tRNAscan-SE Analysis of the Lactobacillus acidophilus NCFM Genome


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tRNA Gene Summary




tRNAs Decoding Standard 20 AA61
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs61


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypeAnticodon CountTotal
AlaAGC
 
GGC
 
CGC
 
TGC
1
1
GlyACC
 
GCC
3
CCC
1
TCC
1
5
ProAGG
 
GGG
 
CGG
1
TGG
2
3
ThrAGT
1
GGT
1
CGT
1
TGT
1
4
ValAAC
 
GAC
 
CAC
 
TAC
3
3

Six Box tRNA Sets

IsotypeAnticodon CountTotal
SerAGA
 
GGA
1
CGA
1
TGA
2
ACT
 
GCT
1
 
 
 
 
5
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
5
LeuAAG
1
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5

Two Box tRNA Sets

IsotypeAnticodon CountTotal
PheAAA
 
GAA
2
 
 
 
 
2
AsnATT
 
GTT
3
 
 
 
 
3
Lys 
 
 
 
CTT
2
TTT
1
3
AspATC
 
GTC
3
 
 
 
 
3
Glu 
 
 
 
CTC
1
TTC
2
3
HisATG
 
GTG
2
 
 
 
 
2
Gln 
 
 
 
CTG
1
TTG
3
4

Two Box & Other tRNA Sets

IsotypeAnticodon CountTotal
IleAAT
 
GAT
2
 
 
TAT
 
2
Met 
 
 
 
CAT
4
 
 
4
TyrATA
 
GTA
2
 
 
 
 
2
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
1
 
 
 
 
1
Trp 
 
 
 
CCA
1
 
 
1
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe, Please email lowe@soe.ucsc.edu with any questions, comments, or corrections.