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| tRNAscan-SE Run Options & Statistics |
tRNAscan-SE v.1.23 (April 2002) scan results (on host lowedev.cse.ucsc.edu)
Started: Sat Jan 24 23:03:13 PST 2009
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Search Mode: Eukaryotic
Searching with: tRNAscan + EufindtRNA -> Cove
Covariance model: TRNA2-euk.cm
tRNAscan parameters: Strict
EufindtRNA parameters: Relaxed (Int Cutoff= -32.1)
Reporting HMM/2' structure score breakdown
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read: 36
Seqs w/at least 1 hit: 35
Bases read: 32824377 (x2 for both strands)
Bases in tRNAs: 21139
tRNAs predicted: 209
Av. tRNA length: 101
Script CPU time: 3.97 s
Scan CPU time: 22.90 s
Scan speed: 2866.8 Kbp/sec
First pass search(es) ended: Sat Jan 24 23:03:41 PST 2009
Cove Stats:
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Candidate tRNAs read: 209
Cove-confirmed tRNAs: 83
Bases scanned by covels: 24065
% seq scanned by covels: 0.0 %
Script CPU time: 0.52 s
Cove CPU time: 24.52 s
Scan speed: 981.4 bp/sec
Cove analysis of tRNAs ended: Sat Jan 24 23:04:11 PST 2009
Summary
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Overall scan speed: 1264664.9 bp/sec
tRNAs decoding Standard 20 AA: 82
Selenocysteine tRNAs (TCA): 0
Possible suppressor tRNAs (CTA,TTA): 0
tRNAs with undetermined/unknown isotypes: 0
Predicted pseudogenes: 1
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Total tRNAs: 83
tRNAs with introns: 3
| Tyr-GTA: 3 |
Isotype / Anticodon Counts:
Ala : 5 AGC: 2 GGC: CGC: 2 TGC: 1
Gly : 6 ACC: GCC: 4 CCC: 1 TCC: 1
Pro : 5 AGG: 2 GGG: CGG: 2 TGG: 1
Thr : 6 AGT: 3 GGT: CGT: 2 TGT: 1
Val : 5 AAC: 2 GAC: CAC: 2 TAC: 1
Ser : 5 AGA: 1 GGA: CGA: 1 TGA: 1 ACT: GCT: 2
Arg : 8 ACG: 4 GCG: CCG: 1 TCG: 1 CCT: 1 TCT: 1
Leu : 8 AAG: 3 GAG: CAG: 2 TAG: 1 CAA: 1 TAA: 1
Phe : 2 AAA: GAA: 2
Asn : 3 ATT: GTT: 3
Lys : 4 CTT: 3 TTT: 1
Asp : 3 ATC: GTC: 3
Glu : 3 CTC: 2 TTC: 1
His : 2 ATG: GTG: 2
Gln : 4 CTG: 3 TTG: 1
Ile : 4 AAT: 3 GAT: TAT: 1
Met : 4 CAT: 4
Tyr : 3 ATA: GTA: 3
Supres: 0 CTA: TTA:
Cys : 1 ACA: GCA: 1
Trp : 1 CCA: 1
SelCys: 0 TCA:
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