tRNAscan-SE Analysis of the Lactobacillus acidophilus NCFM Genome
|
| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna8 (415602-415674) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (415635-415637) Score: 82.28
Seq: GGGGGCTTAGCTCAGTTGGGAGAGCACCTGCTTTGCACGCAGGAGGtCATCGGTTCGAACCCGTTAGCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
chr.trna15 (419417-419490) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (419451-419453) Score: 71.31
Seq: GCGCCCTTAGCGCAACTGGAtAGAGTGTCTGACTACGAATCAGAAGGtTGAAGGTTCAAATCCTTCAGGGCGCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna52 (1904687-1904760) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (1904721-1904723) Score: 71.31
Seq: GCGCCCTTAGCGCAACTGGAtAGAGTGTCTGACTACGAATCAGAAGGtTGAAGGTTCAAATCCTTCAGGGCGCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna58 (691621-691550) Length: 72 bp
Type: Arg Anticodon: CCG at 34-36 (691588-691586) Score: 39.25
Seq: GGGTCCTTAGTGTAATGGAtCGCACGTAAGATTCCGGTTCTTAAAATCTGGGTTCGACTCCCAGGGGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna46 (606705-606777) Length: 73 bp
Type: Arg Anticodon: CCT at 35-37 (606739-606741) Score: 55.30
Seq: GACCCCGTAGTTCATCTGGAtAGAACAATGGTCTCCTAAACCGTAGAGGTGAGTTCGAATCTCACCGGGGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna50 (1326825-1326901) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (1326859-1326861) Score: 72.30
Seq: GGTCTGGTAGCTCAGCTGGAtAGAGCAACAGTCTTCTAAACTGTGGGtCGTGGGTTCGAATCTCACCCGGATCACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna2 (64127-64199) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (64160-64162) Score: 84.00
Seq: TCCGGCTTAGCTCAGTTGGTAGAGCGCTTGACTGTTAATCAAGATGtCGTCAGTTCGAGTCTGACAGCCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna36 (439119-439191) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (439152-439154) Score: 84.00
Seq: TCCGGCTTAGCTCAGTTGGTAGAGCGCTTGACTGTTAATCAAGATGtCGTCAGTTCGAGTCTGACAGCCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna54 (1627836-1627764) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (1627803-1627801) Score: 84.00
Seq: TCCGGCTTAGCTCAGTTGGTAGAGCGCTTGACTGTTAATCAAGATGtCGTCAGTTCGAGTCTGACAGCCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna20 (419853-419926) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (419887-419889) Score: 69.41
Seq: GGTCCATTGGAGCAGTGGTttATCTCGCCTCCCTGTCACGGAGGAGAtCGTGGGTTCAAATCCCACATGGACCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna28 (424244-424317) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (424278-424280) Score: 69.41
Seq: GGTCCATTGGAGCAGTGGTttATCTCGCCTCCCTGTCACGGAGGAGAtCGTGGGTTCAAATCCCACATGGACCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna43 (539031-539104) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (539065-539067) Score: 69.41
Seq: GGTCCATTGGAGCAGTGGTttATCTCGCCTCCCTGTCACGGAGGAGAtCGTGGGTTCAAATCCCACATGGACCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna34 (424748-424818) Length: 71 bp
Type: Cys Anticodon: GCA at 33-35 (424780-424782) Score: 67.23
Seq: GGCGGTGTAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTAAtCGTCGGTTCGAATCCGACCTCCGCCT
Str: >>>>>.>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<.<<<<<.
chr.trna48 (743116-743188) Length: 73 bp
Type: Gln Anticodon: CTG at 34-36 (743149-743151) Score: 57.85
Seq: TGAGATATAGCCAAATTGGTAAGGCACAGGATTCTGGTTCCTGGATgTTTGGGTTCGAGCCCCAATATCTCAA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna38 (497137-497208) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (497169-497171) Score: 62.43
Seq: TGGGTTATAGCCAAGTGGTAAGGCAATGGTTTTTGGTACCATCATgCGCTGGTTCGAATCCAGCTAACCCAA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna40 (500767-500838) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (500799-500801) Score: 62.43
Seq: TGGGTTATAGCCAAGTGGTAAGGCAATGGTTTTTGGTACCATCATgCGCTGGTTCGAATCCAGCTAACCCAA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna33 (424653-424724) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (424685-424687) Score: 69.84
Seq: TGGGATATAGCCAAGTGGTAAGGCATTAGACTTTGACTCTAACATgCGCTGGTTCGAATCCAGCTATCCCAA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna47 (743039-743110) Length: 72 bp
Type: Glu Anticodon: CTC at 34-36 (743072-743074) Score: 56.38
Seq: CGCCCGTTGGTCAAATGGTtAAGACGCTACCCTCTCAAGGTGGAGtTATGAGTTCAATTCTCGTACGGGTGA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna25 (423962-424033) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (423995-423997) Score: 63.77
Seq: GACCCGTTGGTCAAGTGGTtAAGACACGGCCCTTTCACGGCCGTAACATGGGTTCAAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna56 (1626756-1626685) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (1626723-1626721) Score: 63.77
Seq: GACCCGTTGGTCAAGTGGTtAAGACACGGCCCTTTCACGGCCGTAACATGGGTTCAAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna59 (203559-203489) Length: 71 bp
Type: Gly Anticodon: CCC at 33-35 (203527-203525) Score: 56.18
Seq: GCGGGTATAGTTAAATGGTAGAACGACAGCTTCCCAAGCTGTAGATGCGGGTTCGATTCACGCTATCCGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<.
chr.trna13 (419239-419310) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (419271-419273) Score: 79.21
Seq: GCGGAAGTAGTTCAGTGGTAGAACATCACCTTGCCATGGTGGGGGtCGCGGGTTCGAATCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna4 (275354-275428) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (275386-275388) Score: 89.12
Seq: GCGGAAGTAGTTCAGTGGTAGAACACGACCTTGCCATGGTCGGGGtCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna5 (275551-275625) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (275583-275585) Score: 89.12
Seq: GCGGAAGTAGTTCAGTGGTAGAACACGACCTTGCCATGGTCGGGGtCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna22 (420025-420095) Length: 71 bp
Type: Gly Anticodon: TCC at 33-35 (420057-420059) Score: 65.53
Seq: GCGGGTATAGTTTAGTGGTAAAACGAAAGCCTTCCAAGCTTTAGtCGCGAGTCCGATTCTCGTTACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna32 (424573-424648) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (424606-424608) Score: 57.92
Seq: GCGGAATTGGTGAAGGGGTtAACACACCGGTTTGTGGATCCGGCATaCATGGGTTCGAATCCCATATTCCGCCCTA
Str: >>>>>>>..>>>..........<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna44 (539111-539186) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (539144-539146) Score: 64.87
Seq: GCGGAATTGGTGAAGGGGTtAACACACTGGTTTGTGGATCCAGCATgCATGGGTTCGAATCCCATATTCCGCCCCA
Str: >>>>>>>..>>>..........<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna23 (420101-420175) Length: 75 bp
Type: Ile Anticodon: GAT at 36-38 (420136-420138) Score: 90.49
Seq: GGGCCTATAGCTCAGCTGGTttAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCAAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna7 (415471-415545) Length: 75 bp
Type: Ile Anticodon: GAT at 36-38 (415506-415508) Score: 90.49
Seq: GGGCCTATAGCTCAGCTGGTttAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCAAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna41 (514446-514533) Length: 88 bp
Type: Leu Anticodon: AAG at 34-36 (514479-514481) Score: 63.75
Seq: GCGGGCGTGGCGGAATGGCaGACGCGCAAGACTAAGGATCTTGTGATCGCTTTAGATCGTGGAAGTTCGAGTCTTCTCGCCCGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna35 (424856-424940) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (424890-424892) Score: 60.10
Seq: GGCGGTGTGGCGGAATTGGCaGACGCGTCAGACTCAAAATCTGGTGTCCATTTTGGACGTATCGGTTCGACCCCGATCACCGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna51 (1597744-1597827) Length: 84 bp
Type: Leu Anticodon: CAG at 35-37 (1597778-1597780) Score: 59.47
Seq: GCCCGCTTGGCGGAATTGGCaGACGCGCAGCGTTCAGGTCGCTGTTCAGGTGACTGAGTGAAGGTTCGAATCCTTTAGCGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna14 (419323-419408) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (419357-419359) Score: 63.67
Seq: GCCGGAGTGGCGGAATTGGTaGACGCACGGGACTTAAAATCCCGCGGTTGGTTTCAACCGTATCGGTTCGACTCCGATCCCCGGCA
Str: >>>>>.>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<.<<<<<.
chr.trna11 (419050-419131) Length: 82 bp
Type: Leu Anticodon: TAG at 35-37 (419084-419086) Score: 61.14
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGATTTAGGTTCTAGTGTTTTCGGACGTGTGGGTTCAAGTCCCACCACCCGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna60 (79776-79704) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (79743-79741) Score: 81.75
Seq: GGGTGGCTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGtCCAGGGTTCGATCCCCTGGCCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna61 (79528-79456) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (79495-79493) Score: 81.75
Seq: GGGTGGCTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGtCCAGGGTTCGATCCCCTGGCCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna10 (418965-419037) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (418998-419000) Score: 86.21
Seq: GAGTCGTTAGCTCAGTTGGTAGAGCAACGGACTTTTAATCCGTGGGtCGAGGGTTCAAGTCCCTCACGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna17 (419600-419673) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (419634-419636) Score: 73.74
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTCCGGTTCATACCCGGGAGGtCGAGGGTTCGATCCCCCCCGCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
chr.trna19 (419776-419849) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (419810-419812) Score: 76.76
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
chr.trna27 (424167-424240) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (424201-424203) Score: 76.76
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
chr.trna18 (419686-419759) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (419720-419722) Score: 86.96
Seq: GGACCTTTAGCTCAGTTGGTtAGAGCAGACGGCTCATAACCGTCTTGtCGTAGGTTCGAGTCCTACAAGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna21 (419933-420005) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (419966-419968) Score: 78.23
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGTGtCGGCGGTTCGATTCCGTCCCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.
chr.trna29 (424324-424399) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (424357-424359) Score: 78.85
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGTGtCGGCGGTTCGATTCCGTCCCGCGCCATCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<....
chr.trna6 (275660-275733) Length: 74 bp
Type: Pro Anticodon: CGG at 35-37 (275694-275696) Score: 77.50
Seq: CGGGAAATAGCTCAGTTtGGTAGAGCGCTACGTTCGGGACGTAGAGGtCGCGCGTTCGAATCGCGTTTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna16 (419496-419569) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (419530-419532) Score: 86.87
Seq: CGGGAAATGGCTCAGTTtGGTAGAGCACCTGGTTTGGGACCAGGGGGtCGCAGGTTCGAATCCTGTTTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna53 (1904770-1904843) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (1904804-1904806) Score: 86.87
Seq: CGGGAAATGGCTCAGTTtGGTAGAGCACCTGGTTTGGGACCAGGGGGtCGCAGGTTCGAATCCTGTTTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna49 (870429-870517) Length: 89 bp
Type: Ser Anticodon: CGA at 33-35 (870461-870463) Score: 66.92
Seq: GGAGTGTTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCAAGTTTTcCTTGGCGCGCAGGTTCAAATCCTGTACACTCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.....<<<<<...>>>>>.......<<<<<<<<<<<<.
chr.trna24 (420178-420267) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (420212-420214) Score: 52.88
Seq: GGAGACTTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGTGTAGATCGGGTTAtTCCGGTGCGAGGGTTCGAATCTCTCAGTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna55 (1627752-1627662) Length: 91 bp
Type: Ser Anticodon: GGA at 35-37 (1627718-1627716) Score: 58.85
Seq: GGAGTGTTGTCCGAGCGGCttAAGGAGCATGATTGGAAATCATGTATACGGGCTTAtACCTGTATCGAGGGTTCAAATCCCTCACACTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna42 (538938-539024) Length: 87 bp
Type: Ser Anticodon: TGA at 35-37 (538972-538974) Score: 62.76
Seq: GGAGGATTACCCAAGTGGCttAAGGGGACGGTTTTGAAAACCGTTAGGCGGTTcTGTCGCGCGTGGGTTCAAATCCCACATCCTCCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna26 (424071-424157) Length: 87 bp
Type: Ser Anticodon: TGA at 35-37 (424105-424107) Score: 65.76
Seq: GGAGGATTACCCAAGTGGCttAAGGGGACGGTTTTGAAAACCGTTAGGCGGTTaTGCCGCGCGTGGGTTCAAATCCCACATCCTCCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>...<<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna1 (19474-19546) Length: 73 bp
Type: Thr Anticodon: AGT at 34-36 (19507-19509) Score: 82.51
Seq: GCTGACTTAGCTCAGTTGGCAGAGCACGTCACTAGTAATGATGAGGtCGGAGGTTCGAATCCTCTAGTCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna37 (463546-463618) Length: 73 bp
Type: Thr Anticodon: CGT at 34-36 (463579-463581) Score: 79.24
Seq: GCTGAATTAGCTCAGTTGGTAGAGCATCTCCCTCGTAAAGAGAAGGtCGCCAGTTCGACTCTGGCATTCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna3 (189006-189078) Length: 73 bp
Type: Thr Anticodon: GGT at 34-36 (189039-189041) Score: 64.56
Seq: GCCGCTTTAGCTCAATAGGTAGAGCACCGCCGTGGTAAGGAGGAGGtTCCCAGTTCAAACCTGGGAAGCGGCT
Str: >>>>>>>..>>>>........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna12 (419156-419228) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (419189-419191) Score: 80.28
Seq: GCCGATTTAGCTCAGTTGGTAGAGCATCTGTCTTGTAAACAGGGGGtCGTACGTTCAAGTCGTATAATCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna31 (424490-424560) Length: 71 bp
Type: Trp Anticodon: CCA at 33-35 (424522-424524) Score: 45.48
Seq: AGGGATATCGTATAAAGGTAGTACATCGGTCTCCAAAACCGCTAGTGTGGGTTCAATTCCTACTATCCCTG
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna30 (424404-424485) Length: 82 bp
Type: Tyr Anticodon: GTA at 35-37 (424438-424440) Score: 63.66
Seq: GGAGGAGTAGCGAAGTGGCtaAACGCGGCGGTCTGTAAAACCGCTCTCTCTGAGTtCGGCGGTTCGAATCCACCCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>.>>.......<<.<<<<<<<<<.
chr.trna39 (500651-500732) Length: 82 bp
Type: Tyr Anticodon: GTA at 35-37 (500685-500687) Score: 63.66
Seq: GGAGGAGTAGCGAAGTGGCtaAACGCGGCGGTCTGTAAAACCGCTCTCTCTGAGTtCGGCGGTTCGAATCCACCCTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>.>>.......<<.<<<<<<<<<.
chr.trna45 (539191-539263) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (539224-539226) Score: 86.40
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAGGtCACAGGTTCGAGCCCTGTATCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna57 (1626679-1626607) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (1626646-1626644) Score: 86.40
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAGGtCACAGGTTCGAGCCCTGTATCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna9 (418890-418962) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (418923-418925) Score: 86.40
Seq: GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAGGtCACAGGTTCGAGCCCTGTATCCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.