tRNAscan-SE Analysis of the Lactobacillus plantarum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs




>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAG...........GtCGTCGGTTCAAATCCGGTAGGGTCCA... chr.trna39-AlaCGC Sc: 83.99  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCAGCGGTTCGATCCCGCTATTCTCCA... chr.trna2-AlaTGC Sc: 85.72  
GGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCAGCGGTTCGATCCCGCTATTCTCCA... chr.trna19-AlaTGC Sc: 85.72  



Arg tRNAs


>>>>>>>..>>.>..........<.<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCATAGCGCAATTGGAtA.GAGTGTCTGACTACGAATCAGAAG...........GtTGTAGGTTCGACTCCTACTGGGTGCA... chr.trna51-ArgACG Sc: 68.44  
GCACCCATAGCGCAATTGGAtA.GAGTGTCTGACTACGAATCAGAAG...........GtTGTAGGTTCGACTCCTACTGGGTGCA... chr.trna14-ArgACG Sc: 68.44  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTGGTGTAAT.GGAtA.GCACGTAAGATTCCGGTTCTTGAG...........A.TGGGGGTTCGATTCCCTCCGGGCGCATCA chr.trna68-ArgCCG Sc: 57.23  


>>>>>>>..>>.>..........<.<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGCCTCATAGCACAACTGGAtA.GGGCACCCGCCTCCTAAGCGGTTG...........A.TCCCGGTTCGAGTCCGGGTGAGGTCA... chr.trna17-ArgCCT Sc: 59.33  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCACGGTAGCTCAACTGGAtA.GAGCATCCGCCTTCTAAGCGGAGG...........GtTGTGAGTTCAAGTCTCACTCGTGACA... chr.trna65-ArgTCT Sc: 74.25  



Asn tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCCTTAGCTCAGTTGGTA.GAGCACCTGACTGTTAATCAGGTT...........GtCGCTGGTTCGAGTCCAGCAGGCTACG... chr.trna8-AsnGTT Sc: 86.88  
GTGGCCTTAGCTCAGTTGGTA.GAGCACCTGACTGTTAATCAGGTT...........GtCGCTGGTTCGAGTCCAGCAGGCTACG... chr.trna42-AsnGTT Sc: 86.88  
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
TCCGACATAGCTCAGTTGGTA.GAGCGCTTGACTGTTAATCAAGAT...........GtCGACGGTTCGAGCCCGCCTGTCGGAG... chr.trna3-AsnGTT Sc: 79.75  
TCCGACATAGCTCAGTTGGTA.GAGCGCTTGACTGTTAATCAAGAT...........GtCGACGGTTCGAGCCCGCCTGTCGGAG... chr.trna20-AsnGTT Sc: 79.75  
>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
TGCCCGGTAGTTCAGC.GGTA.GAATAATTGACTGTTAATCAAGAG...........GtCGCTGGTTCGATCCCAGCCCGGGCAG... chr.trna9-AsnGTT Sc: 70.83  



Asp tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCGTTGGTCTAGTTGGTttAGGACGCCTGCCTGTCACGCAGGAG...........AtCACGAGTTCGAGTCTCGTACGGACCGTCA chr.trna64-AspGTC Sc: 76.93  
GGTCCGTTGGTCTAGTTGGTttAGGACGCCTGCCTGTCACGCAGGAG...........AtCACGAGTTCGAGTCTCGTACGGACCGTCA chr.trna32-AspGTC Sc: 76.93  
GGTCCGTTGGTCTAGTTGGTttAGGACGCCTGCCTGTCACGCAGGAG...........AtCACGAGTTCGAGTCTCGTACGGACCG... chr.trna57-AspGTC Sc: 76.31  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GGCGGTATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTC...........AtCACCGGTTCAAATCCGGT.TACCGCCT... chr.trna29-CysGCA Sc: 71.31  



Gln tRNAs


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGTATTCGCCAAATTGGTA.AGGCAGCGGACTCTGAATCCGTAA...........TtTACTGGTTCGAGCCCAGTATACCCAA... chr.trna38-GlnCTG Sc: 65.84  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGCTATAGCCAAGT.GGTA.AGGCAACGGGTTTTGATCCCGTGA...........TgCGCTGGTTCGAACCCAGCTAGCCCAA... chr.trna6-GlnTTG Sc: 67.96  
TGGGTTATAGCCAAGT.GGTA.AGGCAATGGACTTTGACTCCATCA...........TgCGCTGGTTCGAATCCAGCTAACCCAG... chr.trna28-GlnTTG Sc: 66.96  



Glu tRNAs


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
TGCCCGCTGGTCAAATTGGTt.A.AGACGTCGCCCTCTCAAGGCGGA............GtTACGGGTTCGATCCCCGT.GCGGGTGA... chr.trna41-GluCTC Sc: 57.59  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GACCCCTTGGTCAAGT.GGTttA.AGACACTGCCCTTTCACGGCAGTA...........A.CATGGGTTCGAATCCCGT.AGGGGTCA... chr.trna62-GluTTC Sc: 65.25  
GACCCCTTGGTCAAGT.GGTttA.AGACACTGCCCTTTCACGGCAGTA...........A.CATGGGTTCGAATCCCGT.AGGGGTCA... chr.trna22-GluTTC Sc: 65.25  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGAAGTAGTTCAGTGGTA.GAACATCACCTTGCCATGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCT... chr.trna49-GlyGCC Sc: 79.21  
GCGGAAGTAGTTCAGTGGTA.GAACATCACCTTGCCATGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCT... chr.trna12-GlyGCC Sc: 79.21  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTAGTTTAGTGGTA.AAATTCAAGCTTCCCAAGCTTGC............GtCGCGGGTCCGATTCCCGT.CACCCGCT... chr.trna31-GlyCCC Sc: 60.65  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGAGTGTAGTTTAGTGGTA.AAACGACAGCCTTCCAAGCTGTA............GtCGCGGGTCCGATTCCCGT.CACTCGCT... chr.trna71-GlyTCC Sc: 68.00  
GCGAGTGTAGTTTAGTGGTA.AAACGACAGCCTTCCAAGCTGTA............GtCGCGGGTCCGATTCCCGT.CACTCGCT... chr.trna37-GlyTCC Sc: 68.00  
GCGGGTATAGTTTAGTGGTA.AAACCACAGCCTTCCAAGCTGTT............GtCGCGAGTCCGATTCTCGT.TACCCGCT... chr.trna59-GlyTCC Sc: 63.00  



His tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTAGTGGCGAAGTGGTtA.ACGCACCGGATTGTGGCTCCGGCA...........CgCGTGGGTTCGATTCCCACCTACCGCC... chr.trna67-HisGTG Sc: 65.23  
GCGGTAGTGGCGAAGTGGTtA.ACGCACCGGATTGTGGCTCCGGCA...........CgCGTGGGTTCGATTCCCACCTACCGCC... chr.trna27-HisGTG Sc: 65.23  



Ile tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.........................>>>>>.......<<<<<.<<<<<<<....
GGGCCTATAGCTCAGCTGGTttA.GAGCGCACGCCTGATAAGCGTGAG....................GtCGATGGTTCAAGTCCATT.TAGGCCCA... chr.trna60-IleGAT Sc: 90.49  
GGGCCTATAGCTCAGCTGGTttA.GAGCGCACGCCTGATAAGCGTGAG....................GtCGATGGTTCAAGTCCATT.TAGGCCCA... chr.trna18-IleGAT Sc: 90.49  
GGGCCTATAGCTCAGCTGGTttA.GAGCGCACGCCTGATAAGCGTGAG....................GtCGATGGTTCAAGTCCATT.TAGGCCCA... chr.trna1-IleGAT Sc: 90.49  

>>>>>>>..>>>>...........<<<<.>>>.>.......<.<<<...>>.>>........<<.<<....>>>>>.......<<<<<.<<<<<<<....
GCGAGCGTAGTTCAAC.GGT..A.GAACAGTACTCCTATGAATTGCTAACTAGATACT....TTCAGA..TGCAGGTTCGACTCCTGC.CGCTCGCT... chr.trna34-IleTAT Sc: 33.47  
GCGAGCGTAGTTCAAC.GGT..A.GAACAGTACTCCTATGAATTGCTAACTAGATACT....TTCAGA..CGTAGGTTCGACTCCTGC.CGCTCGCT... chr.trna69-IleTAT Sc: 32.72  



Leu tRNAs


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGCCATGGCGGAATTGGCaGACGCGCAAGATTAAGGATCTTGTCGGGG.TTAA....CCCGGTGGAAGTTCGAATCTTCT.TGGCCGCACTA chr.trna7-LeuAAG Sc: 63.05  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.........<<<<...>>>>.......<<<<..<<<<<<<....
GCCCCAGTGGCGGAACTGGCaGACGCGCAGCGTTCAGGTCGCTGT.ATTG.GAAA....CAATGTACAGGTTCGAATCCTGC.CTGGGGCA... chr.trna66-LeuCAG Sc: 58.59  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>...........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGCGGAACTGGCaGACGCGCTAGATTTAGGTTCTAGT.GTC..TTAC.....GACGTGGGGGTTCGAGTCCCTT.CACCCGCA... chr.trna10-LeuTAG Sc: 68.50  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGCGTGGCGGAATTGGCaGACGCGCTGGACTCAAAATCCAGT.TCCC.GTTGa...GGGAGTATCGGTTCGACCCCGAT.CGCCGGTACTA chr.trna30-LeuCAA Sc: 61.66  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.......<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGGCGGAATTGGCaGACGCACAGGACTTAAAATCCTGC.GGTTAGTGA...TAACCGTACCGGTTCGATCCCGGT.CCTCGGCA... chr.trna50-LeuTAA Sc: 65.63  
GCCGGGGTGGCGGAATTGGCaGACGCACAGGACTTAAAATCCTGC.GGTTAGTGA...TAACCGTACCGGTTCGATCCCGGT.CCTCGGCA... chr.trna13-LeuTAA Sc: 65.63  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCAGTTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGG...........GtCCAGGGTTCGATCCCCTGACTGCCCATCA chr.trna72-LysCTT Sc: 86.36  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGACAGTTCGAGACTGTCACGGCTCA... chr.trna47-LysTTT Sc: 81.01  
GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCGACAGTTCGAGACTGTCACGGCTCA... chr.trna45-LysTTT Sc: 81.01  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGACCTTTAGCTCAGTT.GGTtAGAGCAGACGGCTCATAACCGTCCG...........GtCGTAGGTTCGAGCCCTACAAGGTCCA... chr.trna54-MetCAT Sc: 86.88  
GGACCTTTAGCTCAGTT.GGTcAGAGCAGACGGCTCATAACCGTCCT...........GtCGTTGGTTCGAGTCCAACAAGGTCCA... chr.trna36-MetCAT Sc: 83.13  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAACCCTGCTCCCGCAA... chr.trna63-MetCAT Sc: 78.07  
CGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCAGGTTCAAACCCTGCTCCCGCAA... chr.trna56-MetCAT Sc: 78.07  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
CGCGGTGTAGCTCAGCT.GGCtAGAGCGTCCGGTTCATACCCGGGAG...........GtCGAGGGTTCGATTCCCCCTGCCGCGA... chr.trna53-MetCAT Sc: 72.68  



Phe tRNAs



>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<....
GGCTCGGTAGCTCAGTCGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCCCGCGCCA... chr.trna58-PheGAA Sc: 76.56  
GGCTCGGTAGCTCAGTCGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCCCGCGCCA... chr.trna24-PheGAA Sc: 76.56  



Pro tRNAs




>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGAAGTAGCTCAGCTtGGTAGAGCACTACGTTCGGGACGTAGGG...........GtCGCAGGTTCAAATCCTGTTTTCCCGA... chr.trna16-ProCGG Sc: 78.94  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGAAATAGCTCAGCTtGGTAGAGCACCTGGTTTGGGACCAGGGG...........GtCGCAGGTTCGAATCCTGTTTTCCCGA... chr.trna52-ProTGG Sc: 87.37  
CGGGAAATAGCTCAGCTtGGTAGAGCACCTGGTTTGGGACCAGGGG...........GtCGCAGGTTCGAATCCTGTTTTCCCGA... chr.trna15-ProTGG Sc: 87.37  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGTTGTCCGAGT..GGCtgA.AGGAGCAGCATTGGAAATGCTGT.AAACGGGTTATaCCTGTTTCAAGGGTTCGAATCCCTT..ACTCTCCG... chr.trna21-SerGGA Sc: 59.92  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<....>>>>.......<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGTTGGCAGAGT..GGT..A.ATGCACCGGACTCGAAATCCGGCGAACCGGCTAA.tACCGGCGCGCAGGTTCAAATCCTGT..ACTCTCCT... chr.trna33-SerCGA Sc: 71.96  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>.........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGGATTACCCAAGTCtGGCtgA.AGGGAACGGTCTTGAAAACCGTCAGGTGGG.TCAA..ACCACGCGAGAGTTCGAATCTCTC..ATCCTCCT... chr.trna55-SerTGA Sc: 63.30  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>.......<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAAGTACTCAAGT..GGCtgA.AGAGGTGCCCCTGCTAAGGGTATAGATCGC.GCAA..GCGGTGCGAGGGTTCGAATCCCTC..CTTCTCCG... chr.trna61-SerGCT Sc: 59.52  



Sup tRNAs






Thr tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGACTTAGCTCAGTTGGCAGAGCATCTCACTAGTAATGAGGAG...........GtCGGAGGTTCGAATCCTCTAGTCGGCA... chr.trna11-ThrAGT Sc: 84.05  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGTTTTAGCTCAGCAGGTAGAGCACTTCCATGGTAAGGAAGAG...........GtCGGCAGTTCAAATCTGCTAAACGGCT... chr.trna40-ThrGGT Sc: 75.26  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGCTTAGCTCAGTTGGTAGAGCATCGGTATCGTAAACCGAGG...........GtCATCAGTTCGACTCTGGTAGCCGGCA... chr.trna4-ThrCGT Sc: 78.82  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGACTTAGCTCAGCTGGCAGAGCATCTGTCTTGTAAACAGGGG...........GtCGGAGGTTCGAATCCTCTAGTCGGCA... chr.trna48-ThrTGT Sc: 86.05  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGGGATATAGTTTAAT.GGTA.GAACAACGGTCTCCAAAACCGTCG...........GTGTGGGTTCAACTCCTACTATCCCTGCCA chr.trna26-TrpCCA Sc: 70.74  
GCAGATATGATCTAATTGGCA.AGATGGCGGTCTCCAAAACCGTCT...........ATGTTGGTTCAAATCCAGCTATCTGTG... chr.trna43-TrpCCA Sc: 46.03  



Tyr tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTAGCGAAGTCtGGCtaAACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGTGGTTCGAATCCACT.CCCCTCCA... chr.trna5-TyrGTA Sc: 70.08  
GGAGGGGTAGCGAAGTCtGGCtaAACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGTGGTTCGAATCCACT.CCCCTCCA... chr.trna25-TyrGTA Sc: 70.08  



Val tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGGATTAGCTCAGTTGGGAGAGCGTCTGCCTTACAAGCAGAGG...........GtCACAGGTTCGAGCCCTGTATCCTCCATCA chr.trna46-ValTAC Sc: 90.08  
GGAGGATTAGCTCAGTTGGGAGAGCGTCTGCCTTACAAGCAGAGG...........GtCACAGGTTCGAGCCCTGTATCCTCCATCA chr.trna44-ValTAC Sc: 90.08  
GGAGGATTAGCTCAGTTGGGAGAGCGTCTGCCTTACAAGCAGAGG...........GtCACAGGTTCGAGCCCTGTATCCTCCA... chr.trna23-ValTAC Sc: 89.46

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.