tRNAscan-SE Analysis of the Lactobacillus acidophilus NCFM Genome |
| [Main Overview] [Secondary Structures] | [Analysis Notes] |
| [tRNAs by Isotype] [tRNAs by Locus] | [Run Options/Stats] | [tRNA Alignments][FASTA Seqs] | [Genome DB] [Genome Seq] |
| [BLAST] [Download] [Bugs/Requests] [Citation] [Legend] |
| [GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links] |
| Structurally Aligned tRNAs (by Isotype & Anticodon) |
Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGGGCTTAGCTCAGTTGGGAGAGCACCTGCTTTGCACGCAGGAG...........GtCATCGGTTCGAACCCGTTAGCCTCCA... chr.trna8-AlaTGC Sc: 82.28Arg tRNAs
>>>>>>>..>>.>..........<.<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCTTAGCGCAACTGGAtA.GAGTGTCTGACTACGAATCAGAAG...........GtTGAAGGTTCAAATCCTTCAGGGCGCA... chr.trna52-ArgACG Sc: 71.31 GCGCCCTTAGCGCAACTGGAtA.GAGTGTCTGACTACGAATCAGAAG...........GtTGAAGGTTCAAATCCTTCAGGGCGCA... chr.trna15-ArgACG Sc: 71.31 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCCTTAGTGTAAT.GGAtC.GCACGTAAGATTCCGGTTCTTAAA...........A.TCTGGGTTCGACTCCCAGGGGACCCA... chr.trna58-ArgCCG Sc: 39.25 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GACCCCGTAGTTCATCTGGAtA.GAACAATGGTCTCCTAAACCGTAG...........A.GGTGAGTTCGAATCTCACCGGGGTCA... chr.trna46-ArgCCT Sc: 55.30 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCTGGTAGCTCAGCTGGAtA.GAGCAACAGTCTTCTAAACTGTGG...........GtCGTGGGTTCGAATCTCACCCGGATCACTA chr.trna50-ArgTCT Sc: 72.30Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGGCTTAGCTCAGTTGGTAGAGCGCTTGACTGTTAATCAAGAT...........GtCGTCAGTTCGAGTCTGACAGCCGGAG... chr.trna54-AsnGTT Sc: 84.00 TCCGGCTTAGCTCAGTTGGTAGAGCGCTTGACTGTTAATCAAGAT...........GtCGTCAGTTCGAGTCTGACAGCCGGAG... chr.trna36-AsnGTT Sc: 84.00 TCCGGCTTAGCTCAGTTGGTAGAGCGCTTGACTGTTAATCAAGAT...........GtCGTCAGTTCGAGTCTGACAGCCGGAG... chr.trna2-AsnGTT Sc: 84.00Asp tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCCATTGGAGCAGTGGTttA.TCTCGCCTCCCTGTCACGGAGGAG...........AtCGTGGGTTCAAATCCCACATGGACCG... chr.trna43-AspGTC Sc: 69.41 GGTCCATTGGAGCAGTGGTttA.TCTCGCCTCCCTGTCACGGAGGAG...........AtCGTGGGTTCAAATCCCACATGGACCG... chr.trna28-AspGTC Sc: 69.41 GGTCCATTGGAGCAGTGGTttA.TCTCGCCTCCCTGTCACGGAGGAG...........AtCGTGGGTTCAAATCCCACATGGACCG... chr.trna20-AspGTC Sc: 69.41Cys tRNAs
>>>>>.>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<.<<<<<.... GGCGGTGTAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTA...........AtCGTCGGTTCGAATCCGAC.CTCCGCCT... chr.trna34-CysGCA Sc: 67.23Gln tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGAGATATAGCCAAATTGGTA.AGGCACAGGATTCTGGTTCCTGGA...........TgTTTGGGTTCGAGCCCCAATATCTCAA... chr.trna48-GlnCTG Sc: 57.85 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGATATAGCCAAGT.GGTA.AGGCATTAGACTTTGACTCTAACA...........TgCGCTGGTTCGAATCCAGCTATCCCAA... chr.trna33-GlnTTG Sc: 69.84 TGGGTTATAGCCAAGT.GGTA.AGGCAATGGTTTTTGGTACCATCA...........TgCGCTGGTTCGAATCCAGCTAACCCAA... chr.trna40-GlnTTG Sc: 62.43 TGGGTTATAGCCAAGT.GGTA.AGGCAATGGTTTTTGGTACCATCA...........TgCGCTGGTTCGAATCCAGCTAACCCAA... chr.trna38-GlnTTG Sc: 62.43Glu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CGCCCGTTGGTCAAATGGTtA.AGACGCTACCCTCTCAAGGTGGA............GtTATGAGTTCAATTCTCGT.ACGGGTGA... chr.trna47-GluCTC Sc: 56.38 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GACCCGTTGGTCAAGTGGTtA.AGACACGGCCCTTTCACGGCCGTA...........A.CATGGGTTCAAATCCCGT.ACGGGTCA... chr.trna56-GluTTC Sc: 63.77 GACCCGTTGGTCAAGTGGTtA.AGACACGGCCCTTTCACGGCCGTA...........A.CATGGGTTCAAATCCCGT.ACGGGTCA... chr.trna25-GluTTC Sc: 63.77Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGAAGTAGTTCAGTGGTA.GAACACGACCTTGCCATGGTCGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA chr.trna5-GlyGCC Sc: 89.12 GCGGAAGTAGTTCAGTGGTA.GAACACGACCTTGCCATGGTCGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCTCCA chr.trna4-GlyGCC Sc: 89.12 GCGGAAGTAGTTCAGTGGTA.GAACATCACCTTGCCATGGTGGGG...........GtCGCGGGTTCGAATCCCGT.CTTCCGCT... chr.trna13-GlyGCC Sc: 79.21 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>.>.......<.<<<.<<<<<<<.... GCGGGTATAGTTAAATGGTA.GAACGACAGCTTCCCAAGCTGTAG...........A.TGCGGGTTCGATTCACGC.TATCCGCT... chr.trna59-GlyCCC Sc: 56.18 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGTATAGTTTAGTGGTA.AAACGAAAGCCTTCCAAGCTTTA............GtCGCGAGTCCGATTCTCGT.TACCCGCT... chr.trna22-GlyTCC Sc: 65.53His tRNAs
>>>>>>>..>>>...........<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGAATTGGTGAAGGGGTtA.ACACACTGGTTTGTGGATCCAGCA...........TgCATGGGTTCGAATCCCATATTCCGCCCCA chr.trna44-HisGTG Sc: 64.87 GCGGAATTGGTGAAGGGGTtA.ACACACCGGTTTGTGGATCCGGCA...........TaCATGGGTTCGAATCCCATATTCCGCCCTA chr.trna32-HisGTG Sc: 57.92Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGCTGGTttAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCAAGTCCATTTAGGCCCA... chr.trna7-IleGAT Sc: 90.49 GGGCCTATAGCTCAGCTGGTttAGAGCGCACGCCTGATAAGCGTGAG...........GtCGATGGTTCAAGTCCATTTAGGCCCA... chr.trna23-IleGAT Sc: 90.49Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGCGTGGCGGAAT.GGCaG.ACGCGCAAGACTAAGGATCTTGTGATCGCT.......TTAGATCGTGGAAGTTCGAGTCTTCT.CGCCCGCACCA chr.trna41-LeuAAG Sc: 63.75 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.>.........<.<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCGCTTGGCGGAATTGGCaG.ACGCGCAGCGTTCAGGTCGCTGTTCAGGT.........GACTGAGTGAAGGTTCGAATCCTTT.AGCGGGCA... chr.trna51-LeuCAG Sc: 59.47 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTGGCGGAATTGGCaG.ACGCGCTAGATTTAGGTTCTAGTGTTTT...........CGGACGTGTGGGTTCAAGTCCCAC.CACCCGTA... chr.trna11-LeuTAG Sc: 61.14 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>...........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GGCGGTGTGGCGGAATTGGCaG.ACGCGTCAGACTCAAAATCTGGTGTCCA..TTT......TGGACGTATCGGTTCGACCCCGAT.CACCGCTA... chr.trna35-LeuCAA Sc: 60.10 >>>>>.>..>>>............<<<.>>>>>.......<<<<<.>>>>>...........<<<<<..>>>>>.......<<<<<.<.<<<<<.... GCCGGAGTGGCGGAATTGGTaG.ACGCACGGGACTTAAAATCCCGCGGTTG..GTTT.....CAACCGTATCGGTTCGACTCCGAT.CCCCGGCA... chr.trna14-LeuTAA Sc: 63.67Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGGCTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGG...........GtCCAGGGTTCGATCCCCTGGCCACCCA... chr.trna61-LysCTT Sc: 81.75 GGGTGGCTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGG...........GtCCAGGGTTCGATCCCCTGGCCACCCA... chr.trna60-LysCTT Sc: 81.75 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGTCGTTAGCTCAGTTGGTAGAGCAACGGACTTTTAATCCGTGG...........GtCGAGGGTTCAAGTCCCTCACGGCTCA... chr.trna10-LysTTT Sc: 86.21Met tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGACCTTTAGCTCAGTT.GGTtAGAGCAGACGGCTCATAACCGTCTT...........GtCGTAGGTTCGAGTCCTACAAGGTCCA... chr.trna18-MetCAT Sc: 86.96 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCTCCCGCAA... chr.trna27-MetCAT Sc: 76.76 CGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCTCCCGCAA... chr.trna19-MetCAT Sc: 76.76 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGCGGTGTAGCTCAGCT.GGCtAGAGCGTCCGGTTCATACCCGGGAG...........GtCGAGGGTTCGATCCCCCCCGCCGCTA... chr.trna17-MetCAT Sc: 73.74Phe tRNAs
>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<.... GGCTCGGTAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGT...........GtCGGCGGTTCGATTCCGTCCCGCGCCATCA chr.trna29-PheGAA Sc: 78.85 GGCTCGGTAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGT...........GtCGGCGGTTCGATTCCGTCCCGCGCCA... chr.trna21-PheGAA Sc: 78.23Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGAAATAGCTCAGTTtGGTAGAGCGCTACGTTCGGGACGTAGAG...........GtCGCGCGTTCGAATCGCGTTTTCCCGA... chr.trna6-ProCGG Sc: 77.50 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGAAATGGCTCAGTTtGGTAGAGCACCTGGTTTGGGACCAGGGG...........GtCGCAGGTTCGAATCCTGTTTTCCCGA... chr.trna53-ProTGG Sc: 86.87 CGGGAAATGGCTCAGTTtGGTAGAGCACCTGGTTTGGGACCAGGGG...........GtCGCAGGTTCGAATCCTGTTTTCCCGA... chr.trna16-ProTGG Sc: 86.87SeC tRNAs
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>...........<<<<<<..>>>>>.......<<<<<.<<<<<<<.... GGAGTGTTGTCCGAGCGGCttA.AGGAGCATGATTGGAAATCATGTATACGGGCTTA.t....ACCTGTATCGAGGGTTCAAATCCCTC.ACACTCCG... chr.trna55-SerGGA Sc: 58.85 >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.........<<<<<....>>>>>.......<<<<<.<<<<<<<.... GGAGTGTTGGCAGAGTGGT..A.ATGCACCGGACTCGAAATCCGGCGAACCAAGTTTTc....CTTGGCG.CGCAGGTTCAAATCCTGT.ACACTCCT... chr.trna49-SerCGA Sc: 66.92 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>>...........<<<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGATTACCCAAGTGGCttA.AGGGGACGGTTTTGAAAACCGTTAGGCGGTT....a....TGCCGCG.CGTGGGTTCAAATCCCAC.ATCCTCCT... chr.trna26-SerTGA Sc: 65.76 GGAGGATTACCCAAGTGGCttA.AGGGGACGGTTTTGAAAACCGTTAGGCGGTT....c....TGTCGCG.CGTGGGTTCAAATCCCAC.ATCCTCCT... chr.trna42-SerTGA Sc: 62.76 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>>>.........<<<<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGACTTACTCAAGTGGCtgA.AGAGGCGCCCCTGCTAAGGGTGTAGATCGGGTTA.t....TCCGGTG.CGAGGGTTCGAATCTCTC.AGTCTCCG... chr.trna24-SerGCT Sc: 52.88Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGACTTAGCTCAGTTGGCAGAGCACGTCACTAGTAATGATGAG...........GtCGGAGGTTCGAATCCTCTAGTCAGCA... chr.trna1-ThrAGT Sc: 82.51 >>>>>>>..>>>>........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<.... GCCGCTTTAGCTCAATAGGTAGAGCACCGCCGTGGTAAGGAGGAG...........GtTCCCAGTTCAAACCTGGGAAGCGGCT... chr.trna3-ThrGGT Sc: 64.56 >>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGAATTAGCTCAGTTGGTAGAGCATCTCCCTCGTAAAGAGAAG...........GtCGCCAGTTCGACTCTGGCATTCAGCA... chr.trna37-ThrCGT Sc: 79.24 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGATTTAGCTCAGTTGGTAGAGCATCTGTCTTGTAAACAGGGG...........GtCGTACGTTCAAGTCGTATAATCGGCA... chr.trna12-ThrTGT Sc: 80.28Trp tRNAs
>>>>>>>..>>>>........<<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGATATCGTATAAAGGTA.GTACATCGGTCTCCAAAACCGCTA...........GTGTGGGTTCAATTCCTACTATCCCTG... chr.trna31-TrpCCA Sc: 45.48Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>.>>.......<<.<<.<<<<<<<.... GGAGGAGTAGCGAAGTGGCtaA.ACGCGGCGGTCTGTAAAACCGCTCTCTCT.....GAGTtCGGCGGTTCGAATCCACC.CTCCTCCA... chr.trna39-TyrGTA Sc: 63.66 GGAGGAGTAGCGAAGTGGCtaA.ACGCGGCGGTCTGTAAAACCGCTCTCTCT.....GAGTtCGGCGGTTCGAATCCACC.CTCCTCCA... chr.trna30-TyrGTA Sc: 63.66Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAG...........GtCACAGGTTCGAGCCCTGTATCCTCCA... chr.trna9-ValTAC Sc: 86.40 GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAG...........GtCACAGGTTCGAGCCCTGTATCCTCCA... chr.trna57-ValTAC Sc: 86.40 GGAGGATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAG...........GtCACAGGTTCGAGCCCTGTATCCTCCA... chr.trna45-ValTAC Sc: 86.40
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.