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tRNAscan-SE Analysis of Leishmania major (Version 5.0)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr17 2 344275 344347 Ala AGC atttttctgt acttttgtgt 0 0 60.04 34.84 25.20 Both chr31 1 203939 204011 Ala AGC ttaccgcgtc actttttcac 0 0 60.04 34.84 25.20 Both chr11 1 157119 157190 Ala CGC agcgttcaat cattttcgtc 0 0 70.10 44.19 25.91 Both chr11 6 162800 162729 Ala CGC agcgttcaat catttttccc 0 0 70.10 44.19 25.91 Both chr33 1 106939 107010 Ala TGC ccgttatcgt cttttttcct 0 0 68.42 42.69 25.73 Both   chr11 4 381490 381561 Arg ACG acgcgtgcat acttttctgg 0 0 70.89 50.61 20.28 Both chr23 8 225817 225746 Arg ACG gtgttcacgt ttttcttttg 0 0 70.89 50.61 20.28 Both chr5 1 359954 360025 Arg ACG ccaccaccaa ttttttcgtc 0 0 70.89 50.61 20.28 Both chr7 1 381478 381407 Arg ACG gtggcacgaa tttttccggc 0 0 70.89 50.61 20.28 Both chr9 5 418949 419020 Arg CCG ctggctcagc cattttccag 0 0 65.42 46.04 19.38 Both chr33 4 106730 106658 Arg CCT cattttcacc cggtttttga 0 0 78.04 60.39 17.65 Both chr23 2 226329 226400 Arg TCG gtgaagcact catttttcta 0 0 73.56 54.29 19.27 Both chr33 3 106862 106790 Arg TCT cttttatggt cttttgatag 0 0 75.36 57.87 17.49 Both   chr10 2 533396 533324 Asn GTT tttcaacaga tttttccggc 0 0 79.10 53.10 26.00 Both chr34 5 1535020 1535092 Asn GTT aatccacgaa cttttcttta 0 0 79.10 53.10 26.00 Both chr34 8 1534525 1534453 Asn GTT taaccacgaa cttttcgccg 0 0 79.10 53.10 26.00 Both   chr15 1 322953 323024 Asp GTC tggctttcag cttttcctat 0 0 78.09 55.59 22.50 Both chr17 3 344055 343984 Asp GTC tcccactgag ctttttgccc 0 0 78.09 55.59 22.50 Both chr24 5 681062 680991 Asp GTC agtctctcag gtttttcctt 0 0 78.09 55.59 22.50 Both   chr36 5 2469004 2469075 Cys GCA acggttcatc tccttttccc 0 0 75.22 55.10 20.12 Both   chr16 1 455507 455436 Gln CTG tcccacgagc actttttccc 0 0 70.34 47.09 23.25 Both chr24 2 621500 621571 Gln CTG tctccaatgc actttttccc 0 0 70.34 47.09 23.25 Both chr36 9 1607734 1607663 Gln CTG aagagcaggt tctttttcca 0 0 70.34 47.09 23.25 Both chr23 9 225498 225427 Gln TTG tttatgttgt gtttttgggc 0 0 81.95 57.44 24.51 Both   chr15 2 323136 323065 Glu CTC cgagtatcat cttttccgcc 0 0 69.92 47.94 21.98 Both chr31 5 494829 494758 Glu CTC aaccttcagt aattttttcc 0 0 69.92 47.94 21.98 Both chr9 8 418562 418491 Glu TTC aattcatagg tgtcttttcg 0 0 65.42 49.50 15.92 Both   chr11 2 157252 157322 Gly CCC cgattccaaa cacttttccc 0 0 74.97 46.76 28.21 Both chr10 3 533267 533197 Gly GCC gtgtggtcac aagttttttc 0 0 75.20 60.30 14.90 Both chr31 2 494642 494712 Gly GCC cggagccaca aacgttttcc 0 0 75.20 60.30 14.90 Both chr36 10 1033437 1033367 Gly GCC cgtttcagaa aagttttttg 0 0 75.20 60.30 14.90 Both chr36 3 1032519 1032589 Gly GCC tcataccgaa ggcttttctc 0 0 75.20 60.30 14.90 Both chr23 5 226897 226826 Gly TCC cctcttcacc ctgttttccc 0 0 69.57 47.64 21.93 Both   chr9 4 405864 405934 His GTG agtttgcggt cacttttttc 0 0 59.58 34.81 24.77 Both chr9 6 419087 419157 His GTG taacagcaac cacttttttt 0 0 59.58 34.81 24.77 Both   chr24 3 621952 622025 Ile AAT tgtccaagta ctttttccaa 0 0 80.15 58.55 21.60 Both chr24 4 623347 623420 Ile AAT ccattacacg ctttttctaa 0 0 80.15 58.55 21.60 Both chr34 1 470433 470506 Ile AAT ctaagctgca ctttttttca 0 0 80.15 58.55 21.60 Both chr23 1 225169 225242 Ile TAT tacacaccac gccgctcttt 0 0 81.51 62.89 18.62 Both   chr11 3 162874 162955 Leu AAG ggccgctcaa ctttttctgc 0 0 66.27 37.13 29.14 Both chr11 7 157045 156964 Leu AAG ggccgctcaa ctttttctgc 0 0 66.27 37.13 29.14 Both chr36 8 2469947 2469866 Leu AAG ccttttgcaa cttttcttcc 0 0 66.27 37.13 29.14 Both chr29 2 819759 819678 Leu CAA cgagaactag attttttccc 0 0 73.13 48.89 24.24 Both chr23 7 226124 226042 Leu CAG gatgaatcga accttttcta 0 0 72.97 41.85 31.12 Both chr9 2 277210 277292 Leu CAG attaccctga cactttttcc 0 0 72.97 41.85 31.12 Both chr24 6 621866 621785 Leu TAA tgatgagagt aaatgttttc 0 0 56.87 25.51 31.36 Both chr34 9 470755 470676 Leu TAG tttgtaggag acccttttcc 0 0 73.76 50.46 23.30 Both   chr10 1 533082 533154 Lys CTT taccaccgaa ctttttcaca 0 0 84.21 58.37 25.84 Both chr21 3 443143 443215 Lys CTT gtgcgtcgta ctttttcgta 0 0 84.21 58.37 25.84 Both chr3 1 259317 259389 Lys CTT accttgcgaa cttttccccc 0 0 84.21 58.37 25.84 Both chr23 3 226715 226787 Lys TTT ccggcgtaaa attttccctt 0 0 78.85 55.83 23.02 Both   chr11 5 381413 381341 Met CAT tcgtagccgt aactttttct 0 0 73.12 53.18 19.94 Both chr34 2 470568 470640 Met CAT aacgacatga tccctttttt 0 0 73.12 53.18 19.94 Both chr36 7 2470081 2470010 Met CAT ggtgggaaga tacgttttcg 0 0 75.16 49.51 25.65 Both chr9 1 277080 277151 Met CAT aatttgtagc tactttttgc 0 0 75.16 49.51 25.65 Both   chr31 3 1315562 1315634 Phe GAA agtttgctaa tactttattt 0 0 86.47 66.04 20.43 Both chr9 9 406187 406115 Phe GAA aagcatcgca taccttttct 0 0 86.47 66.04 20.43 Both   chr21 1 442784 442855 Pro AGG ggaattcatc ttttccgcca 0 0 71.70 46.89 24.81 Both chr36 4 1033511 1033582 Pro AGG gttaacaaac tttttcctcc 0 0 71.70 46.89 24.81 Both chr24 1 205318 205389 Pro CGG cgggtaccgc attttttttg 0 0 74.75 48.66 26.09 Both chr34 4 1534885 1534956 Pro CGG cggacactgt ttttccctct 0 0 74.75 48.66 26.09 Both chr36 6 2470154 2470225 Pro TGG cctgtaacga ctttttccga 0 0 71.29 42.95 28.34 Both   chr33 2 600715 600643 Pseudo CTT tctggttctt tttgtttttc 0 0 35.04 40.77 -5.73 Both   chr31 4 1315767 1315687 Ser AGA acacacagga cttttcgcag 0 0 72.93 40.48 32.45 Both chr29 1 819898 819818 Ser CGA caacgtcgtg gtttttcaac 0 0 72.54 40.18 32.36 Both chr17 1 344133 344213 Ser GCT acgacctgga acacttttcc 0 0 75.67 46.67 29.00 Both chr21 4 160152 160072 Ser GCT ctgaagtgta tactttttcc 0 0 77.56 47.09 30.47 Both chr34 3 470830 470910 Ser TGA agcacgtata tgttttttcg 0 0 72.53 40.19 32.34 Both   chr36 1 492633 492704 Thr AGT gagagatggt ctcttttccc 0 0 71.69 43.44 28.25 Both chr36 11 1033304 1033233 Thr AGT gcgttgcagt aacttttttg 0 0 71.69 43.44 28.25 Both chr36 12 491808 491737 Thr AGT gagagatggt ctcttttccc 0 0 71.69 43.44 28.25 Both chr30 1 798305 798234 Thr CGT atctgcagcc tgcctttttc 0 0 73.34 45.33 28.01 Both chr34 6 1534803 1534732 Thr CGT gtgtcccgtc gtctcctttt 0 0 73.34 45.33 28.01 Both chr23 6 226256 226185 Thr TGT tgagaaagca tttttggttt 0 0 74.23 48.98 25.25 Both   chr23 4 226973 227044 Trp CCA tccatgcatc tttttttttg 0 0 70.81 55.91 14.90 Both   chr34 7 1534667 1534584 Tyr GTA gtacgaacaa agcttttcct 1534630 1534620 69.74 45.19 24.55 Both chr36 13 491656 491573 Tyr GTA cagcggttga cacctttttc 491619 491609 69.10 44.55 24.55 Both chr36 2 492788 492871 Tyr GTA cagcggttga cacctttttc 492825 492835 69.10 44.55 24.55 Both   chr21 2 443007 443080 Val AAC tcaccagcga cttttcttgc 0 0 68.41 43.36 25.05 Both chr34 10 470199 470126 Val AAC ggtttcccaa cttttttacc 0 0 68.41 43.36 25.05 Both chr9 3 405537 405609 Val CAC ctcacgacat actttttccc 0 0 70.56 55.18 15.38 Both chr9 7 418874 418802 Val CAC ctgatgacat acttttttcc 0 0 70.56 55.18 15.38 Both chr23 10 225359 225287 Val TAC tttgtggtga tttttctctg 0 0 72.15 49.33 22.82 Both

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.