tRNAscan-SE Analysis of the Lactobacillus johnsonii NCC 533 Genome
|
| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna18 (1888132-1888060) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (1888099-1888097) Score: 76.90
Seq: GGGGGCTTAGCTCAGATGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCATCGGTTCGATCCCGTTAGCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
chr.trna21 (1882617-1882545) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (1882584-1882582) Score: 76.90
Seq: GGGGGCTTAGCTCAGATGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCATCGGTTCGATCCCGTTAGCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
chr.trna29 (1680388-1680315) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (1680354-1680352) Score: 70.13
Seq: GCACCCTTAGCGCAACTGGAtAGAGTGTCTGACTACGAATCAGAAGGtTGAAGGTTCAAATCCTTCAGGGTGCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna56 (1665939-1665866) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (1665905-1665903) Score: 70.13
Seq: GCACCCTTAGCGCAACTGGAtAGAGTGTCTGACTACGAATCAGAAGGtTGAAGGTTCAAATCCTTCAGGGTGCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna14 (707462-707534) Length: 73 bp
Type: Arg Anticodon: CCT at 35-37 (707496-707498) Score: 55.30
Seq: GACCCCGTAGTTCATCTGGAtAGAACAATGGTCTCCTAAACCGTAGAGGTGAGTTCGAATCTCACCGGGGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna73 (1454747-1454674) Length: 74 bp
Type: Arg Anticodon: TCT at 35-37 (1454713-1454711) Score: 76.81
Seq: GGTTTGGTAGCTCAGCTGGAtAGAGCAACGGTCTTCTAAACCGTGGGtCGTGAGTTCGAATCTCACCCAAATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna10 (563466-563538) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (563499-563501) Score: 85.15
Seq: TCCGGCTTAGCTCAGTTGGTAGAGCACCTGACTGTTAATCAGGTTGtCGTCAGTTCGAGTCTGACAGCCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna22 (1879324-1879252) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (1879291-1879289) Score: 85.15
Seq: TCCGGCTTAGCTCAGTTGGTAGAGCACCTGACTGTTAATCAGGTTGtCGTCAGTTCGAGTCTGACAGCCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna66 (1659788-1659716) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (1659755-1659753) Score: 85.15
Seq: TCCGGCTTAGCTCAGTTGGTAGAGCACCTGACTGTTAATCAGGTTGtCGTCAGTTCGAGTCTGACAGCCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna19 (1884839-1884764) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (1884806-1884804) Score: 93.45
Seq: TCCGGCTTAGCTCAGTTGGTAGAGCACCTGACTGTTAATCAGGTTGtCGTCAGTTCGAGTCTGACAGCCGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna34 (1679936-1679864) Length: 73 bp
Type: Asp Anticodon: GTC at 34-36 (1679903-1679901) Score: 62.03
Seq: GGTCCCTTGGTGTAGGGGTtATCACGCCTCCCTGTCACGGAGGAGAtCACCGGTCCGAATCCGGTAGGGACCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna61 (1665487-1665415) Length: 73 bp
Type: Asp Anticodon: GTC at 34-36 (1665454-1665452) Score: 62.03
Seq: GGTCCCTTGGTGTAGGGGTtATCACGCCTCCCTGTCACGGAGGAGAtCACCGGTCCGAATCCGGTAGGGACCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna42 (1678034-1677962) Length: 73 bp
Type: Asp Anticodon: GTC at 34-36 (1678001-1677999) Score: 75.58
Seq: GGTCCCTTAGTGTAGTGGTtATCACGCCTCCCTGTCACGGAGGAGAtCACCGGTTCGAGTCCGGTAGGGACCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna48 (1677533-1677463) Length: 71 bp
Type: Cys Anticodon: GCA at 33-35 (1677501-1677499) Score: 67.47
Seq: GGCGGTGTAGCCAAGTGGTAAGGCACGGGTCTGCAAAACCCTAAtCATCGGTTCAAATCCGATCACCGCCT
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna16 (828382-828454) Length: 73 bp
Type: Gln Anticodon: CTG at 34-36 (828415-828417) Score: 57.22
Seq: TGAGATATAGCCAAATTGGTAAGGCACAGGATTCTGGTTCCTGGATgTTTCGGTTCGAGCCCGAATATCTCAA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna68 (1633407-1633336) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (1633375-1633373) Score: 62.43
Seq: TGGGTTATAGCCAAGTGGTAAGGCAATGGTTTTTGGTACCATCATgCGCTGGTTCGAATCCAGCTAACCCAA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna70 (1631363-1631292) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (1631331-1631329) Score: 62.43
Seq: TGGGTTATAGCCAAGTGGTAAGGCAATGGTTTTTGGTACCATCATgCGCTGGTTCGAATCCAGCTAACCCAA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna47 (1677625-1677554) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (1677593-1677591) Score: 63.39
Seq: TGGGATATAGCCAAGCGGTAAGGCAATGGACTTTGACTTCATCATgCGTTGGTTCGAATCCAACTATCCCAA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna15 (828305-828376) Length: 72 bp
Type: Glu Anticodon: CTC at 34-36 (828338-828340) Score: 60.33
Seq: TGCCCGTTGGTCAAATGGTtAAGACGCCACCCTCTCAAGGTGGAGtTACGAGTTCAATTCTCGTACGGGTGA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna75 (1317009-1316937) Length: 73 bp
Type: Glu Anticodon: TTC at 35-37 (1316975-1316973) Score: 60.61
Seq: GGCTCGTTGGTCAAGTGGTttAAGACACTGGTTTTTCATACCAGTAACACAAGTTCGATTCTTGTACGAGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna7 (340727-340798) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (340760-340762) Score: 62.50
Seq: GGCTCGTTGGTCAAATGGTcAAGACGCCACCCTTTCACGGTGGAGtTACAAGTTCAATTCTTGTACGAGCTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna12 (563769-563840) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (563802-563804) Score: 63.58
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACATGAGTTCAAATCTCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna39 (1678307-1678236) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (1678274-1678272) Score: 64.02
Seq: GACCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACATGAGTTCAAATCTCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna77 (228961-228891) Length: 71 bp
Type: Gly Anticodon: CCC at 33-35 (228929-228927) Score: 54.31
Seq: GCGGGTATAGTTTAATGGTAAAATGTCAGCTTCCCAAGCTGAAGATGCGGGTTCGATTCACGCTATCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<.
chr.trna27 (1680567-1680496) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (1680535-1680533) Score: 83.89
Seq: GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCATGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna54 (1666118-1666047) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (1666086-1666084) Score: 83.89
Seq: GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCATGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna4 (327595-327669) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (327627-327629) Score: 87.51
Seq: GCGGAAGTAGTTCAGTGGTAGAACATCACCTTGCCATGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna36 (1679769-1679696) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (1679737-1679735) Score: 66.15
Seq: GCGGGTATAGTTTAGTGGTAAAACGAAAGCCTTCCAAGCTTTAGtCGCGAGTCCGATTCTCGTTACCCGCTTCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna63 (1665320-1665247) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (1665288-1665286) Score: 66.15
Seq: GCGGGTATAGTTTAGTGGTAAAACGAAAGCCTTCCAAGCTTTAGtCGCGAGTCCGATTCTCGTTACCCGCTTCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna46 (1677705-1677630) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (1677672-1677670) Score: 60.26
Seq: GCGGAATTGGTGAAGTGGTtAACACACCGGTTTGTGGATCCGGCATgCGTGGGTTCGATCCCCACATTCCGCCCTA
Str: >>>>>>>..>>>..........<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna17 (1888241-1888168) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (1888207-1888205) Score: 91.79
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCAAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna20 (1882726-1882653) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (1882692-1882690) Score: 91.79
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCAAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna37 (1679687-1679614) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (1679653-1679651) Score: 91.79
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCAAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna64 (1665238-1665165) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (1665204-1665202) Score: 91.79
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCAAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna71 (1609384-1609296) Length: 89 bp
Type: Leu Anticodon: AAG at 34-36 (1609351-1609349) Score: 62.75
Seq: GCGGGCGTGGCGGAATGGCaGACGCGCAAGACTAAGGATCTTGTGATCGCTTTTAGATCGTGGAAGTTCGAGTCTTCTCGCCCGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna49 (1677431-1677348) Length: 84 bp
Type: Leu Anticodon: CAA at 35-37 (1677397-1677395) Score: 61.65
Seq: GGCGGTGTGGCGGAATTGGCaGACGCGTCAGACTCAAAATCTGGTGTCCCCTGGGACGTATCGGTTCGACCCCGATCACCGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna72 (1554034-1553948) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (1554000-1553998) Score: 58.98
Seq: GCCTCAATGGCGGAATTGGCaGACGCGCAGCGTTCAGGTCGCTGTTCACGCAAGTGAGTGCAGGTTCGACTCCTGTTTGAGGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna28 (1680483-1680398) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (1680449-1680447) Score: 67.41
Seq: GCCGGGGTGGCGGAACTGGCaGACGCACGGGACTTAAAATCCCGCGGTTGGTGACAACCGTACCGGTTCGATTCCGGTCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna55 (1666034-1665949) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (1666000-1665998) Score: 67.41
Seq: GCCGGGGTGGCGGAACTGGCaGACGCACGGGACTTAAAATCCCGCGGTTGGTGACAACCGTACCGGTTCGATTCCGGTCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna25 (1680744-1680660) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (1680710-1680708) Score: 69.44
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGATTTAGGTTCTAGTGTTTTCGGACGTGTGGGTTCAAGTCCCACCACCCGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna52 (1666295-1666211) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (1666261-1666259) Score: 69.44
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGATTTAGGTTCTAGTGTTTTCGGACGTGTGGGTTCAAGTCCCACCACCCGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna78 (87689-87617) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (87656-87654) Score: 84.99
Seq: GGGTGGTTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGtCCAGGGTTCGATCCCCTGACCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna79 (86009-85937) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (85976-85974) Score: 84.99
Seq: GGGTGGTTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGtCCAGGGTTCGATCCCCTGACCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna24 (1680837-1680765) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (1680804-1680802) Score: 84.26
Seq: GAGTCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGGCAGTTCGAGCCTGCCACGACTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna51 (1666388-1666316) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (1666355-1666353) Score: 84.26
Seq: GAGTCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCGGCAGTTCGAGCCTGCCACGACTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna31 (1680205-1680132) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1680171-1680169) Score: 73.74
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTCCGGTTCATACCCGGGAGGtCGAGGGTTCGATCCCCCCCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
chr.trna58 (1665756-1665683) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1665722-1665720) Score: 73.74
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTCCGGTTCATACCCGGGAGGtCGAGGGTTCGATCCCCCCCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
chr.trna33 (1680013-1679940) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1679979-1679977) Score: 76.97
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCATAGGTTCAAATCCTGTTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
chr.trna60 (1665564-1665491) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1665530-1665528) Score: 76.97
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCATAGGTTCAAATCCTGTTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
chr.trna41 (1678111-1678038) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1678077-1678075) Score: 77.97
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCATAGGTTCAAATCCTATTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
chr.trna32 (1680118-1680045) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1680084-1680082) Score: 89.60
Seq: GGACCTTTAGCTCAGTTGGTtAGAGCAGACGGCTCATAACCGTCGGGtCGTAGGTTCGAGTCCTACAAGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna59 (1665669-1665596) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1665635-1665633) Score: 89.60
Seq: GGACCTTTAGCTCAGTTGGTtAGAGCAGACGGCTCATAACCGTCGGGtCGTAGGTTCGAGTCCTACAAGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna9 (341099-341172) Length: 74 bp
Type: Phe Anticodon: GAA at 34-36 (341132-341134) Score: 52.20
Seq: GGCAACTTAGCTCAGTAGGTAGAGCGTTAGAGTGAAGTTCTAAGTcGtCGGTGGTTCGATCCCATCAGTTACCA
Str: >>.>>>>..>>>>........<<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<.<<.
chr.trna35 (1679859-1679787) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (1679826-1679824) Score: 77.44
Seq: GGCTCGATAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGTGtCGGCGGTTCGATTCCGTCTCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.
chr.trna43 (1677956-1677884) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (1677923-1677921) Score: 77.44
Seq: GGCTCGATAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGTGtCGGCGGTTCGATTCCGTCTCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.
chr.trna62 (1665410-1665338) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (1665377-1665375) Score: 77.44
Seq: GGCTCGATAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGTGtCGGCGGTTCGATTCCGTCTCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.
chr.trna5 (327710-327783) Length: 74 bp
Type: Pro Anticodon: CGG at 35-37 (327744-327746) Score: 58.48
Seq: CGGGATGTGGCTCAGCTtGGTAGAGCGCTACGTTCGGGACGTAGAAGtCGCAGGTTCAAATCCTGTACTCTCCT
Str: .>>>>....>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<..<<<<..
chr.trna30 (1680309-1680236) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (1680275-1680273) Score: 87.66
Seq: CGGGAAGTGGCTCAGTTtGGTAGAGCACCTGGTTTGGGACCAGGGGGtCGCAGGTTCGAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna57 (1665860-1665787) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (1665826-1665824) Score: 87.66
Seq: CGGGAAGTGGCTCAGTTtGGTAGAGCACCTGGTTTGGGACCAGGGGGtCGCAGGTTCGAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna76 (775903-775832) Length: 72 bp
Type: Arg Anticodon: CCG at 34-36 (775870-775868) Score: 32.37
Seq: GTGCCCTTAGTGTAATGGAtCGCACGTAAGATTCCGGTTCTTAAAATCTGAGTTCGACTCTCAGGGGGCGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna74 (1330556-1330469) Length: 88 bp
Type: Ser Anticodon: CGA at 33-35 (1330524-1330522) Score: 73.06
Seq: GGAGAGTTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGCTTAtACCGGCGCGCAGGTTCAAATCCTGTACTCTCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>......<<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna38 (1679611-1679522) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (1679577-1679575) Score: 56.58
Seq: GGAGATTTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGTGTAGGTCGGTTTAtACCGGCGCGAGGGTTCGAATCTCTCAATCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna65 (1665162-1665073) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (1665128-1665126) Score: 56.58
Seq: GGAGATTTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGTGTAGGTCGGTTTAtACCGGCGCGAGGGTTCGAATCTCTCAATCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna11 (563561-563650) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (563595-563597) Score: 55.38
Seq: GGAGTGTTGTCCGAGTGGCtgAAGGAGCATGATTGGAAATCATGTATACGGGCTTTaCCTGTATCGAGAGTTCGAATCTCTCACACTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna6 (340597-340667) Length: 71 bp
Type: Ser Anticodon: TGA at 33-35 (340629-340631) Score: 40.16
Seq: AGGAGTGTAGCCAAATGGTACGGCATCGTGTTTGAGCCCGAGTTaTGTTGGTTCGAGTCCAGCCACTCCTA
Str: >>>>>>>..>>>.........<<<.>>>.>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna40 (1678209-1678119) Length: 91 bp
Type: Ser Anticodon: TGA at 37-39 (1678173-1678171) Score: 55.88
Seq: GGAGGATTACCCAAGTCcGGCtgAAGGGAACGGTCTTGAAAACCGTCAGGCGGGTTCTGCCCGCGCGTGGGTCCGAATCCCACATCCTCCT
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>>...<<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna1 (19503-19578) Length: 76 bp
Type: Thr Anticodon: AGT at 34-36 (19536-19538) Score: 82.73
Seq: GCTGACTTAGCTCAGTTGGCAGAGCACGTCACTAGTAATGATGAGGtCGAAGGTTCGAATCCTTTAGTCAGCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna2 (21315-21390) Length: 76 bp
Type: Thr Anticodon: AGT at 34-36 (21348-21350) Score: 82.73
Seq: GCTGACTTAGCTCAGTTGGCAGAGCACGTCACTAGTAATGATGAGGtCGAAGGTTCGAATCCTTTAGTCAGCACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna67 (1643839-1643767) Length: 73 bp
Type: Thr Anticodon: CGT at 34-36 (1643806-1643804) Score: 78.85
Seq: GCTGAATTAGCTCAGTTGGTAGAGCGCTTCCCTCGTAAAGAAGAGGtCGCCAGTTCGATCCTGGCATTCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna3 (209038-209110) Length: 73 bp
Type: Thr Anticodon: GGT at 34-36 (209071-209073) Score: 63.60
Seq: GCCGTTTTAGCTCAGGAGGTAGAGCACCGCCGTGGTAAGGAGGAGGtCCCCAGTTCAAATCTGGGAAACGGCT
Str: >>>>>>>..>>>>........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna26 (1680658-1680586) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (1680625-1680623) Score: 88.52
Seq: GCCGATTTAGCTCAGTTGGTAGAGCATCTGTCTTGTAAACAGGGGGtCGAAGGTTCGAGTCCTTTAATCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna53 (1666209-1666137) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (1666176-1666174) Score: 88.52
Seq: GCCGATTTAGCTCAGTTGGTAGAGCATCTGTCTTGTAAACAGGGGGtCGAAGGTTCGAGTCCTTTAATCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna45 (1677790-1677720) Length: 71 bp
Type: Trp Anticodon: CCA at 33-35 (1677758-1677756) Score: 45.48
Seq: AGGGATATCGTATAAAGGTAGTACATCGGTCTCCAAAACCGCTAGTGTGGGTTCAATTCCTACTATCCCTG
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna8 (340937-341018) Length: 82 bp
Type: Tyr Anticodon: GTA at 34-36 (340970-340972) Score: 46.08
Seq: GGCAAAGTGGTCCAGTAGCaACGACAGCGGACTGTAAATCCGCCACCGAAAGGTTaCGTAGGTGCGAGTCCTACCTTTGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna44 (1677879-1677798) Length: 82 bp
Type: Tyr Anticodon: GTA at 35-37 (1677845-1677843) Score: 64.08
Seq: GGAGGCCTAGCGAAGTGGCtaAACGCGGCGGTCTGTAAAACCGCTCTCTCTGAGTtCGGTGGTTCGAATCCACTGGCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna69 (1631500-1631419) Length: 82 bp
Type: Tyr Anticodon: GTA at 35-37 (1631466-1631464) Score: 64.08
Seq: GGAGGCCTAGCGAAGTGGCtaAACGCGGCGGTCTGTAAAACCGCTCTCTCTGAGTtCGGTGGTTCGAATCCACTGGCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna13 (563864-563936) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (563897-563899) Score: 86.40
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAGGtCACAGGTTCGAGCCCTGTATCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna23 (1680912-1680840) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (1680879-1680877) Score: 86.40
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAGGtCACAGGTTCGAGCCCTGTATCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna50 (1666463-1666391) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (1666430-1666428) Score: 86.40
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAGGtCACAGGTTCGAGCCCTGTATCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.