tRNAscan-SE Analysis of the Legionella pneumophila Lens Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCGGCGGTTCGATCCCGCCTAGCTCCACCA chr.trna25-AlaGGC Sc: 83.68  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGG...........GtCAGGAGTTCGATCCTCCTCGGCTCCACCA chr.trna8-AlaTGC Sc: 88.89  
GGGGTCGTAGCTCAGCTGGGAGAGCACCTGCCTTGCACGCAGGGG...........GtCAGGAGTTCGATCCTCCTCGGCTCCACCA chr.trna1-AlaTGC Sc: 88.89  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAGTTGGAtAGAGTATCTGGCTACGAACCAGGGG...........GtCGGAGGTTCGAATCCTTCCGGGCGCGCCA chr.trna35-ArgACG Sc: 85.83  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCTCGTAGCTCAGCTGGAtAGAGTACTTGGCTTCGAACCAAGGT...........GtCGGGGGTTCGAGTCCCTCCGAGCGCGCCA chr.trna13-ArgTCG Sc: 87.32  

>>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCCCGGTGGCACAGATGGAtAGCGCAGCCCCCTCCTAAGGGGCAG...........GtCGCAGGTTCGAATCCTGCCCGGGACGCCA chr.trna37-ArgCCT Sc: 80.71  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCATCTGGAtAGAGCATCGGCCTTCTAAGCCGAGG...........GtAGCAGGTTCGAATCCTGCCGGGCGCGCCA chr.trna29-ArgTCT Sc: 86.27  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCGGTAGCTCAGTCGGTAGAGCGGATGACTGTTAATCATTAG...........GtCACAAGTTCGAGTCTTGTCCGGGGAGCCA chr.trna43-AsnGTT Sc: 89.51  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGTGGTAGTTCAGTTGGTcAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCACTCCGCCA chr.trna33-AspGTC Sc: 89.49  



Cys tRNAs



>>>>>.>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<.<<<<<....
GGCTGTGTGGCAGAGTGGTC.ATGCAGCGGCCTGCAAAGCCGTGT...........ACGCCGGTTCGATTCCGGCCTCAGCCTCCA chr.trna22-CysGCA Sc: 63.55  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTGTCGCCAAGCGGTA.AGGCACAGGGTTTTGATCCCTGCA...........TaCCTAGGTTCGAATCCTAGCACCCCTGCCA chr.trna41-GlnTTG Sc: 68.05  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACGGGGGTTCGAATCCCCCTGGGGACGCCA chr.trna27-GluTTC Sc: 58.59  
GTCCCCATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACGGGGGTTCGAATCCCCCTGGGGACGCCA chr.trna26-GluTTC Sc: 58.59  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGTA.GAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA chr.trna21-GlyGCC Sc: 93.55  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGTTCAAT.GGCA.GAACCTCAGCTTCCCAAGCTGATG...........G.CGTGGGTTCGATTCCCATCACCCGCTCAA chr.trna7-GlyCCC Sc: 73.39  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGTTCAAT.GGTA.GAACTTCAGCCTTCCAAGCTGATA...........G.CGTGGGTTCGATTCCCATCACCCGCTCCA chr.trna4-GlyTCC Sc: 82.65  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGAGCGTAGCTCAGTTGGTAGAGCCCCGGGTTGTGATCCCGGTT...........GtCGTGGGTTCGAGTCCCATCGTTCACCCCA chr.trna30-HisGTG Sc: 79.33  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGATCAGTTGGTtAGATCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACCCAGACCCACCA chr.trna18-IleGAT Sc: 95.81  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>...............<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGTGAAATTGGTaGACACGCTGTCTTGAGGGGGCGGT.GGC...GCAA........GCCGTGCCGGTTCGAGTCCGGC.CTTCGGCACCA chr.trna16-LeuGAG Sc: 64.21  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>............<.<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAGGTGGTGGAATTGGTaGACACGCTAGCTTCAGGTGCTAGT.GGGG..GCAA......C.CCCGTGGAGGTTCGAGTCCTCT.TCTCGGTACCA chr.trna15-LeuCAG Sc: 69.14  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>............<.<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAAAGTGGCGGAATTGGTaGACGCACTGGATTTAGGTTCCAGCGGGGC............GaCCCGTGAGAGTTCGAGTCTCTC.CTTTCGCACCA chr.trna31-LeuTAG Sc: 71.89  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.>........<.<.<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGGCGGAATTGGTaGACGCGCCGGATTCAAAATCCGGT.GGTGGT........GAC.ACCGTGTGGGTTCGAGTCCCAC.CCTCGGTACCA chr.trna40-LeuCAA Sc: 76.90  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>............<.<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGAAACAGGTaGACGCAAGGGACTTAAAATCCCTC.GGTG..GTAA......C.ACCATGCCGGTTCGATTCCGGC.CCTGGGCACCA chr.trna23-LeuTAA Sc: 75.76  



Lys tRNAs


>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCGTTAGCTCAGTTGGTAGAGCAGGAGACTCTTAATCTCAGG...........GtCATAGGTTCGAATCCTATACGGCCCA... chr.trna24-LysCTT Sc: 85.35  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGTTAGCTCAGGTGGTAGAGCAGGAGGCTTTTAACCTCTGT...........GtCATAGGTTCGAATCCTATACGGCCCACCA chr.trna12-LysTTT Sc: 88.81  
GGGCCGTTAGCTCAGGTGGTAGAGCAGGAGGCTTTTAACCTCTGT...........GtCATAGGTTCGAATCCTATACGGCCCACCA chr.trna11-LysTTT Sc: 88.81  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCATAGCTCAGTT.GGTcAGAGCAGCGGACTCATAATCCGTTG...........GtCCTAGGTTCAAGTCCTAGTGGGCCCACCA chr.trna14-MetCAT Sc: 94.81  
GGCTATGTAGCTCAGCC.GGTtAGAGCGCGGCACTCATAATGCTGAG...........GtCGGTGGTTCGAGTCCACCCATAGCCACCA chr.trna36-MetCAT Sc: 93.63  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCTACCA chr.trna17-MetCAT Sc: 84.63  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCGGCAGTTCGATTCTGCCTCTGGCCACCA chr.trna10-PheGAA Sc: 90.90  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCACTAGCATGGGGTGCTAGTG...........GtCGAAGGTTCAAATCCTTCCGTCCCGACCA chr.trna20-ProGGG Sc: 79.71  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTAGCTCAGATtGGTAGAGCACTGCCTTCGGGAGGCAGGG...........GtCGCAGGTTCAATTCCTGTCACTCCGACCA chr.trna42-ProCGG Sc: 86.71  

>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<....
CGGGGTGTAGCGCAGTCtGGTAGCGCGCCTGCTTTGGGAGCAGGAT...........GtCGGGGGTTCAAATCCCTCCTCCCCGACCA chr.trna28-ProTGG Sc: 85.59  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.......<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGCGGTcgA.AGGCGCACGCCTGGAAAGTGTGT.ATACG.GCAA..CGTAT.CGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna39-SerGGA Sc: 72.38  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>.........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCAGAGCGGTcgA.TTGCGGCGGTCTTGAAAACCGTTGAAGG..GCAA...CCTTCCCAGGGTTCGAATCCCTG..TCTCTCCGCCA chr.trna38-SerTGA Sc: 62.37  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.....<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGTGGTcgA.AGGCGCTCCCCTGCTAAGGGAGT.ATGGGAGAAA.TCCCAT.CGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna34-SerGCT Sc: 77.22  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCACATAGCTCAGGCGGTAGAGCACTTCCTTGGTAAGGAAGAG...........GtCGTTGGTTCGAGTCCAGTTGTGGGCACCA chr.trna5-ThrGGT Sc: 90.41  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGTTGTAGCTCAGTTGGTAGAGCAATTGATTCGTAATCAAGAG...........GtCGGAGGTTCGACTCCTCTCAGCGGCA... chr.trna9-ThrCGT Sc: 80.63  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGCGTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCCCGGGTTCGATTCCTGGTGCCAGCACCA chr.trna2-ThrTGT Sc: 94.56  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCCAGTAGCTCAATTGGCAGAGTGGCGGTCTCCAAAACCGCAG...........GtTGGGGGTTCGATTCCCTCCTGGCCTGCCA chr.trna6-TrpCCA Sc: 82.40  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTTCCCGAGCGGTcaA.AGGGATCAGACTGTAAATCTGACGGCTCA.....GCCTtCGAAGGTTCGAATCCTTC.CCCCTCCACCA chr.trna3-TyrGTA Sc: 73.58  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCACGTAGCTCAGT.GGTA.GAGCACCACCTTGACATGGTGGTG...........GtCGGTGGTTCGATCCCACTCGTGCCTACCA chr.trna19-ValGAC Sc: 86.87  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGCTTAGCTCAGCTGGGA.GAGCATCGCCCTTACAAGGCGAGG...........GtCGTAGGTTCGATCCCTACAGCACCCACCA chr.trna32-ValTAC Sc: 93.01

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.