| Predicted tRNA Secondary Structures |
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Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna12 (1-74) Length: 74 bp
Type: Ala Anticodon: CGC at 35-37 (35-37) Score: 89.12
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCCTGGTTCGCACCCAGGAGGtCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna26 (1-74) Length: 74 bp
Type: Ala Anticodon: GGC at 35-37 (35-37) Score: 84.19
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGTGCGCGGTTGGCATCCGCGAGGtCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna11 (1-90) Length: 90 bp
Type: Ala Anticodon: TGC at 35-37 (35-37) Score: 80.26
Possible intron: 39-53 (39-53)
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGCTTGCAacccacgggcaggatACCGAGAGGtcCCCGGGTTCAAATCCCGGCCGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>......................<<<<<......>>>>>.......<<<<<<<<<<<<.
chr.trna27 (1-75) Length: 75 bp
Type: Arg Anticodon: CCG at 36-38 (36-38) Score: 78.81
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCGTAGGCCTCCGGAGCCTAAGGtCCCGGGTCCGAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna40 (1-91) Length: 91 bp
Type: Arg Anticodon: CCT at 36-38 (36-38) Score: 67.20
Possible intron: 40-55 (40-55)
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTCCTAagcggaggcaagagtgAGCCGAGGGtCGGGGGTCCGAATCCCCCCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<..>>>>.......................<<<<......>>>>>.......<<<<<<<<<<<<.
chr.trna18 (1-75) Length: 75 bp
Type: Arg Anticodon: GCG at 36-38 (36-38) Score: 84.66
Seq: GGACCCGTGGCTCAGCCaGGAcAGAGCGAAGGCCTGCGGAGCCTTAGGtCCCGGGTTCAAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna16 (1-75) Length: 75 bp
Type: Arg Anticodon: TCG at 36-38 (36-38) Score: 81.81
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCGCAGGCCTTCGGAGCCTGTGGtCCCGGGTCCGAATCCCGGCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna36 (1-88) Length: 88 bp
Type: Arg Anticodon: TCT at 36-38 (36-38) Score: 67.13
Possible intron: 40-52 (40-52)
Seq: GGACCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTTCTAacaggccgaagggAGCCGAGGGtCGGGGGTCCGAATCCCCCCGGGTCCG
Str: >>>>>>>..>>>>..........<<<<..>>>>....................<<<<......>>>>>.......<<<<<<<<<<<<.
chr.trna34 (1-90) Length: 90 bp
Type: Asn Anticodon: GTT at 34-36 (34-36) Score: 68.59
Possible intron: 38-54 (38-54)
Seq: GCCGCGGTAGCTCAGCTGGCAGAGCGCTCGGCTGTTAacttctagttgacagagACCGAGCGGtCGACGGTTCGAGTCCGTCCCGCGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna48 (1-75) Length: 75 bp
Type: Asp Anticodon: GTC at 37-39 (37-39) Score: 79.71
Seq: GCCGCAGTAGTCTAGCCcGGTctAGGATGGGGGCCTGTCGAGCCCCTGACCCGGGTTCAAATCCCGGCTGCGGCG
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna42 (1-92) Length: 92 bp
Type: Cys Anticodon: GCA at 35-37 (35-37) Score: 63.41
Possible intron: 39-55 (39-55)
Seq: GCCGGGGTGGCCGAGCGGTctAAGGCGGCGGGCTGCAGtgggtttcaggttggaaACCCGTTATttCGCGGGTTCAAATCCCGCCCCCGGCT
Str: >>>>>>>..>>>...........<<<.>>>>>........................<<<<<......>>>>>.......<<<<<<<<<<<<.
BHB: GCCGGGGTGGCCGAGCGGTCTAAGGCGGC[ACTACCATAGGTAGCGCTAG]GGGCTGCAGTGGGTTTCAGGTTGGAAACCCGTTATTTCGCGGGTTCAAATCCCGCCCCCGGCT
chr.trna13 (1-73) Length: 73 bp
Type: Gln Anticodon: CTG at 35-37 (35-37) Score: 63.97
Seq: AGCCGGGTAGTCTAGCGGCcaAGGATCCAGGGCTCTGGCCCCTGGGACCCCGGTTCGAATCCGGGCCCGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna4 (1-73) Length: 73 bp
Type: Gln Anticodon: TTG at 35-37 (35-37) Score: 64.58
Seq: AGCCGGGTAGTCTAGCGGCcaAGGATCCAGGGCTTTGGCCCCTGGGACCAGGGTTCGAATCCCTGCCCGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna9 (1-75) Length: 75 bp
Type: Glu Anticodon: CTC at 37-39 (37-39) Score: 81.83
Seq: GCCGCGATAGTATAGCCcGGTcaAGTATGCAGGCCTCTCAAGCCTGTGGCCCGGGTTCAAATCCCGGTCGCGGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCGATAGTATAGCCCGGTCA[AGCCGTGGTGCCGAG]AGTATGCAGGCCTCTCAAGCCTGTGGCCCGGGTTCAAATCCCGGTCGCGGCA
chr.trna20 (1-75) Length: 75 bp
Type: Glu Anticodon: TTC at 37-39 (37-39) Score: 82.14
Seq: GCCGCGGTAGTATAGCCcGGCcaAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: GCCGCGGTAGTATAGCCCGGCCA[TGCTCTGCGCCGAG]AGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCA
chr.trna45 (1-75) Length: 75 bp
Type: Gly Anticodon: CCC at 36-38 (36-38) Score: 90.22
Seq: GCGGCCGTAGTCCAGCCtGGTtAGGACGCTGGCCTCCCAAGCCAGAGAtCCCGGGTTCAAATCCCGGCGGTCGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna31 (1-76) Length: 76 bp
Type: Gly Anticodon: GCC at 37-39 (37-39) Score: 83.53
Seq: GCGGCCGTAGTCTAGCCtGGAttAGGACGCCTGCCTGCCACGCAGGAGGtCCCGGGTTCAAATCCCGGCGGTCGCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna17 (1-78) Length: 78 bp
Type: Gly Anticodon: TCC at 36-38 (36-38) Score: 89.15
Seq: GCGGCCGTAGTCTAGCCtGGTtAGGACGCTGGCCTTCCAAGCCAGAAGtCCCGGGTTCAAATCCCGGCGGTCGCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna44 (1-75) Length: 75 bp
Type: His Anticodon: GTG at 36-38 (36-38) Score: 82.78
Seq: GCTCAGGTAGCTCAGCTcGGTtAGAGCGCTGGGCTGTGGACCCAGTGGtCCCGGGTTCAAATCCCGGCCTGAGCC
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna37 (1-88) Length: 88 bp
Type: Ile Anticodon: GAT at 36-38 (36-38) Score: 80.42
Possible intron: 40-52 (40-52)
Seq: GGGCCCGTAGCTTAGCAtGGTtAGAGCGCCCGGCTGATAacttctgtcagagACCGGGAGGtCGAGGGTTCAAATCCCTCCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna39 (1-96) Length: 96 bp
Type: Leu Anticodon: CAA at 36-38 (36-38) Score: 66.61
Possible intron: 40-51 (40-51)
Seq: GCGGGGATGCCCGAGCTGGTccAAGGGGGCGGACTCAAGaccgccagggtgATCCGCTGGCGCAGGCCAtCCGGGGTTCAAATCCCCGTCCCCGCA
Str: >>>>>>>..>>>............<<<.>>>>>...................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna24 (1-100) Length: 100 bp
Type: Leu Anticodon: CAG at 37-39 (37-39) Score: 59.83
Possible intron: 41-55 (41-55)
Seq: GCGGGGGTGCCCGAGCTaGGTcaAAGGGGGTAGGCTCAGGaccattaggtgagacCCCTACTGGAGTAGTCCTgCGCGGGTTCAAATCCCGCCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>......................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna8 (1-85) Length: 85 bp
Type: Leu Anticodon: GAG at 37-39 (37-39) Score: 70.55
Seq: GCGGGGGTGCCCGAGCTaGGCcaAAGGGGGTGGACTGAGGCTCCACTGGAGTAGTCCTgCGCGGGTTCAAATCCCGCCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna47 (1-97) Length: 97 bp
Type: Leu Anticodon: TAA at 37-39 (37-39) Score: 64.41
Possible intron: 41-52 (41-52)
Seq: GCGGGGGTGCCCGAGCCtGGTcaAAGGGGGCGGACTTAAGatcacataggtgATCCGCTGGAGCAGTCCTgCGCGGGTCCAAATCCCGCCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>...................<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna35 (1-85) Length: 85 bp
Type: Leu Anticodon: TAG at 37-39 (37-39) Score: 67.75
Seq: GCGGGGGTGCCCGAGCTaGGCcaAAGGGGGTAGGCTTAGGCCCTACTGGAGTAGTCCTgCGCGGGTTCAAATCCCGCCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna5 (1-92) Length: 92 bp
Type: Lys Anticodon: CTT at 35-37 (35-37) Score: 81.87
Possible intron: 39-53 (39-53)
Seq: GGGCTCGTAGCTTAGCCaGGTAGAGCGACGGGCTCTTAaccacaacgggaggtACCCGTAGGtCCCGGGTTCGAATCCCGGCGAGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna6 (1-74) Length: 74 bp
Type: Lys Anticodon: TTT at 35-37 (35-37) Score: 87.12
Seq: GGGCCCGTAGCTCAGCTaGGTAGAGCGGCGGGCTTTTAACCCGTAGGcCCCGGGTTCGAATCCCGGCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna29 (1-74) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (35-37) Score: 87.94
Seq: GGGCCCGTAGCTCAGCTaGGTAGAGCGCGCGGCTCATAACCGCGTGGtCGAGGGTTCAAATCCCTCCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna43 (1-98) Length: 98 bp
Type: Met Anticodon: CAT at 35-37 (35-37) Score: 72.46
Possible intron: 39-62 (39-62)
Seq: AGCGGCGTAGGCCAGCCtGGTAGGCCGCAGGGCTCATAtatgggtgtaaaacccgttgagaaACCCTGAGGtCCCTGGTTCAAGTCCAGGCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>...............................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna14 (1-91) Length: 91 bp
Type: Met Anticodon: CAT at 36-38 (36-38) Score: 85.84
Possible intron: 40-52 (40-52)
Seq: GCCGCCGTAGCTCAGCCtGGCcAGAGCGCCGGACTCATAcggatgctgggtcATCCGGTCGtCCGGGGTTCAAATCCCCGCGGCGGCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna46 (1-88) Length: 88 bp
Type: Phe Anticodon: GAA at 35-37 (35-37) Score: 73.33
Possible intron: 39-52 (39-52)
Seq: GCCGCCGTAGCTCAGCCcGGGAGAGCACCCGGCTGAAGacttcggtatagagACCGGGTTGtCCGGGGTTCAAGTCCCCGCGGCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna41 (1-76) Length: 76 bp
Type: Pro Anticodon: CGG at 37-39 (37-39) Score: 73.73
Seq: GGGCCCGTAGTCTAGCTtGGAttAGGATGCGACGTTCGGGTCGTCGTGAtCCCGGGTTCAAATCCCGGCGGGCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna38 (1-97) Length: 97 bp
Type: Pro Anticodon: GGG at 37-39 (37-39) Score: 71.44
Possible intron: 41-61 (41-61)
Seq: GGGGCCGTAGTCTAGCTtGGAttAGGATGCCAGCCTGGGGataactccctaaccaccagagCGCTGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna33 (1-76) Length: 76 bp
Type: Pro Anticodon: TGG at 37-39 (37-39) Score: 76.24
Seq: GGGGCCGTCGTCTAGTTtGGTccAGGACGCCAGGCTTGGGCCCTGGTAAtCGGGGGTTCAAATCCCCTCGGCCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna23 (1-109) Length: 109 bp
Type: Ser Anticodon: CGA at 35-37 (35-37) Score: 49.02
Possible intron: 39-62 (39-62)
Seq: GCCGGGGTGCCCGAGCGGAccAAGGGGGTAGGCTCGAGacctttccagcgttaaagcgtgcgACCTACTGTCTCTCCGAGACACGCGGGTTCAAATCCCGCCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>...............................<<<<<.>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna19 (1-97) Length: 97 bp
Type: Ser Anticodon: GCT at 36-38 (36-38) Score: 64.56
Possible intron: 40-51 (40-51)
Seq: GCCGGGATCGCCTAGCCtGGTtAGGGCGGCGGCCTGCTAattagcgtgggcAGCCGTTGGGGGAAAcCCCGCGTGGGTTCAAATCCCACTCCCGGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>...................<<<<<..>>>.....<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna2 (1-96) Length: 96 bp
Type: Ser Anticodon: GGA at 35-37 (35-37) Score: 61.24
Possible intron: 39-50 (39-50)
Seq: GCCGGGGTGCCCGAGCGGAccAAGGGGCTGGCCTGGAGaatgttccggctAGCCAGTAGGGGCAACCCTaCGCGGGTTCAAATCCCGCCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>...................<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna3 (1-96) Length: 96 bp
Type: Ser Anticodon: TGA at 35-37 (35-37) Score: 60.36
Possible intron: 39-50 (39-50)
Seq: GCCGGGGTGCCCGAGCGGAccAAGGGGCTGGCCTTGAGagcttcctggttAGCCAGTAGGGAACTCCCTgCGCGGGTTCAAATCCCGCCCCCGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>...................<<<<<..>>>>..<<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna1 (1-86) Length: 86 bp
Type: Thr Anticodon: CGT at 34-36 (34-36) Score: 80.58
Possible intron: 38-50 (38-50)
Seq: GCCGCTGTAGCTCAGCTGGTAGAGCGCCGGCCTCGTAtccctggagagatAGCCGGTGGtCGCGGGTTCAAATCCCGCCGGCGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna10 (1-87) Length: 87 bp
Type: Thr Anticodon: GGT at 36-38 (36-38) Score: 76.85
Possible intron: 40-51 (40-51)
Seq: GCCGCGGTAGCTCAGCCtGGCtGGAGCGCTGCCCTGGTAaccaacccgggcAGGCAGAGGcCCCGGGTTCAAATCCCGGCCGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>...................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna15 (1-89) Length: 89 bp
Type: Thr Anticodon: TGT at 36-38 (36-38) Score: 83.12
Possible intron: 40-53 (40-53)
Seq: GCCGCTGTAGCTCAGCCtGGCcAGAGCGCCGGCCTTGTAaggtttcccaagccAGCCGGCGGtCGCGGGTTCAAATCCCGCCAGCGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna32 (1-132) Length: 132 bp
Type: Trp Anticodon: CCA at 36-38 (36-38) Score: 71.03
Possible intron: 40-96 (40-96)
Seq: GGGCCCATAGCTCAGCCaGGTtAGAGTGCTGGGCTCCAGatatcagcattgggtctgtcgacccgaaaggggatgaaatatatctggaatggagagACCCAGTGGtCCGGGGTCCGAATCCCCGTGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna22 (1-89) Length: 89 bp
Type: Tyr Anticodon: GTA at 37-39 (37-39) Score: 73.06
Possible intron: 41-53 (41-53)
Seq: CCCACCGTAGCTCAGCCcGGTtcAGAGCGCCCGGCTGTAGataaagggcagttACCGGGTGGtCCGGGGTTCAAGTCCCCGCGGTGGGA
Str: >>>>>>>..>>>>...........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna7 (1-75) Length: 75 bp
Type: Val Anticodon: CAC at 36-38 (36-38) Score: 82.00
Seq: GGACCCGTCGTCTAGCCtGGTtAGGACGCAGCCCTCACACGGCTGAGGtCGAGGGTTCAAATCCCTCCGGGTCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna30 (1-75) Length: 75 bp
Type: Val Anticodon: GAC at 36-38 (36-38) Score: 81.98
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGATGCCGCTCTGACACAGCGGAGGtCCTGGGTTCAAATCCCAGCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna25 (1-75) Length: 75 bp
Type: Val Anticodon: TAC at 36-38 (36-38) Score: 87.26
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGCTGGCCTTACAAGCCAGAGGtCTTGGGTTCAAATCCCAACGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
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