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tRNAscan-SE Analysis of Metallosphaera sedula DSM 5348

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tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 12 1542915 1542988 View Ala CGC tgatggtggt tcctcgctac 0 0 89.12 77.87 11.25   chr 26 2191299 2191226 View Ala GGC atcttatact cttcaccgtt 0 0 84.19 70.80 13.39   chr 11 1538335 1538424 View Ala TGC tgaagtatgt tactatttta 1538373 1538387 80.26 67.29 12.97     chr 28 2181233 2181157 View Arg CCG tggcaaccaa cattgtgtag 0 0 19.92 9.38 10.54   chr 27 2185891 2185817 View Arg CCG ggttatgacg atgtggggga 0 0 78.81 65.17 13.64   chr 40 1581275 1581185 View Arg CCT ttagttgtag cttttcactt 1581236 1581221 67.20 57.88 9.32   chr 18 1853340 1853414 View Arg GCG attaggaatt cctattccgt 0 0 84.66 70.24 14.42   chr 16 1653273 1653347 View Arg TCG atcttccctt cttccttctc 0 0 81.81 70.10 11.71   chr 36 1806889 1806802 View Arg TCT ctagatgtag cattcaaatt 1806850 1806838 67.13 57.81 9.32     chr 34 2052675 2052586 View Asn GTT taatgcgcgt ctcttgtttt 2052638 2052622 68.59 50.07 18.52     chr 48 56616 56542 View Asp GTC atattaatat cctttcattt 0 0 79.71 61.42 18.29     chr 42 166445 166334 View Cys GCA ctctaatacc ctcaagttta 78 94 63.41 48.97 14.44     chr 13 1596828 1596900 View Gln CTG tactttaatt ccttctttga 0 0 63.97 44.22 19.75   chr 4 54195 54267 View Gln TTG attcctaatt cctcctcgtg 0 0 64.58 45.12 19.46     chr 9 773416 773505 View Glu CTC tattaattat ctccttttag 0 0 81.83 66.18 15.65   chr 20 2096337 2096425 View Glu TTC tattttcatt ctaattttac 0 0 82.14 67.81 14.33     chr 45 100476 100402 View Gly CCC tatttagagt ctaaattctt 0 0 90.22 78.76 11.46   chr 31 2079476 2079401 View Gly GCC ctcataactt cctgttctcc 0 0 83.53 72.74 10.79   chr 17 1830495 1830572 View Gly TCC caatccatgt ttcaggatcc 0 0 89.15 78.90 10.25     chr 44 115550 115476 View His GTG gtctatcgtg cttgtttacg 0 0 82.78 65.08 17.70     chr 37 1735237 1735150 View Ile GAT aagcctcgag ccttcctgtg 1735198 1735186 80.42 67.51 12.91     chr 21 2112041 2112107 View Leu CAA gattctgata ttgattttat 0 0 16.54 17.92 -1.38   chr 39 1701534 1701439 View Leu CAA gtataattgt taacccgcga 1701495 1701484 66.61 42.78 23.83   chr 24 2154234 2154333 View Leu CAG agataaatgt tgatatatac 2154274 2154288 59.83 33.32 26.51   chr 8 684543 684627 View Leu GAG atcagtaagt ttccttaaaa 0 0 70.55 46.53 24.02   chr 47 58865 58769 View Leu TAA gtttatttct cttcatcttg 58825 58814 64.41 42.05 22.36   chr 35 1961505 1961421 View Leu TAG taaatgttgt tgcctctcgc 0 0 67.75 40.30 27.45     chr 5 141492 141583 View Lys CTT gctttaccct cacttatagt 141530 141544 81.87 68.61 13.26   chr 6 142554 142627 View Lys TTT tgtatgacgg ctacatcccc 0 0 87.12 77.26 9.86     chr 29 2158561 2158488 View Met CAT agggtgaagt cgaaatagca 0 0 87.94 72.03 15.91   chr 43 117554 117457 View Met CAT agggtaaaac cttcccctac 117516 117493 72.46 48.67 23.79   chr 14 1598318 1598408 View Met CAT gttataacgt tctccatgtg 1598357 1598369 85.84 73.98 11.86     chr 46 99766 99679 View Phe GAA gtagtttcgt tttcttgaat 99728 99715 73.33 59.14 14.19     chr 41 1545590 1545515 View Pro CGG cttgagacga tccgtctccg 0 0 73.73 56.34 17.39   chr 38 1724960 1724864 View Pro GGG cataagtaga ccttcacaat 1724920 1724900 71.44 57.88 13.56   chr 33 2052864 2052789 View Pro TGG gaagttgagc tcttgacggc 0 0 76.24 61.34 14.90     chr 23 2154080 2154188 View Ser CGA atctaattat cattaaccgt 2154118 2154141 49.02 29.04 19.98   chr 19 1960401 1960497 View Ser GCT cttagatatt cctcattacc 1960440 1960451 64.56 42.25 22.31   chr 2 40090 40185 View Ser GGA cttcaaaggt cgttaggtga 40128 40139 61.24 36.59 24.65   chr 3 53455 53550 View Ser TGA atagttaagt tctggaatcc 53493 53504 60.36 36.79 23.57     chr 1 16975 17060 View Thr CGT aattttccat cattggtgat 17012 17024 80.58 71.20 9.38   chr 10 1535617 1535703 View Thr GGT acttatctgt cctcacatat 1535656 1535667 76.85 63.45 13.40   chr 15 1598625 1598713 View Thr TGT gttataacgt tctagatact 1598664 1598677 83.12 70.93 12.19     chr 32 2077669 2077538 View Trp CCA gatcggtaat ttaaaatttc 2077630 2077574 71.03 56.22 14.81     chr 22 2152523 2152611 View Tyr GTA tgattcatgt ctctttaggt 2152563 2152575 73.06 52.33 20.73     chr 7 195938 196012 View Val CAC agtgtgctga tctttttacg 0 0 82.00 65.85 16.15   chr 30 2154485 2154411 View Val GAC tagaacttga tacttccttg 0 0 81.98 65.07 16.91   chr 25 2180910 2180984 View Val TAC cgtctacgtt cttttaagat 0 0 87.26 72.40 14.86   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.