tRNAscan-SE Analysis of the Lactococcus lactis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna48-AlaTGC Sc: 84.64  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna45-AlaTGC Sc: 84.64  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna44-AlaTGC Sc: 84.64  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna36-AlaTGC Sc: 84.64  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna33-AlaTGC Sc: 84.64  
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... chr.trna15-AlaTGC Sc: 84.64  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCAGGCGTGGCTCAACTGGAtA.GAGTACCTGACTACGAATCAGGCG...........GtTGTAGGTTCGAATCCTAC.CGCTTGCA... chr.trna9-ArgACG Sc: 73.18  
GCAGGCGTGGCTCAACTGGAtA.GAGTACCTGACTACGAATCAGGCG...........GtTGTAGGTTCGAATCCTAC.CGCTTGCA... chr.trna22-ArgACG Sc: 73.18  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGTCCGTAGTGTAAT.GGAtA.TCACGTAAGATTCCGGTTCTTGAG...........A.TGGGGGTTCGATTCCCTC.CGGACGCA... chr.trna30-ArgCCG Sc: 54.50  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GGTCTCTTAGTTAAATTGGAtA.TAACTACTGCCTCCTAAGCAGTG............AtTGCCAGTTCGATTCTGGC.AGGGGCCA... chr.trna32-ArgCCT Sc: 58.19  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<.<<<<<<<....
GGTCCGATAGCTCAGCTGGAtA.GAGCATTCGCCTTCTAAGCGAACG...........GtCGAGGGTTCGAATCCCCC.TCGGATCA... chr.trna12-ArgTCT Sc: 79.44  



Asn tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGCGGATTAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTCAGTTCGAGTCTGACATCCGCAG... chr.trna7-AsnGTT Sc: 74.24  
TGCGGATTAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTCAGTTCGAGTCTGACATCCGCAG... chr.trna35-AsnGTT Sc: 74.24  



Asp tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTCTGTAGTGTAGCGGTtA.TCACGTCGCCCTGTCACGGCGAAG...........AtCGCGGGTTCGATTCCCGTCAGAACCG... chr.trna50-AspGTC Sc: 72.62  
GGTTCTGTAGTGTAGCGGTtA.TCACGTCGCCCTGTCACGGCGAAG...........AtCGCGGGTTCGATTCCCGTCAGAACCG... chr.trna17-AspGTC Sc: 72.62  



Cys tRNAs



>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<.<<<<<<<....
GGCGGCGTAGTGAAGTGGTA.ACACATGGCTCTGCAAAAGCTTA...........AtCGTCGGTTCAAATCCGAC.CGTCGCCT... chr.trna11-CysGCA Sc: 60.16  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATAGCCAAGCGGTA.AGGCAAGGGACTTTGACTCCCTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... chr.trna56-GlnTTG Sc: 64.56  
TGGGGTATAGCCAAGCGGTA.AGGCAAGGGACTTTGACTCCCTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... chr.trna41-GlnTTG Sc: 64.56  



Glu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTCCGTTGGTCAAGGGGTtA.AGACACCGCCTTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGACTA... chr.trna34-GluTTC Sc: 64.66  
GGTCCGTTGGTCAAGGGGTtA.AGACACCGCCTTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGACTA... chr.trna1-GluTTC Sc: 64.66  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAACGTAGTTCAGGGGTA.GAACACAACCTTGCCATGGTTGGG...........GtCGCGAGTTCGAATCTCGTCGTTCGCT... chr.trna54-GlyGCC Sc: 72.25  
GCGAACGTAGTTCAGGGGTA.GAACACAACCTTGCCATGGTTGGG...........GtCGCGAGTTCGAATCTCGTCGTTCGCT... chr.trna21-GlyGCC Sc: 72.25  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTAGTTTAATGGTA.GAACCCCAGCCTTCCAAGCTGGCT...........A.CGCGAGTTCGATTCTCGTCATCCGCT... chr.trna5-GlyTCC Sc: 66.56  
GCGGATGTAGTTTAATGGTA.GAACCCCAGCCTTCCAAGCTGGCT...........A.CGCGAGTTCGATTCTCGTCATCCGCT... chr.trna27-GlyTCC Sc: 66.56  



His tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATGTGGTGAAGTGGTtA.ACACACCGGCTTGTGGCGCCGGCA...........CtCGCGAGTTCGATCCTCGTCATCCGCC... chr.trna40-HisGTG Sc: 66.52  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGAGTTTAGCTCAGTTGGTtAGAGCACTGTGTTGATAACGCAGGG...........GtCCCAGGTTCGAATCCTGGAATTCCCA... chr.trna6-IleGAT Sc: 79.86  
GGGAGTTTAGCTCAGTTGGTtAGAGCACTGTGTTGATAACGCAGGG...........GtCCCAGGTTCGAATCCTGGAATTCCCA... chr.trna28-IleGAT Sc: 79.86  




Leu tRNAs


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>..........<<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGTGGTGGCGGAATTGGCaG.ACGCGCAGGATTAAGGATCCTGTCGGGAAT........TTTCTTGgTGCGGGTTCAAGTCCCGC.CCACCGCACTA chr.trna62-LeuAAG Sc: 56.98  
GCGGTGGTGGCGGAATTGGCaG.ACGCGCAGGATTAAGGATCCTGTCGGGAAT........TTTCTTGgTGCGGGTTCAAGTCCCGC.CCACCGCACTA chr.trna59-LeuAAG Sc: 56.98  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GGGGAAGTGGTGGAAT.GGCaG.ACACGCATGCTTCAGGTGCATGT.GCGA..GAAA......TCGCG.TGAGGGTTCAAATCCCTT.CTTCCCCA... chr.trna43-LeuCAG Sc: 62.88  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGCGGAATTGGCaG.ACGCACTAGATTTAGGATCTAGC.GCT...TAAC.......GGCG.TGGGGGTTCAAGTCCCTT.CATCCGCA... chr.trna52-LeuTAG Sc: 66.93  
GCGGATGTGGCGGAATTGGCaG.ACGCACTAGATTTAGGATCTAGC.GCT...TAAC.......GGCG.TGGGGGTTCAAGTCCCTT.CATCCGCA... chr.trna19-LeuTAG Sc: 66.93  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGCGGAATAGGCaG.ACGCGCCAGACTCAAAATCTGGT.TCCT..TCAC......GGGAG.TGCCGGTTCGACCCCGGC.CTTCGGCA... chr.trna42-LeuCAA Sc: 61.97  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>..........<<<<<...>>>>>.......<<<<<.<<<<<<<....
CCCGGGGTGGCGGAACTGGCaG.ACGCACAGGACTTAAAATCCTGC.GAGGG.GTAA.....CCTTCG.TACCGGTTCGAAACCGGT.CCTCGGGA... chr.trna55-LeuTAA Sc: 61.13  
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCTCGAATGGCGGAATTGGCaG.ACGCTGCGGACTTAAAATCCGTT.GGTT..ATTA......AACCG.TGAGGGTTCAAGTCCCTC.TTTGAGCA... chr.trna47-LeuTAA Sc: 58.41  



Lys tRNAs


>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<....
GGCCCGGTAGCTCAGTTGGTAGAGCAGTAGACTCTTAATCTATGG...........GtCCAGGGTTCGAGCCCCTGCCGAGCCA... chr.trna8-LysCTT Sc: 80.33  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCGCTGGTTCGAGCCCAGCACGGGTCACTA chr.trna31-LysTTT Sc: 83.76  
GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCGCTGGTTCGAGCCCAGCACGGGTCA... chr.trna51-LysTTT Sc: 83.14  
GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCGCTGGTTCGAGCCCAGCACGGGTCA... chr.trna18-LysTTT Sc: 83.14  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATCTTTAGCTCAGTT.GGTtAGAGCTATCGGCTCATAACCGATCG...........GtCGCTGGTTCGAATCCAGCAAGATCCA... chr.trna25-MetCAT Sc: 86.03  
GGCGGTGTAGCTCAGCT.GGCtAGAGCGTTCGGTTCATACCCGAGAG...........GtCGGGGGTTCGATCCCCTTCGCCGCTA... chr.trna24-MetCAT Sc: 75.67  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGATGGAGCAGCTaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCATAGGTTCAAATCCTATTCCCGCAA... chr.trna3-MetCAT Sc: 74.76  
AGTTCTTTAGCTTAGTT.GGTtAAAGTCCCCCGCTCATAACGGGGTA...........AgCGCTGGTTTGAGTCCAGCAAGAACCA... chr.trna14-MetCAT Sc: 51.57  



Phe tRNAs



>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<....
GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCTCGCGCCA... chr.trna4-PheGAA Sc: 75.06  
GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCTCGCGCCA... chr.trna26-PheGAA Sc: 75.06  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGT...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... chr.trna23-ProTGG Sc: 80.16  
CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGT...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... chr.trna10-ProTGG Sc: 80.16  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAAGTGTCCGAGT..GGCcgA.AGGAGCACGCCTGGAAAGTGTGT.ATACGTCACAA..GCGTAT.CGGGGGTTCGAATCCCCT..CTTCTCCT... chr.trna58-SerGGA Sc: 52.85  

>>>>.>>..>>>..............<<<.>>>>>.......<<<<<....>>>>.......<<<<....>>>>>.......<<<<<..<<.<<<<....
GGAGCCATGGCAGAGT..GGT..A.ATGCAGCGGACTCGAAATCCGTCGAACCGT.GTAAa.GCGGCG.CAGGGGTTCAAATCCCCT..TGACTCCT... chr.trna61-SerCGA Sc: 63.62  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>.>>.>.......<.<<.<..>>>>>.......<<<<<..<<<<<<<....
GGAGGATTACCCAAGCCtGGCtgA.AGGGAACGGTCTTGAAAACCGTC.AGGCAT.GTAA..AGGCGTGCGTGGGTTCGAATCCCAC..ATCCTCCT... chr.trna57-SerTGA Sc: 62.33  
GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTC.AGGCGT.GTAA..AAGCGTGCGTGGGTTCGAATCCCAC..ATCCTCCT... chr.trna2-SerTGA Sc: 61.73  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>.......<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGGGGGTTACTCAAGA..GGCtgA.AGAGGACGGTTTGCTAAATCGTTAGGTCGG.GAAA..CCGGCG.CGAGGGTTCGAATCCCTT..ACCCCCCT... chr.trna29-SerGCT Sc: 58.10  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGTTGTAGCTCAGTCGGTAGAGCAGCACCATGGTAAGGTGAAG...........GtCGACAGTTCGATTCTGTTCAATGGCA... chr.trna46-ThrGGT Sc: 70.82  

>>>>>>>..>>>>........<<<<.>>>>.........<<<<.................>>>>.......<<<<.<<<<<<<....
GCCGAGTTAGCTCAGTCGGTAGAGCACTTCACTCGTAACGAAGGG...........GtCACAGGTTCGATTCCTGCACTCGGCA... chr.trna60-ThrCGT Sc: 78.25  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGACTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGG...........GtCGCGTGTTCGAATCATGTAGTCGGCA... chr.trna53-ThrTGT Sc: 83.91  
GCCGACTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGG...........GtCGCGTGTTCGAATCATGTAGTCGGCA... chr.trna20-ThrTGT Sc: 83.91  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
ACGGGCATCGTATAAAGGTA.GTACAAAGGTCTCCAAAACCTTTA...........GTGTGGGTTCAATTCCTGCTGCCCGTG... chr.trna39-TrpCCA Sc: 47.03  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAAGGGTAGCGAAGAGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGGGGTTCGAATCCCTC.CCCTTCCA... chr.trna38-TyrGTA Sc: 65.00  



Val tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACTCCCA... chr.trna49-ValTAC Sc: 84.84  
GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACTCCCA... chr.trna37-ValTAC Sc: 84.84  
GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACTCCCA... chr.trna16-ValTAC Sc: 84.84

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.