tRNAscan-SE Analysis of the Legionella pneumophila Lens Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna25 (2061552-2061477)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (2061519-2061517)	Score: 83.68
Seq: GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (410434-410509)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (410467-410469)	Score: 88.89
Seq: GGGGTCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAGGAGTTCGATCCTCCTCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (661321-661396)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (661354-661356)	Score: 88.89
Seq: GGGGTCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAGGAGTTCGATCCTCCTCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1593193-1593117)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1593159-1593157)	Score: 85.83
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTATCTGGCTACGAACCAGGGGGtCGGAGGTTCGAATCCTTCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (1377913-1377837)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (1377879-1377877)	Score: 80.71
Seq: GTCCCGGTGGCACAGATGGAtAGCGCAGCCCCCTCCTAAGGGGCAGGtCGCAGGTTCGAATCCTGCCCGGGACGCCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (2275853-2275929)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (2275887-2275889)	Score: 87.32
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGTACTTGGCTTCGAACCAAGGTGtCGGGGGTTCGAGTCCCTCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (2044990-2044914)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (2044956-2044954)	Score: 86.27
Seq: GCGCCCGTAGCTCATCTGGAtAGAGCATCGGCCTTCTAAGCCGAGGGtAGCAGGTTCGAATCCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna43 (83461-83386)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (83428-83426)	Score: 89.51
Seq: TCCCCGGTAGCTCAGTCGGTAGAGCGGATGACTGTTAATCATTAGGtCACAAGTTCGAGTCTTGTCCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (2037898-2037822)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2037864-2037862)	Score: 89.49
Seq: GGAGTGGTAGTTCAGTTGGTcAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGCCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (2526352-2526279)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (2526320-2526318)	Score: 63.55
Seq: GGCTGTGTGGCAGAGTGGTCATGCAGCGGCCTGCAAAGCCGTGTACGCCGGTTCGATTCCGGCCTCAGCCTCCA
Str: >>>>>.>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<.<<<<<....

chr.trna41 (638028-637954)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (637996-637994)	Score: 68.05
Seq: AGGGGTGTCGCCAAGCGGTAAGGCACAGGGTTTTGATCCCTGCATaCCTAGGTTCGAATCCTAGCACCCCTGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (2061438-2061363)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2061404-2061402)	Score: 58.59
Seq: GTCCCCATCGTCTAGAGGCctAGGACATCGCCCTTTCACGGCGGTAACGGGGGTTCGAATCCCCCTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (2061307-2061232)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2061273-2061271)	Score: 58.59
Seq: GTCCCCATCGTCTAGAGGCctAGGACATCGCCCTTTCACGGCGGTAACGGGGGTTCGAATCCCCCTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (647332-647405)	Length: 74 bp
Type: Gly	Anticodon: CCC at 33-35 (647364-647366)	Score: 73.39
Seq: GCGGGTGTAGTTCAATGGCAGAACCTCAGCTTCCCAAGCTGATGGCGTGGGTTCGATTCCCATCACCCGCTCAA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (2526488-2526413)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (2526455-2526453)	Score: 93.55
Seq: GCGGGAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (414155-414228)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (414187-414189)	Score: 82.65
Seq: GCGGGTGTAGTTCAATGGTAGAACTTCAGCCTTCCAAGCTGATAGCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (2044752-2044677)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (2044719-2044717)	Score: 79.33
Seq: GTGAGCGTAGCTCAGTTGGTAGAGCCCCGGGTTGTGATCCCGGTTGtCGTGGGTTCGAGTCCCATCGTTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (3046550-3046474)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (3046516-3046514)	Score: 95.81
Seq: GGGTCTGTAGATCAGTTGGTtAGATCGCACCCCTGATAAGGGTGAGGtCGGTGGTTCAAGTCCACCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (941749-941663)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (941715-941713)	Score: 76.90
Seq: GCCGGGGTGGCGGAATTGGTaGACGCGCCGGATTCAAAATCCGGTGGTGGTGACACCGTGTGGGTTCGAGTCCCACCCTCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna15 (3310634-3310720)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (3310668-3310670)	Score: 69.14
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCTAGCTTCAGGTGCTAGTGGGGGCAACCCCGTGGAGGTTCGAGTCCTCTTCTCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna16 (3087153-3087069)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (3087119-3087117)	Score: 64.21
Seq: GCCGAAGTGGTGAAATTGGTaGACACGCTGTCTTGAGGGGGCGGTGGCGCAAGCCGTGCCGGTTCGAGTCCGGCCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna23 (2526261-2526175)	Length: 87 bp
Type: Leu	Anticodon: TAA at 35-37 (2526227-2526225)	Score: 75.76
Seq: GCCCAGGTGGCGAAACAGGTaGACGCAAGGGACTTAAAATCCCTCGGTGGTAACACCATGCCGGTTCGATTCCGGCCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna31 (2044586-2044502)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (2044552-2044550)	Score: 71.89
Seq: GCGAAAGTGGCGGAATTGGTaGACGCACTGGATTTAGGTTCCAGCGGGGCGaCCCGTGAGAGTTCGAGTCTCTCCTTTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>><.<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna24 (2380590-2380518)	Length: 73 bp
Type: Lys	Anticodon: CTT at 34-36 (2380557-2380555)	Score: 85.35
Seq: GGGCCGTTAGCTCAGTTGGTAGAGCAGGAGACTCTTAATCTCAGGGtCATAGGTTCGAATCCTATACGGCCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chr.trna11 (2275586-2275661)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (2275619-2275621)	Score: 88.81
Seq: GGGCCGTTAGCTCAGGTGGTAGAGCAGGAGGCTTTTAACCTCTGTGtCATAGGTTCGAATCCTATACGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (2275717-2275792)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (2275750-2275752)	Score: 88.81
Seq: GGGCCGTTAGCTCAGGTGGTAGAGCAGGAGGCTTTTAACCTCTGTGtCATAGGTTCGAATCCTATACGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (3072176-3072100)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (3072142-3072140)	Score: 84.63
Seq: CGCGGGGTGGAGCAGCCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna36 (1434248-1434172)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1434214-1434212)	Score: 93.63
Seq: GGCTATGTAGCTCAGCCGGTtAGAGCGCGGCACTCATAATGCTGAGGtCGGTGGTTCGAGTCCACCCATAGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (2603632-2603708)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2603666-2603668)	Score: 94.81
Seq: GGGCCCATAGCTCAGTTGGTcAGAGCAGCGGACTCATAATCCGTTGGtCCTAGGTTCAAGTCCTAGTGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (2120942-2121017)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (2120975-2120977)	Score: 90.90
Seq: GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCAGTTCGATTCTGCCTCTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (617689-617613)	Length: 77 bp
Type: Pro	Anticodon: CGG at 35-37 (617655-617653)	Score: 86.71
Seq: CGGAGTGTAGCTCAGATtGGTAGAGCACTGCCTTCGGGAGGCAGGGGtCGCAGGTTCAATTCCTGTCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (2849583-2849507)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (2849549-2849547)	Score: 79.71
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACTAGCATGGGGTGCTAGTGGtCGAAGGTTCAAATCCTTCCGTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (2045072-2044996)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (2045038-2045036)	Score: 85.59
Seq: CGGGGTGTAGCGCAGTCtGGTAGCGCGCCTGCTTTGGGAGCAGGATGtCGGGGGTTCAAATCCCTCCTCCCCGACCA
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<....

chr.trna34 (1593289-1593200)	Length: 90 bp
Type: Ser	Anticodon: GCT at 35-37 (1593255-1593253)	Score: 77.22
Seq: GGAGAGATGGCCGAGTGGTcgAAGGCGCTCCCCTGCTAAGGGAGTATGGGAGAAATCCCATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna39 (1025559-1025472)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (1025525-1025523)	Score: 72.38
Seq: GGAGAGATGGCCGAGCGGTcgAAGGCGCACGCCTGGAAAGTGTGTATACGGCAACGTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna38 (1335798-1335711)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (1335764-1335762)	Score: 62.37
Seq: GGAGAGATGGCAGAGCGGTcgATTGCGGCGGTCTTGAAAACCGTTGAAGGGCAACCTTCCCAGGGTTCGAATCCCTGTCTCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna9 (1134589-1134661)	Length: 73 bp
Type: Thr	Anticodon: CGT at 34-36 (1134622-1134624)	Score: 80.63
Seq: GCCGTTGTAGCTCAGTTGGTAGAGCAATTGATTCGTAATCAAGAGGtCGGAGGTTCGACTCCTCTCAGCGGCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chr.trna5 (414281-414356)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (414314-414316)	Score: 90.41
Seq: GCCCACATAGCTCAGGCGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCGTTGGTTCGAGTCCAGTTGTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (413902-413977)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (413935-413937)	Score: 94.56
Seq: GCTGGCGTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGtCCCGGGTTCGATTCCTGGTGCCAGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (415641-415716)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (415674-415676)	Score: 82.40
Seq: AGGCCAGTAGCTCAATTGGCAGAGTGGCGGTCTCCAAAACCGCAGGtTGGGGGTTCGATTCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (414050-414134)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (414084-414086)	Score: 73.58
Seq: GGAGGGGTTCCCGAGCGGTcaAAGGGATCAGACTGTAAATCTGACGGCTCAGCCTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna19 (3014520-3014446)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (3014488-3014486)	Score: 86.87
Seq: AGGCACGTAGCTCAGTGGTAGAGCACCACCTTGACATGGTGGTGGtCGGTGGTTCGATCCCACTCGTGCCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (2037980-2037905)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2037947-2037945)	Score: 93.01
Seq: GGGTGCTTAGCTCAGCTGGGAGAGCATCGCCCTTACAAGGCGAGGGtCGTAGGTTCGATCCCTACAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.