 | 31.11 | Both |
| chr4 | 75 | 75047751 | 75047679 | Phe | GAA | tttacgagta | gaaacaggtc | 0 | 0 | 62.87 | 48.87 | 14.00 | Both |
| chr4 | 76 | 28702440 | 28702368 | Phe | GAA | cgtgggcgga | gaaaagcgcc | 0 | 0 | 84.19 | 62.58 | 21.61 | Both |
| chr4 | 77 | 28684724 | 28684652 | Met | CAT | tttgctgtct | gctgctattt | 0 | 0 | 76.58 | 56.44 | 20.14 | Both |
| chr4 | 78 | 28675794 | 28675713 | Leu | AAG | gcctgcgggc | gagtgagttt | 0 | 0 | 69.84 | 50.16 | 19.68 | Both |
| chr4 | 79 | 28673439 | 28673368 | Gln | CTG | tgctaaggag | ttcatatttc | 0 | 0 | 73.65 | 50.36 | 23.29 | Both |
| chr4 | 80 | 28625129 | 28625025 | Leu | CAA | cacgcagggt | catgattttc | 28625091 | 28625070 | 67.20 | 43.76 | 23.44 | Both |
| chr4 | 81 | 28591551 | 28591480 | Ala | AGC | caagcgcgag | gggttttttt | 0 | 0 | 77.18 | 53.38 | 23.80 | Both |
| chr4 | 82 | 28566219 | 28566148 | Ala | AGC | gtttcgataa | gttgtttttg | 0 | 0 | 77.18 | 53.38 | 23.80 | Both |
| chr4 | 83 | 28551521 | 28551448 | Phe | GAA | acctagggta | gatgtctttt | 0 | 0 | 70.49 | 49.61 | 20.88 | Both |
| chr4 | 84 | 28545136 | 28545065 | Ala | TGC | ctttaagcaa | agtgatggtt | 0 | 0 | 70.95 | 44.60 | 26.35 | Both |
| chr4 | 85 | 28535226 | 28535154 | Phe | GAA | gtccggagcg | gatgcctttt | 0 | 0 | 82.45 | 60.84 | 21.61 | Both |
| chr4 | 86 | 28530898 | 28530827 | Glu | CTC | nnnnnnnnnn | agtgctggtt | 0 | 0 | 71.82 | 45.47 | 26.35 | Both |
| chr4 | 87 | 28525106 | 28525035 | Ala | AGC | gggtcgtcaa | ggttccgttt | 0 | 0 | 75.28 | 49.75 | 25.53 | Both |
| chr4 | 88 | 28511345 | 28511273 | Phe | GAA | gctcaaagca | ggtttgtttt | 0 | 0 | 82.45 | 60.84 | 21.61 | Both |
| chr4 | 89 | 28510399 | 28510328 | Ala | TGC | ttttcaggaa | aacgttggtt | 0 | 0 | 72.54 | 54.81 | 17.73 | Both |
| chr4 | 92 | 28474641 | 28474569 | Arg | CCG | acctgcgtgc | tgtccttact | 0 | 0 | 69.88 | 52.79 | 17.09 | Both |
| chr4 | 94 | 28426761 | 28426690 | Ala | CGC | tcaagggtcg | ctcttcattt | 0 | 0 | 64.40 | 42.92 | 21.48 | Eufind |
| chr4 | 95 | 28414499 | 28414428 | Ala | CGC | acttgcgcca | aggcgattat | 0 | 0 | 74.81 | 51.23 | 23.58 | Both |
| chr4 | 96 | 28399279 | 28399208 | Ala | AGC | ttttcaaggt | gtcttttgta | 0 | 0 | 75.78 | 57.59 | 18.19 | Both |
| chr4 | 97 | 28368494 | 28368423 | Ala | TGC | tcaggattcg | cccactttag | 0 | 0 | 73.35 | 58.09 | 15.26 | Both |
| chr4 | 98 | 28338262 | 28338181 | Ser | GCT | cttaacatgt | tttcgtgagg | 0 | 0 | 85.34 | 57.77 | 27.57 | Both |
| chr4 | 99 | 28284014 | 28283942 | Arg | TCG | gaagtcgtag | gtgctccctt | 0 | 0 | 69.08 | 49.20 | 19.88 | Both |
| chr4 | 100 | 28233337 | 28233264 | Thr | CGT | gcttccgcgt | gatgtttttc | 0 | 0 | 78.43 | 59.97 | 18.46 | Both |
| chr4 | 101 | 28217983 | 28217902 | Leu | AAG | atacaggtgt | aacttattgc | 0 | 0 | 69.84 | 50.16 | 19.68 | Both |
| chr4 | 102 | 28213859 | 28213786 | Thr | TGT | tacacctgtg | taaagttttg | 0 | 0 | 84.08 | 63.38 | 20.70 | Both |
| chr4 | 103 | 27678579 | 27678509 | Gly | GCC | tgtacagcaa | gcggtgacgt | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| chr4 | 104 | 27678159 | 27678088 | Met | CAT | tttcgcgtgt | gccttttttt | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr4 | 105 | 27572852 | 27572781 | Gln | TTG | gttcatgtgg | tcttaactgt | 0 | 0 | 68.31 | 52.31 | 16.00 | Both |
| chr4 | 106 | 27568323 | 27568252 | Gln | CTG | atagcagatt | agcattggat | 0 | 0 | 66.59 | 50.59 | 16.00 | Both |
| chr4 | 107 | 27532587 | 27532515 | Val | AAC | ttcgcagtaa | cgaactggta | 0 | 0 | 86.79 | 61.60 | 25.19 | Both |
| chr4 | 108 | 27499055 | 27498982 | Val | CAC | cttaataggg | ttatcctgta | 0 | 0 | 67.05 | 45.86 | 21.19 | Both |
| chr4 | 109 | 27491323 | 27491241 | Leu | TAA | agccccagtc | ggttaagttt | 0 | 0 | 79.48 | 51.76 | 27.72 | Both |
| chr4 | 110 | 27437602 | 27437521 | Ser | CGA | ggttcccgag | ttgctgtttt | 0 | 0 | 88.07 | 58.89 | 29.18 | Both |
| chr4 | 111 | 27435867 | 27435795 | Arg | ACG | ttacgggcac | cttgtgctca | 0 | 0 | 58.18 | 47.63 | 10.55 | Both |
| chr4 | 112 | 27421523 | 27421451 | Val | AAC | cggcagggtt | agtggtcccc | 0 | 0 | 86.73 | 61.61 | 25.12 | Both |
| chr4 | 113 | 27365528 | 27365457 | Met | CAT | aaggcacgac | actccctgtt | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr4 | 114 | 27364506 | 27364434 | Lys | TTT | gcaatggaga | aaacttacca | 0 | 0 | 70.30 | 58.96 | 11.34 | Both |
| chr4 | 115 | 27348042 | 27347971 | Asp | GTC | cttcaaggct | acaaatggat | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr4 | 116 | 27314338 | 27314257 | Ser | AGA | tgccatgtct | tttgaaattt | 0 | 0 | 88.01 | 56.90 | 31.11 | Both |
| chr4 | 117 | 27308821 | 27308750 | Gln | CTG | taccaagagg | actcaaggat | 0 | 0 | 52.90 | 36.81 | 16.09 | Both |
| chr4 | 118 | 27302911 | 27302830 | Ser | AGA | cgttctttat | ataacgtttc | 0 | 0 | 88.50 | 57.39 | 31.11 | Both |
| chr4 | 119 | 27268176 | 27268095 | Ser | TGA | atacggctgt | gttttagcct | 0 | 0 | 87.56 | 59.22 | 28.34 | Both |
| chr4 | 120 | 27096404 | 27096332 | Lys | TTT | ttgctaggga | ctaacggagg | 0 | 0 | 81.41 | 62.43 | 18.98 | Both |
| chr4 | 121 | 27094395 | 27094324 | Met | CAT | taatccggtc | cgagttttag | 0 | 0 | 67.09 | 39.08 | 28.01 | Both |
| chr4 | 123 | 27033855 | 27033782 | Ile | AAT | tattaccgag | gatgttttcc | 0 | 0 | 70.71 | 61.29 | 9.42 | Eufind |
| chr4 | 125 | 26988654 | 26988582 | Val | AAC | caccaagtaa | gtgtgcagtt | 0 | 0 | 67.33 | 44.45 | 22.88 | tRNAscan |
| chr4 | 126 | 26971837 | 26971765 | Arg | ACG | atctgtcgac | gaaactgctt | 0 | 0 | 65.99 | 49.09 | 16.90 | Both |
| chr4 | 127 | 26963662 | 26963590 | Val | CAC | cgtagaggct | ttcttcgctc | 0 | 0 | 82.69 | 61.42 | 21.27 | Both |
| chr4 | 128 | 26939429 | 26939356 | Ile | AAT | acgtcaaggc | cttagttgtt | 0 | 0 | 78.21 | 59.72 | 18.49 | Both |
| chr4 | 129 | 26795443 | 26795371 | Met | CAT | ataaacggga | ttgttttagt | 0 | 0 | 75.06 | 52.49 | 22.57 | Both |
| chr4 | 130 | 26612458 | 26612386 | Ala | AGC | ttttccacga | gttttatgta | 0 | 0 | 56.31 | 36.68 | 19.63 | Both |
| chr4 | 131 | 26566892 | 26566819 | Thr | AGT | caagcatggt | gtcgtagttt | 0 | 0 | 83.05 | 63.49 | 19.56 | Both |
| chr4 | 132 | 26314111 | 26314040 | Trp | CCA | gtccctcgta | acggttttta | 0 | 0 | 74.81 | 54.94 | 19.87 | Both |
| chr4 | 133 | 26312967 | 26312896 | Met | CAT | ctgtcagtgt | atctggattt | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr4 | 134 | 26302150 | 26302079 | Trp | CCA | ctactccagt | ggggtggttg | 0 | 0 | 74.00 | 52.21 | 21.79 | Both |
| chr4 | 135 | 26297493 | 26297422 | Met | CAT | ctgttgtgac | tgtggcgttg | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr4 | 136 | 26296977 | 26296896 | Ser | TGA | aaggaggcac | gtgtgtgttt | 0 | 0 | 88.25 | 57.14 | 31.11 | Both |
| chr4 | 137 | 26296116 | 26296045 | Gln | TTG | ttgtggtgtt | ctaacacttt | 0 | 0 | 68.31 | 52.31 | 16.00 | Both |
| chr4 | 138 | 26295561 | 26295490 | Gln | TTG | aatggaaggt | attctaattt | 0 | 0 | 64.01 | 51.00 | 13.01 | Both |
| chr4 | 139 | 26289523 | 26289442 | Ser | GCT | tagggtctgt | ctctggtttc | 0 | 0 | 82.07 | 55.08 | 26.99 | Both |
| |
Sequence Name | tRNA # | tRNA Bounds | tRNA Isotype | Anticodon | Upstream Region | Downstream Region | Intron Bounds | Scores | First-Pass Scanner |
| Begin | End | Begin | End | Total (Cove) | HMM | 2' Str |
| chr5 | 5 | 95926062 | 95926134 | Met | CAT | atatctagtt | acgcacccgt | 0 | 0 | 76.58 | 56.44 | 20.14 | Both |
| chr5 | 8 | 21808724 | 21808652 | Val | TAC | gtgcacatcg | gaaatctaca | 0 | 0 | 66.24 | 46.24 | 20.00 | Both |
| |
| chr6 | 3 | 177767116 | 177767188 | Val | CAC | acccgagcag | atttcttcta | 0 | 0 | 81.44 | 62.03 | 19.41 | Both |
| chr6 | 4 | 177772796 | 177772877 | Leu | AAG | ctagaacgga | gtttgttgtg | 0 | 0 | 70.30 | 48.92 | 21.38 | Both |
| chr6 | 5 | 177854186 | 177854258 | Val | CAC | agccaagcag | tttccttcta | 0 | 0 | 85.50 | 61.78 | 23.72 | Both |
| chr6 | 6 | 177872180 | 177872261 | Leu | AAG | gtagccgaga | gactgtggta | 0 | 0 | 72.29 | 52.06 | 20.23 | Both |
| chr6 | 7 | 177891163 | 177891234 | Ala | TGC | aagcgcggac | gtgttctttt | 0 | 0 | 70.20 | 52.30 | 17.90 | Both |
| chr6 | 8 | 177891989 | 177892061 | Lys | CTT | gttaccggac | tagttggtcg | 0 | 0 | 80.47 | 57.81 | 22.66 | Both |
| chr6 | 9 | 177906793 | 177906721 | Val | CAC | agctcaggca | cgtttttttg | 0 | 0 | 87.39 | 62.20 | 25.19 | Both |
| chr6 | 10 | 177906372 | 177906300 | Lys | CTT | tagccaagct | gagttccttt | 0 | 0 | 80.47 | 57.81 | 22.66 | Both |
| chr6 | 12 | 177876119 | 177876047 | Thr | TGT | actcgcagct | gtttgtattt | 0 | 0 | 79.46 | 56.92 | 22.54 | Both |
| chr6 | 13 | 177873382 | 177873311 | Pro | TGG | gttaacagcc | agtttttgtt | 0 | 0 | 76.15 | 54.09 | 22.06 | Both |
| chr6 | 14 | 177872952 | 177872880 | Val | AAC | tgaagtgtgg | accccaagtg | 0 | 0 | 85.07 | 59.88 | 25.19 | Both |
| chr6 | 15 | 177854680 | 177854599 | Leu | AAG | ccagggggaa | gcttggcgtg | 0 | 0 | 71.96 | 50.58 | 21.38 | Both |
| chr6 | 16 | 177773312 | 177773240 | Val | CAC | aagcgagccg | cttccttcta | 0 | 0 | 87.39 | 62.20 | 25.19 | Both |
| chr6 | 17 | 177767589 | 177767508 | Leu | AAG | ccaggagaaa | gcttgctgtg | 0 | 0 | 63.16 | 43.24 | 19.92 | Both |
| chr6 | 19 | 138808213 | 138808140 | Asp | GTC | aagactgtcg | gcagcagccc | 0 | 0 | 39.21 | 13.73 | 25.48 | Both |
| |
| chr7 | 2 | 23551949 | 23552020 | His | GTG | ccggtagctc | ttgtggaaac | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr7 | 3 | 57983048 | 57983120 | Lys | CTT | tcctgcgact | gtgttcattt | 0 | 0 | 80.72 | 58.28 | 22.44 | Both |
| chr7 | 4 | 58870314 | 58870385 | Cys | GCA | agtaggtgaa | tcccggatgt | 0 | 0 | 72.76 | 54.65 | 18.11 | Both |
| chr7 | 5 | 68964187 | 68964259 | Arg | TCG | ggaaccaggt | aatgatggtg | 0 | 0 | 76.93 | 58.34 | 18.59 | Both |
| chr7 | 6 | 83331814 | 83331895 | Leu | AAG | tttaccggct | tgtggtcttt | 0 | 0 | 69.84 | 50.16 | 19.68 | Both |
| chr7 | 7 | 83348306 | 83348387 | Leu | TAG | cagctcgtcc | gtggtatgtt | 0 | 0 | 68.82 | 48.37 | 20.45 | Both |
| chr7 | 8 | 83355989 | 83356060 | Pro | TGG | ttccaattct | ctttctgttt | 0 | 0 | 79.61 | 57.55 | 22.06 | Both |
| chr7 | 9 | 83418456 | 83418528 | Thr | TGT | ttctccgtga | ttcgagttta | 0 | 0 | 78.79 | 56.36 | 22.43 | Both |
| chr7 | 10 | 83420045 | 83420133 | Tyr | GTA | tgtcgcactc | gaggttgatg | 83420082 | 83420097 | 73.51 | 47.10 | 26.41 | Both |
| chr7 | 11 | 83420782 | 83420853 | Pro | TGG | ctaacacggt | tcaggtttac | 0 | 0 | 76.15 | 54.09 | 22.06 | Both |
| chr7 | 12 | 85749062 | 85749134 | Arg | ACG | tttcgtctca | gtggggctgt | 0 | 0 | 72.37 | 52.49 | 19.88 | Both |
| chr7 | 13 | 97651821 | 97651892 | Asp | GTC | acccaagtcg | gtaggagtcc | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr7 | 14 | 136058079 | 136058150 | Cys | GCA | agcaggtgaa | tcccggatgt | 0 | 0 | 74.26 | 55.02 | 19.24 | Both |
| chr7 | 15 | 152189982 | 152190054 | Ala | AGC | aatgtcatct | aactttacca | 0 | 0 | 66.36 | 41.87 | 24.49 | Both |
| chr7 | 16 | 165600491 | 165600564 | Ile | AAT | agcatcagtt | gtgtcgcttt | 0 | 0 | 80.66 | 62.17 | 18.49 | Both |
| chr7 | 18 | 121253960 | 121253888 | Lys | CTT | tgtgacaggc | cggcttgaaa | 0 | 0 | 80.72 | 58.28 | 22.44 | Both |
| chr7 | 19 | 110831998 | 110831927 | Asn | GTT | tggggtccct | acagatattg | 0 | 0 | 55.98 | 49.59 | 6.39 | Eufind |
| chr7 | 21 | 83400655 | 83400566 | Tyr | GTA | gagcgtgcac | ggtgcctgat | 83400618 | 83400602 | 74.83 | 48.42 | 26.41 | Both |
| chr7 | 22 | 83397432 | 83397339 | Tyr | GTA | cagcgtgcac | agtgcttgac | 83397395 | 83397375 | 71.96 | 48.54 | 23.42 | Both |
| chr7 | 23 | 83394932 | 83394840 | Tyr | GTA | cagcacgcac | agtgcctgac | 83394895 | 83394876 | 75.22 | 48.81 | 26.41 | Both |
| chr7 | 24 | 83391551 | 83391458 | Tyr | GTA | aggtgtgcgc | agtactttat | 83391514 | 83391494 | 74.08 | 47.67 | 26.41 | Both |
| chr7 | 25 | 83354222 | 83354150 | Thr | TGT | tgtgcgttgt | tagcgatagg | 0 | 0 | 75.16 | 55.60 | 19.56 | Both |
| chr7 | 27 | 83335885 | 83335813 | Thr | TGT | tccacgcgag | gtgtgttttt | 0 | 0 | 79.22 | 56.68 | 22.54 | Both |
| chr7 | 28 | 83335490 | 83335419 | Pro | AGG | tttatgtcgt | tcgctttttc | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr7 | 29 | 83331115 | 83331044 | Pro | AGG | ttttacaggt | tctgttcttt | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr7 | 30 | 55370555 | 55370482 | Lys | CTT | gttcagaatt | gttttacttt | 0 | 0 | 50.70 | 36.28 | 14.42 | Both |
| chr7 | 31 | 44371218 | 44371147 | Gln | CTG | tatgcgtggc | gcattggtgc | 0 | 0 | 73.65 | 50.36 | 23.29 | Both |
| chr7 | 32 | 23551301 | 23551230 | His | GTG | ccagtagctc | ttgtgaggac | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr7 | 33 | 23549540 | 23549469 | His | GTG | ccggtagctc | ttgtgggaac | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr7 | 35 | 18958849 | 18958768 | Ser | GCT | atgcttcggg | aagtaacggc | 0 | 0 | 85.34 | 57.77 | 27.57 | Both |
| chr7 | 36 | 4992586 | 4992515 | Glu | TTC | tctcgtcatc | tgcggatttt | 0 | 0 | 76.26 | 53.72 | 22.54 | Both |
| |
| chr8 | 1 | 10644460 | 10644531 | Cys | GCA | agtcagcaga | caatttcctt | 0 | 0 | 60.48 | 38.43 | 22.05 | Eufind |
| chr8 | 3 | 68748158 | 68748250 | Tyr | GTA | cacacacgtc | gacgagtgcg | 68748195 | 68748214 | 73.04 | 46.63 | 26.41 | Both |
| chr8 | 4 | 68748778 | 68748866 | Tyr | GTA | ttgcccgctc | gagactcatc | 68748815 | 68748830 | 70.33 | 43.92 | 26.41 | Both |
| chr8 | 5 | 68748970 | 68749042 | Ala | AGC | gcccagccgt | gttttctttc | 0 | 0 | 63.68 | 41.02 | 22.66 | Both |
| chr8 | 9 | 125738471 | 125738399 | Met | CAT | cttgctaggt | caatactttt | 0 | 0 | 79.85 | 59.49 | 20.36 | Both |
| chr8 | 12 | 97842144 | 97842063 | Ser | AGA | tataccgcca | ggattaatag | 0 | 0 | 88.01 | 56.90 | 31.11 | Both |
| chr8 | 14 | 39453441 | 39453360 | Ser | TGA | atataggcgg | gttttggccg | 0 | 0 | 87.32 | 56.21 | 31.11 | Both |
| |
| chr9 | 2 | 94025808 | 94025878 | Gly | GCC | gcctatgtac | agagccttat | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| chr9 | 3 | 69501739 | 69501658 | Ser | TGA | tctcctcgtg | gaagcaggtg | 0 | 0 | 90.86 | 62.33 | 28.53 | Both |
| chr9 | 6 | 22426242 | 22426169 | Asn | GTT | cagcatggga | caccctcgtt | 0 | 0 | 82.24 | 58.97 | 23.27 | Both |
| chr9 | 8 | 6127620 | 6127548 | Val | TAC | catggcatgt | tggtgaggtc | 0 | 0 | 53.39 | 46.33 | 7.06 | Both |
| |
| chr11 | 3 | 53249194 | 53249275 | Ser | CGA | ggttttggaa | gctttttttt | 0 | 0 | 89.14 | 63.50 | 25.64 | Both |
| chr11 | 5 | 97248393 | 97248464 | Asp | GTC | tttgtgcagt | gcatgagagt | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr11 | 6 | 99687429 | 99687500 | Asp | GTC | acacaaccac | atacgacttt | 0 | 0 | 74.76 | 50.21 | 24.55 | Both |
| chr11 | 7 | 99688172 | 99688243 | Trp | CCA | agcccagcag | agtcgtgttt | 0 | 0 | 71.65 | 49.85 | 21.80 | Both |
| chr11 | 10 | 126250823 | 126250894 | Ala | TGC | tgcgaggcga | gggttttctt | 0 | 0 | 72.71 | 49.12 | 23.59 | Both |
| chr11 | 12 | 126250576 | 126250505 | Asp | GTC | gtatggcttg | gctaacagaa | 0 | 0 | 72.92 | 48.38 | 24.54 | Both |
| chr11 | 13 | 126240079 | 126240008 | Ala | TGC | ggaaagggag | ttacggtttt | 0 | 0 | 79.03 | 55.29 | 23.74 | Both |
| |
| chr12 | 1 | 9816650 | 9816721 | Asp | GTC | gcatggcttg | gctaacagaa | 0 | 0 | 68.17 | 50.50 | 17.67 | Both |
| chr12 | 2 | 20009260 | 20009331 | Ala | CGC | ctttcggctg | aaacagccgg | 0 | 0 | 73.12 | 53.51 | 19.61 | Both |
| chr12 | 5 | 20009705 | 20009635 | Gly | GCC | catgccagaa | aggtcttttt | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| |
| chr13 | 1 | 27004347 | 27004436 | Tyr | GTA | cacagcggag | cttcgtgtac | 27004384 | 27004400 | 77.27 | 50.87 | 26.40 | Both |
| chr13 | 2 | 27004771 | 27004843 | Ala | AGC | agcagcaggc | cttcgcattt | 0 | 0 | 63.68 | 41.02 | 22.66 | Both |
| chr13 | 3 | 42929390 | 42929482 | Ile | TAT | gctcagcgga | tgaccctttt | 42929428 | 42929446 | 68.75 | 40.55 | 28.20 | Both |
| chr13 | 5 | 44392348 | 44392430 | Leu | TAG | cgccaaagca | aagctgaatt | 0 | 0 | 37.52 | 26.57 | 10.95 | Both |
| chr13 | 10 | 136730533 | 136730462 | Glu | TTC | actcagtagt | caacagtggt | 0 | 0 | 75.00 | 51.69 | 23.31 | Both |
| chr13 | 11 | 136726124 | 136726053 | Glu | TTC | actcagtagt | caacagtggt | 0 | 0 | 75.00 | 51.69 | 23.31 | Both |
| chr13 | 13 | 70528371 | 70528301 | Gly | CCC | tataccaaca | agcgactttt | 0 | 0 | 76.98 | 51.05 | 25.93 | Both |
| |
| chr14 | 1 | 14306656 | 14306728 | Phe | GAA | ttccaataca | gggcttccgt | 0 | 0 | 84.19 | 62.58 | 21.61 | Both |
| chr14 | 2 | 14312369 | 14312441 | Lys | TTT | tcttccgtga | gctttaactt | 0 | 0 | 83.80 | 62.78 | 21.02 | Both |
| chr14 | 3 | 14315550 | 14315622 | Phe | GAA | tcatgtcctt | gagcttttgt | 0 | 0 | 84.19 | 62.58 | 21.61 | Both |
| chr14 | 4 | 14320968 | 14321040 | Val | TAC | ccctgcacgc | cgacatggtc | 0 | 0 | 80.95 | 55.91 | 25.04 | Both |
| chr14 | 5 | 14321332 | 14321404 | Val | TAC | gttcttgtga | agggttatta | 0 | 0 | 85.12 | 60.08 | 25.04 | Both |
| chr14 | 6 | 38028484 | 38028556 | Val | TAC | tacaagattc | tggttgcaaa | 0 | 0 | 83.40 | 58.37 | 25.03 | Both |
| chr14 | 8 | 74412262 | 74412333 | Pro | AGG | tacgagccgt | tnnnnnnnnn | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr14 | 17 | 14320729 | 14320644 | Arg | TCT | gtacgtgtct | ctttttgttt | 14320692 | 14320680 | 71.13 | 50.68 | 20.45 | Both |
| chr14 | 18 | 14320268 | 14320186 | Leu | TAA | ttcgtcaatt | aaggttagtt | 0 | 0 | 79.52 | 46.13 | 33.39 | Both |
| chr14 | 19 | 14316690 | 14316618 | Lys | TTT | ttctttaggg | gatgctattt | 0 | 0 | 79.89 | 58.88 | 21.01 | Both |
| chr14 | 20 | 8103504 | 8103423 | Ser | GCT | tgttacatag | gccgtctttt | 0 | 0 | 85.83 | 58.25 | 27.58 | Both |
| |
| chr15 | 3 | 62474555 | 62474626 | His | GTG | tcagtagctt | ggaggggaga | 0 | 0 | 64.63 | 37.18 | 27.45 | Both |
| chr15 | 4 | 83677101 | 83677030 | Asp | GTC | tttggggggg | gctaattatg | 0 | 0 | 59.75 | 41.31 | 18.44 | Both |
| |
| chr16 | 1 | 7882369 | 7882441 | Lys | TTT | tatgctaaga | gattgtttta | 0 | 0 | 83.80 | 62.78 | 21.02 | Both |
| chr16 | 2 | 7882959 | 7883030 | Gln | CTG | gtaagagggt | taactttttt | 0 | 0 | 73.65 | 50.36 | 23.29 | Both |
| chr16 | 3 | 7884087 | 7884175 | Arg | TCT | cccgcgaggt | attttatttc | 7884124 | 7884139 | 71.40 | 50.95 | 20.45 | Both |
| chr16 | 4 | 7888869 | 7888939 | Gly | GCC | cagtagtcac | agagccttat | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| chr16 | 5 | 7948014 | 7948085 | Trp | CCA | atggccggcc | gcgaatgctt | 0 | 0 | 74.00 | 52.21 | 21.79 | Both |
| chr16 | 6 | 7948526 | 7948607 | Ser | GCT | gctatccgga | gctacggaag | 0 | 0 | 85.34 | 57.77 | 27.57 | Both |
| chr16 | 7 | 7948827 | 7948900 | Thr | AGT | cccttccggc | aagtgtttcc | 0 | 0 | 84.06 | 64.45 | 19.61 | Both |
| chr16 | 8 | 7949259 | 7949332 | Ile | AAT | ctgagcagct | tagttgaaac | 0 | 0 | 80.66 | 62.17 | 18.49 | Both |
| chr16 | 9 | 7970889 | 7970960 | Gly | TCC | cagtacctaa | agtgcatttt | 0 | 0 | 73.26 | 52.83 | 20.43 | Both |
| chr16 | 11 | 19386348 | 19386418 | Gly | CCC | aagtttcaaa | actcccacct | 0 | 0 | 64.90 | 53.82 | 11.08 | Both |
| chr16 | 12 | 26730088 | 26730159 | Thr | CGT | tgggctgtca | gaaacccgag | 0 | 0 | 79.77 | 59.88 | 19.89 | Both |
| chr16 | 13 | 33426496 | 33426567 | Gln | TTG | gcagccagca | cgccgtatct | 0 | 0 | 73.77 | 50.83 | 22.94 | Both |
| chr16 | 14 | 48908938 | 48909009 | Cys | GCA | atccagcaga | cgcgttgttt | 0 | 0 | 77.71 | 58.47 | 19.24 | Both |
| chr16 | 15 | 70301112 | 70301184 | Arg | CCT | cgtgtcacaa | aaagtggcaa | 0 | 0 | 73.88 | 56.31 | 17.57 | Both |
| chr16 | 16 | 70302311 | 70302383 | Arg | TCG | catagaaggc | gaatatttta | 0 | 0 | 70.52 | 51.50 | 19.02 | Both |
| chr16 | 17 | 77980509 | 77980438 | Met | CAT | cttcacagtc | tggacttgtt | 0 | 0 | 68.98 | 40.96 | 28.02 | Both |
| chr16 | 18 | 70301702 | 70301630 | Arg | CCT | atcttaccgc | ggactgtgct | 0 | 0 | 73.41 | 55.84 | 17.57 | Both |
| chr16 | 20 | 63359235 | 63359163 | Arg | CCG | atcttgtggt | cgtgtgatta | 0 | 0 | 65.49 | 49.24 | 16.25 | Both |
| chr16 | 23 | 49222950 | 49222879 | Cys | GCA | gtggcgtggt | ttgcgtacgt | 0 | 0 | 77.71 | 58.47 | 19.24 | Both |
| chr16 | 24 | 49222184 | 49222113 | Cys | GCA | caccggcaga | ctttgacctt | 0 | 0 | 77.71 | 58.47 | 19.24 | Both |
| chr16 | 25 | 48910643 | 48910572 | Cys | GCA | gcagcggcgc | cggtggtttt | 0 | 0 | 77.18 | 59.26 | 17.92 | Both |
| chr16 | 26 | 48900984 | 48900913 | Cys | GCA | ttccaataga | tgcagctagc | 0 | 0 | 68.22 | 48.98 | 19.24 | Both |
| chr16 | 27 | 48869094 | 48869023 | Cys | GCA | aatgaacaga | tccgtgatgt | 0 | 0 | 60.68 | 41.44 | 19.24 | Both |
| chr16 | 28 | 48778859 | 48778786 | Asn | GTT | aatcgtcgcg | cggtgggttt | 0 | 0 | 82.24 | 58.97 | 23.27 | Both |
| chr16 | 29 | 7975724 | 7975651 | Ile | AAT | attaacaact | gagggtggtt | 0 | 0 | 79.24 | 60.75 | 18.49 | Both |
| chr16 | 30 | 7975362 | 7975281 | Ser | AGA | aagaggcctt | tgagattttt | 0 | 0 | 88.01 | 56.90 | 31.11 | Both |
| chr16 | 31 | 7974985 | 7974912 | Thr | AGT | gggcagcctt | ttattcaatt | 0 | 0 | 82.32 | 62.71 | 19.61 | Both |
| chr16 | 32 | 7972227 | 7972156 | Pro | CGG | ttcgtacgtc | tcctttacgt | 0 | 0 | 76.52 | 54.46 | 22.06 | Both |
| chr16 | 33 | 7971632 | 7971561 | Asp | GTC | gaccggtcac | aatccaaatg | 0 | 0 | 61.45 | 42.33 | 19.12 | Both |
| chr16 | 34 | 7970296 | 7970225 | Trp | CCA | ctgttgggca | aaccaaacat | 0 | 0 | 74.81 | 54.94 | 19.87 | Both |
| chr16 | 35 | 7899577 | 7899504 | Thr | AGT | gctttacccc | gagttggtgg | 0 | 0 | 79.72 | 61.58 | 18.14 | Both |
| chr16 | 36 | 7899047 | 7898966 | Ser | CGA | cccgcacgcg | tcagtacttt | 0 | 0 | 92.09 | 62.91 | 29.18 | Both |
| chr16 | 37 | 7883570 | 7883489 | Leu | TAG | ctttcacgca | ggccggagtt | 0 | 0 | 72.19 | 50.81 | 21.38 | Both |
| |
Sequence Name | tRNA # | tRNA Bounds | tRNA Isotype | Anticodon | Upstream Region | Downstream Region | Intron Bounds | Scores | First-Pass Scanner |
| Begin | End | Begin | End | Total (Cove) | HMM | 2' Str |
| chr17 | 2 | 74955649 | 74955577 | Phe | GAA | ccagaagcgt | gctactttta | 0 | 0 | 84.19 | 62.58 | 21.61 | Both |
| chr17 | 3 | 23827747 | 23827676 | Glu | TTC | tatcgtcgtc | cgccaagatt | 0 | 0 | 76.26 | 53.72 | 22.54 | Both |
| chr17 | 4 | 20079372 | 20079301 | Glu | TTC | cagcagcact | agctgctttt | 0 | 0 | 75.00 | 51.69 | 23.31 | Both |
| chr17 | 6 | 10111802 | 10111729 | Asn | GTT | gagtaactgg | gccagtgctt | 0 | 0 | 80.50 | 57.23 | 23.27 | Both |
| |
| chr19 | 1 | 1150192 | 1150265 | Asn | GTT | nnnnnnnnnn | cgcgccaatt | 0 | 0 | 82.24 | 58.97 | 23.27 | Both |
| chr19 | 2 | 4612897 | 4612968 | Gly | TCC | tgttaccgtg | gaagaggatg | 0 | 0 | 76.83 | 56.40 | 20.43 | Both |
| chr19 | 3 | 11957913 | 11957986 | Ala | GGC | gtcatttgag | cattagttga | 0 | 0 | 46.34 | 29.27 | 17.07 | Both |
| chr19 | 4 | 39696061 | 39696134 | Thr | AGT | ttgcacgggc | caaccgagcg | 0 | 0 | 84.06 | 64.45 | 19.61 | Both |
| chr19 | 6 | 51918323 | 51918238 | SeC(e) | TCA | ttattatttc | gacagccacg | 0 | 0 | 75.99 | 0.00 | 0.00 | Eufind |
| chr19 | 8 | 4613512 | 4613440 | Val | CAC | acctttaccg | gctctgctct | 0 | 0 | 62.45 | 44.73 | 17.72 | Both |
| |
| chr20 | 1 | 3291264 | 3291336 | Arg | CCG | gtagcggcag | ttgcgaggtt | 0 | 0 | 69.88 | 52.79 | 17.09 | Both |
| chr20 | 2 | 3293341 | 3293413 | Arg | CCT | gccaccgtcc | aaaatgggat | 0 | 0 | 71.53 | 57.48 | 14.05 | Both |
| chr20 | 3 | 3299000 | 3299071 | Pro | TGG | ttattgcgct | tcttctattt | 0 | 0 | 76.15 | 54.09 | 22.06 | Both |
| chr20 | 4 | 3305212 | 3305284 | Lys | CTT | catgatgtca | cagcttttgc | 0 | 0 | 80.47 | 57.81 | 22.66 | Both |
| chr20 | 5 | 3312272 | 3312343 | Pro | CGG | acacctggga | caaaagtggt | 0 | 0 | 65.47 | 50.55 | 14.92 | Both |
| chr20 | 6 | 3321724 | 3321795 | Pro | TGG | acaagccggc | ctttttcctt | 0 | 0 | 59.12 | 49.13 | 9.99 | Both |
| chr20 | 7 | 3323668 | 3323739 | Pro | AGG | taagttgcgc | ggcttttggt | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr20 | 8 | 3325897 | 3325969 | Lys | CTT | cggtaaggga | acttgttttc | 0 | 0 | 80.47 | 57.81 | 22.66 | Both |
| chr20 | 10 | 3329852 | 3329924 | Arg | CCT | tttgacagct | agacaacacc | 0 | 0 | 73.88 | 56.31 | 17.57 | Both |
| chr20 | 12 | 14398040 | 14398111 | Thr | CGT | tcgtaacgca | ggtgtccagc | 0 | 0 | 80.42 | 57.57 | 22.85 | Both |
| chr20 | 13 | 16183638 | 16183709 | Ala | TGC | cttgaggcaa | gggttttggc | 0 | 0 | 71.24 | 47.70 | 23.54 | Both |
| chr20 | 14 | 20714096 | 20714177 | Leu | AAG | tctacagctg | gggttggttt | 0 | 0 | 69.84 | 50.16 | 19.68 | Both |
| chr20 | 15 | 28390630 | 28390723 | Ile | TAT | accaccacgt | tgttttcttc | 28390668 | 28390687 | 43.86 | 25.01 | 18.85 | Both |
| chr20 | 16 | 55659173 | 55659255 | Leu | CAG | tttctgggaa | agtgttattt | 0 | 0 | 75.90 | 46.89 | 29.01 | Both |
| chr20 | 17 | 69167605 | 69167677 | Lys | TTT | taaggaggga | tgtcctgtgg | 0 | 0 | 81.20 | 63.55 | 17.65 | Both |
| chr20 | 18 | 71857389 | 71857459 | Gly | GCC | ctcagctgga | gcagctgcaa | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| chr20 | 19 | 71858204 | 71858274 | Gly | GCC | gccagctgga | gcctgtctac | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| chr20 | 20 | 85504757 | 85504685 | Met | CAT | cgattgagca | gcccaacgtt | 0 | 0 | 74.51 | 54.15 | 20.36 | Both |
| chr20 | 21 | 71848117 | 71848047 | Gly | GCC | aacagctgga | atgcagtgtt | 0 | 0 | 81.62 | 61.57 | 20.05 | Both |
| chr20 | 22 | 71847406 | 71847336 | Gly | GCC | taacatctgg | acagcagagc | 0 | 0 | 61.01 | 51.02 | 9.99 | Both |
| chr20 | 23 | 71235251 | 71235179 | Met | CAT | tgcaaaggcc | gctgttttgc | 0 | 0 | 78.21 | 55.64 | 22.57 | Both |
| chr20 | 24 | 55659691 | 55659609 | Leu | CAG | acatcaagca | gagcttcgta | 0 | 0 | 75.90 | 46.89 | 29.01 | Both |
| chr20 | 26 | 20606831 | 20606750 | Leu | TAG | gctaacggga | caccccggag | 0 | 0 | 68.14 | 45.54 | 22.60 | Both |
| chr20 | 27 | 10532817 | 10532747 | Gly | GCC | aaaagaaggt | gcacgccctc | 0 | 0 | 69.93 | 53.35 | 16.58 | Both |
| chr20 | 29 | 3315938 | 3315867 | Pro | AGG | cagagtatgt | aagttttggt | 0 | 0 | 75.92 | 53.85 | 22.07 | Both |
| chr20 | 30 | 3313838 | 3313766 | Lys | CTT | ctataaggaa | tatgttttga | 0 | 0 | 80.47 | 57.81 | 22.66 | Both |
| chr20 | 31 | 3297683 | 3297611 | Lys | CTT | tcttgtaacc | agaggttttg | 0 | 0 | 80.47 | 57.81 | 22.66 | Both |
| chr20 | 33 | 625221 | 625151 | Gly | CCC | atagcagacg | gcttctttac | 0 | 0 | 76.98 | 51.05 | 25.93 | Both |
| |
| chrX | 3 | 90049775 | 90049842 | Val | CAC | gcgtcgattt | cttcctacag | 0 | 0 | 55.93 | 39.48 | 16.45 | Eufind |
| chrX | 5 | 16425927 | 16425855 | Val | TAC | ttctcgtagc | tggtcgcgag | 0 | 0 | 74.27 | 53.74 | 20.53 | Both |
| chrX | 6 | 1515399 | 1515326 | Ile | GAT | ggcgtcaggt | taattttagc | 0 | 0 | 67.40 | 48.70 | 18.70 | Both |
| chrX | 7 | 1515000 | 1514927 | Ile | GAT | ggcgtcagga | tggtcttacg | 0 | 0 | 67.40 | 48.70 | 18.70 | Both |
| chrX | 8 | 1514593 | 1514520 | Ile | GAT | gacgtcagga | tagtcttatc | 0 | 0 | 71.70 | 50.01 | 21.69 | Both |
| chrX | 9 | 1509181 | 1509108 | Ile | GAT | ctggtcaggt | tagtctcagg | 0 | 0 | 59.98 | 45.80 | 14.18 | Eufind |
|
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