tRNAscan-SE Analysis of the Lactococcus lactis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	15	539202	539274	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	33	2363444	2363372	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	36	2344265	2344193	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	44	2264034	2263962	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	45	2221522	2221450	View	Ala	TGC	0	0	84.64	67.45	17.19	Both
chr	48	1984461	1984389	View	Ala	TGC	0	0	84.64	67.45	17.19	Both

chr	22	543091	543164	View	Arg	ACG	0	0	73.18	55.33	17.85	Both
chr	9	282716	282789	View	Arg	ACG	0	0	73.18	55.33	17.85	Both

chr	30	617800	617871	View	Arg	CCG	0	0	54.50	31.92	22.58	Both

chr	32	1711201	1711273	View	Arg	CCT	0	0	58.19	34.73	23.46	Both

chr	12	447083	447156	View	Arg	TCT	0	0	79.44	60.13	19.31	Both

chr	35	2360016	2359943	View	Asn	GTT	0	0	74.24	48.39	25.85	Both
chr	7	28818	28891	View	Asn	GTT	0	0	74.24	48.39	25.85	Both

chr	17	542618	542690	View	Asp	GTC	0	0	72.62	45.01	27.61	Both
chr	50	1981046	1980974	View	Asp	GTC	0	0	72.62	45.01	27.61	Both

chr	11	424317	424387	View	Cys	GCA	0	0	60.16	38.23	21.93	Both

chr	41	2340595	2340524	View	Gln	TTG	0	0	64.56	36.74	27.82	Both
chr	56	1690779	1690708	View	Gln	TTG	0	0	64.56	36.74	27.82	Both

chr	1	28196	28267	View	Glu	TTC	0	0	64.66	38.01	26.65	Both
chr	34	2360124	2360053	View	Glu	TTC	0	0	64.66	38.01	26.65	Both

chr	21	542981	543052	View	Gly	GCC	0	0	72.25	43.88	28.37	Both
chr	54	1980683	1980612	View	Gly	GCC	0	0	72.25	43.88	28.37	Both

chr	27	543531	543601	View	Gly	TCC	0	0	66.56	44.70	21.86	Both
chr	5	28535	28605	View	Gly	TCC	0	0	66.56	44.70	21.86	Both

chr	40	2340675	2340603	View	His	GTG	0	0	66.52	42.58	23.94	Both

chr	28	543628	543701	View	Ile	GAT	0	0	79.86	56.79	23.07	Both
chr	6	28620	28693	View	Ile	GAT	0	0	79.86	56.79	23.07	Both

chr	59	256130	256042	View	Leu	AAG	0	0	56.98	29.19	27.79	Both
chr	62	123448	123360	View	Leu	AAG	0	0	56.98	29.19	27.79	Both

chr	42	2340511	2340428	View	Leu	CAA	0	0	61.97	34.20	27.77	Both

chr	43	2299451	2299369	View	Leu	CAG	0	0	62.88	31.83	31.05	Both

chr	47	2012621	2012538	View	Leu	TAA	0	0	58.41	33.85	24.56	Both
chr	55	1980576	1980491	View	Leu	TAA	0	0	61.13	28.84	32.29	Both

chr	19	542789	542870	View	Leu	TAG	0	0	66.93	44.40	22.53	Both
chr	52	1980875	1980794	View	Leu	TAG	0	0	66.93	44.40	22.53	Both

chr	8	56361	56433	View	Lys	CTT	0	0	80.33	61.23	19.10	Both

chr	18	542708	542780	View	Lys	TTT	0	0	83.14	58.94	24.20	Both
chr	51	1980956	1980884	View	Lys	TTT	0	0	83.14	58.94	24.20	Both
chr	31	618494	618569	View	Lys	TTT	0	0	83.76	59.54	24.22	Both

chr	14	517530	517603	View	Met	CAT	0	0	51.57	29.20	22.37	Both
chr	3	28373	28446	View	Met	CAT	0	0	74.76	46.33	28.43	Both
chr	24	543281	543354	View	Met	CAT	0	0	75.67	64.31	11.36	Both
chr	25	543367	543440	View	Met	CAT	0	0	86.03	60.08	25.95	Both

chr	26	543448	543520	View	Phe	GAA	0	0	75.06	63.13	11.93	Both
chr	4	28451	28523	View	Phe	GAA	0	0	75.06	63.13	11.93	Both

chr	10	283094	283167	View	Pro	TGG	0	0	80.16	58.27	21.89	Both
chr	23	543170	543243	View	Pro	TGG	0	0	80.16	58.27	21.89	Both

chr	61	126597	126511	View	Ser	CGA	0	0	63.62	38.77	24.85	Both

chr	29	543744	543831	View	Ser	GCT	0	0	58.10	23.40	34.70	Both

chr	58	275599	275512	View	Ser	GGA	0	0	52.85	23.31	29.54	Both

chr	2	28273	28362	View	Ser	TGA	0	0	61.73	28.40	33.33	Both
chr	57	1412438	1412349	View	Ser	TGA	0	0	62.33	26.56	35.77	Both

chr	60	155312	155240	View	Thr	CGT	0	0	78.25	64.98	13.27	Both

chr	46	2151502	2151430	View	Thr	GGT	0	0	70.82	48.87	21.95	Both

chr	20	542883	542955	View	Thr	TGT	0	0	83.91	58.80	25.11	Both
chr	53	1980781	1980709	View	Thr	TGT	0	0	83.91	58.80	25.11	Both

chr	39	2340756	2340686	View	Trp	CCA	0	0	47.03	19.25	27.78	Eufind

chr	38	2340843	2340763	View	Tyr	GTA	0	0	65.00	37.59	27.41	Both

chr	13	483875	483935	View	Undet	???	0	0	30.70	24.12	6.58	Eufind

chr	16	542516	542588	View	Val	TAC	0	0	84.84	63.40	21.44	Both
chr	37	2340951	2340879	View	Val	TAC	0	0	84.84	63.40	21.44	Both
chr	49	1981148	1981076	View	Val	TAC	0	0	84.84	63.40	21.44	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.