tRNAscan-SE Analysis of the Legionella pneumophila Lens Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	25	2061552	2061477	Ala	GGC	0	0	83.68	67.19	16.49	Both

chr	1	410434	410509	Ala	TGC	0	0	88.89	71.84	17.05	Both
chr	8	661321	661396	Ala	TGC	0	0	88.89	71.84	17.05	Both

chr	35	1593193	1593117	Arg	ACG	0	0	85.83	70.82	15.01	Both

chr	37	1377913	1377837	Arg	CCT	0	0	80.71	55.74	24.97	Both

chr	13	2275853	2275929	Arg	TCG	0	0	87.32	65.86	21.46	Both

chr	29	2044990	2044914	Arg	TCT	0	0	86.27	66.68	19.59	Both

chr	43	83461	83386	Asn	GTT	0	0	89.51	62.55	26.96	Both

chr	33	2037898	2037822	Asp	GTC	0	0	89.49	68.59	20.90	Both

chr	22	2526352	2526279	Cys	GCA	0	0	63.55	44.08	19.47	Both

chr	41	638028	637954	Gln	TTG	0	0	68.05	38.42	29.63	Both

chr	26	2061438	2061363	Glu	TTC	0	0	58.59	34.21	24.38	Both
chr	27	2061307	2061232	Glu	TTC	0	0	58.59	34.21	24.38	Both

chr	7	647332	647405	Gly	CCC	0	0	73.39	51.80	21.59	Both

chr	21	2526488	2526413	Gly	GCC	0	0	93.55	68.11	25.44	Both

chr	4	414155	414228	Gly	TCC	0	0	82.65	61.06	21.59	Both

chr	30	2044752	2044677	His	GTG	0	0	79.33	58.20	21.13	Both

chr	18	3046550	3046474	Ile	GAT	0	0	95.81	67.73	28.08	Both

chr	40	941749	941663	Leu	CAA	0	0	76.90	52.59	24.31	Both

chr	15	3310634	3310720	Leu	CAG	0	0	69.14	40.13	29.01	Both

chr	16	3087153	3087069	Leu	GAG	0	0	64.21	39.65	24.56	Both

chr	23	2526261	2526175	Leu	TAA	0	0	75.76	41.34	34.42	Both

chr	31	2044586	2044502	Leu	TAG	0	0	71.89	39.51	32.38	Both

chr	24	2380590	2380518	Lys	CTT	0	0	85.35	63.20	22.15	Both

chr	11	2275586	2275661	Lys	TTT	0	0	88.81	64.15	24.66	Both
chr	12	2275717	2275792	Lys	TTT	0	0	88.81	64.15	24.66	Both

chr	17	3072176	3072100	Met	CAT	0	0	84.63	61.90	22.73	Both
chr	36	1434248	1434172	Met	CAT	0	0	93.63	70.16	23.47	Both
chr	14	2603632	2603708	Met	CAT	0	0	94.81	71.94	22.87	Both

chr	10	2120942	2121017	Phe	GAA	0	0	90.90	63.87	27.03	Both

chr	42	617689	617613	Pro	CGG	0	0	86.71	62.27	24.44	Both

chr	20	2849583	2849507	Pro	GGG	0	0	79.71	59.22	20.49	Both

chr	28	2045072	2044996	Pro	TGG	0	0	85.59	71.91	13.68	Both

chr	34	1593289	1593200	Ser	GCT	0	0	77.22	43.70	33.52	Both

chr	39	1025559	1025472	Ser	GGA	0	0	72.38	42.19	30.19	Both

chr	38	1335798	1335711	Ser	TGA	0	0	62.37	24.76	37.61	Both

chr	9	1134589	1134661	Thr	CGT	0	0	80.63	68.20	12.43	Both

chr	5	414281	414356	Thr	GGT	0	0	90.41	68.39	22.02	Both

chr	2	413902	413977	Thr	TGT	0	0	94.56	75.92	18.64	Both

chr	6	415641	415716	Trp	CCA	0	0	82.40	58.85	23.55	Both

chr	3	414050	414134	Tyr	GTA	0	0	73.58	43.10	30.48	Both

chr	19	3014520	3014446	Val	GAC	0	0	86.87	62.28	24.59	Both

chr	32	2037980	2037905	Val	TAC	0	0	93.01	68.93	24.08	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.