tRNAscan-SE Analysis of the Lactobacillus plantarum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	504518	504592	View	Ile	GAT	0	0	90.49	68.99	21.50	Both
chr	2	504634	504706	View	Ala	TGC	0	0	85.72	67.58	18.14	Both
chr	3	507981	508053	View	Asn	GTT	0	0	79.75	58.63	21.12	Both
chr	4	508099	508171	View	Thr	CGT	0	0	78.82	54.51	24.31	Both
chr	5	511258	511340	View	Tyr	GTA	0	0	70.08	43.07	27.01	Both
chr	6	511350	511421	View	Gln	TTG	0	0	67.96	40.56	27.40	Both
chr	7	531682	531769	View	Leu	AAG	0	0	63.05	28.85	34.20	Both
chr	8	606324	606396	View	Asn	GTT	0	0	86.88	65.55	21.33	Both
chr	9	774992	775063	View	Asn	GTT	0	0	70.83	50.16	20.67	Both
chr	10	934819	934900	View	Leu	TAG	0	0	68.50	43.93	24.57	Both
chr	11	934904	934976	View	Thr	AGT	0	0	84.05	66.19	17.86	Both
chr	12	935001	935072	View	Gly	GCC	0	0	79.21	60.80	18.41	Both
chr	13	935081	935166	View	Leu	TAA	0	0	65.63	40.65	24.98	Both
chr	14	935177	935250	View	Arg	ACG	0	0	68.44	50.32	18.12	Eufind
chr	15	935258	935331	View	Pro	TGG	0	0	87.37	65.87	21.50	Both
chr	16	935382	935455	View	Pro	CGG	0	0	78.94	57.34	21.60	Both
chr	17	1061664	1061736	View	Arg	CCT	0	0	59.33	40.06	19.27	Both
chr	18	1170820	1170894	View	Ile	GAT	0	0	90.49	68.99	21.50	Both
chr	19	1170936	1171008	View	Ala	TGC	0	0	85.72	67.58	18.14	Both
chr	20	1174283	1174355	View	Asn	GTT	0	0	79.75	58.63	21.12	Both
chr	21	1174374	1174463	View	Ser	GGA	0	0	59.92	21.22	38.70	Both
chr	22	1174485	1174557	View	Glu	TTC	0	0	65.25	36.49	28.76	Both
chr	23	1174562	1174634	View	Val	TAC	0	0	89.46	68.84	20.62	Both
chr	24	1174690	1174762	View	Phe	GAA	0	0	76.56	61.65	14.91	Both
chr	25	1174768	1174850	View	Tyr	GTA	0	0	70.08	43.07	27.01	Both
chr	26	1174859	1174932	View	Trp	CCA	0	0	70.74	46.44	24.30	Both
chr	27	1174938	1175010	View	His	GTG	0	0	65.23	41.60	23.63	Both
chr	28	1175018	1175089	View	Gln	TTG	0	0	66.96	36.67	30.29	Both
chr	29	1175112	1175182	View	Cys	GCA	0	0	71.31	44.14	27.17	Both
chr	30	1175238	1175325	View	Leu	CAA	0	0	61.66	31.95	29.71	Both
chr	31	1271644	1271714	View	Gly	CCC	0	0	60.65	38.07	22.58	Both
chr	32	1271771	1271848	View	Asp	GTC	0	0	76.93	50.06	26.87	Both
chr	33	1876412	1876499	View	Ser	CGA	0	0	71.96	44.74	27.22	Both
chr	34	2199001	2199086	View	Ile	TAT	0	0	33.47	11.76	21.71	Both
chr	35	2199331	2199414	View	Undet	???	0	0	25.28	12.67	12.61	Eufind
chr	36	2199699	2199772	View	Met	CAT	0	0	83.13	56.19	26.94	Both
chr	37	2199778	2199848	View	Gly	TCC	0	0	68.00	42.87	25.13	Both
chr	38	2204512	2204584	View	Gln	CTG	0	0	65.84	37.32	28.52	Both
chr	39	3039279	3039351	View	Ala	CGC	0	0	83.99	69.38	14.61	Both
chr	40	2498576	2498504	View	Thr	GGT	0	0	75.26	48.44	26.82	Both
chr	41	2204121	2204049	View	Glu	CTC	0	0	57.59	30.26	27.33	Both
chr	42	2187129	2187057	View	Asn	GTT	0	0	86.88	65.55	21.33	Both
chr	43	2186987	2186916	View	Trp	CCA	0	0	46.03	17.61	28.42	Both
chr	44	2015774	2015699	View	Val	TAC	0	0	90.08	69.43	20.65	Both
chr	45	2015697	2015625	View	Lys	TTT	0	0	81.01	53.70	27.31	Both
chr	46	2015447	2015372	View	Val	TAC	0	0	90.08	69.43	20.65	Both
chr	47	2015370	2015298	View	Lys	TTT	0	0	81.01	53.70	27.31	Both
chr	48	2015203	2015131	View	Thr	TGT	0	0	86.05	67.96	18.09	Both
chr	49	2015114	2015043	View	Gly	GCC	0	0	79.21	60.80	18.41	Both
chr	50	2015027	2014942	View	Leu	TAA	0	0	65.63	40.65	24.98	Both
chr	51	2014931	2014858	View	Arg	ACG	0	0	68.44	50.32	18.12	Eufind
chr	52	2014852	2014779	View	Pro	TGG	0	0	87.37	65.87	21.50	Both
chr	53	2014747	2014674	View	Met	CAT	0	0	72.68	63.52	9.16	Both
chr	54	2014658	2014585	View	Met	CAT	0	0	86.88	61.22	25.66	Both
chr	55	2014545	2014456	View	Ser	TGA	0	0	63.30	24.85	38.45	Both
chr	56	2014449	2014376	View	Met	CAT	0	0	78.07	51.31	26.76	Both
chr	57	2014372	2014298	View	Asp	GTC	0	0	76.31	49.46	26.85	Both
chr	58	2014268	2014196	View	Phe	GAA	0	0	76.56	61.65	14.91	Both
chr	59	2014183	2014113	View	Gly	TCC	0	0	63.00	36.99	26.01	Both
chr	60	2014106	2014032	View	Ile	GAT	0	0	90.49	68.99	21.50	Both
chr	61	2014027	2013940	View	Ser	GCT	0	0	59.52	21.61	37.91	Both
chr	62	2013920	2013848	View	Glu	TTC	0	0	65.25	36.49	28.76	Both
chr	63	2013838	2013765	View	Met	CAT	0	0	78.07	51.31	26.76	tRNAscan
chr	64	2013762	2013685	View	Asp	GTC	0	0	76.93	50.06	26.87	Both
chr	65	1448616	1448543	View	Arg	TCT	0	0	74.25	47.92	26.33	Both
chr	66	1252863	1252780	View	Leu	CAG	0	0	58.59	29.74	28.85	Both
chr	67	1252391	1252319	View	His	GTG	0	0	65.23	41.60	23.63	Both
chr	68	722244	722170	View	Arg	CCG	0	0	57.23	38.35	18.88	Both
chr	69	593450	593365	View	Ile	TAT	0	0	32.72	12.58	20.14	Both
chr	70	593120	593037	View	Undet	???	0	0	25.28	12.67	12.61	Eufind
chr	71	591480	591410	View	Gly	TCC	0	0	68.00	42.87	25.13	Both
chr	72	37446	37371	View	Lys	CTT	0	0	86.36	62.18	24.18	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.