| Predicted tRNA Secondary Structures |
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Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna11 (1-76) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (34-36) Score: 91.86
Seq: GGGCCCGTAGCTCAGCTGGAAGAGCGCCGCCCTCGCAAGGCGGAGGtCCCGGGTTCAAATCCCGGCGGGTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna42 (1-77) Length: 77 bp
Type: Ala Anticodon: GGC at 35-37 (35-37) Score: 91.16
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCCCGGTTGGCAACCGGGAGGtCCCGGGTTCAAGTCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna32 (1-77) Length: 77 bp
Type: Ala Anticodon: TGC at 35-37 (35-37) Score: 92.62
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGCTTGCACCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: [AAGGGAGCCCAGCCGAC]GGGCCGGTAGCTCAGCCTGGAAGAGCGCTCGGCTTGCACCCGAGAGGTCCCGGGTTCAAATCCCGGCCGGTCCACCA
chr.trna17 (1-77) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (35-37) Score: 87.90
Seq: GGCCCCGTAGCTCAGCCaGGAAGAGCGCGGGCCTCCGGAGCCCGTGGtCCCGGGTTCAAGTCCCGGCGGGGCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna16 (1-97) Length: 97 bp
Type: Arg Anticodon: CCT at 36-38 (36-38) Score: 84.61
Possible intron: 40-58 (40-58)
Seq: GGCCCCGTAGCTCAGCCaGGAcAGAGCGCCGGCCTCCTAtcccgtgcggggttgggaaAGCCGGTGGtCCGGGGTTCAAATCCCCGCGGGGCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>..........................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna21 (1-79) Length: 79 bp
Type: Arg Anticodon: GCG at 37-39 (37-39) Score: 92.54
Seq: GGCCCCGTGGCCTAGCCtGGActAGGGCGCCGGCCTGCGGAGCCGGAGGtCCCGGGTTCAAATCCCGGCGGGGCCGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna3 (1-77) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (35-37) Score: 91.62
Seq: GCCCCCGTAGCTCAGCCaGGAAGAGCGCGGGCCTTCGGAGCCCGTGGtCGCGGGTTCAAATCCCGCCGGGGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna7 (1-78) Length: 78 bp
Type: Arg Anticodon: TCT at 36-38 (36-38) Score: 89.15
Seq: GGCCCCGTCGCCTAGCCaGGAtAGGGCGCCGGCCTTCTAAGCCGGTAGtCCCGGGTTCAAATCCCGGCGGGGCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna36 (1-76) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (34-36) Score: 81.37
Seq: GCCGGGGTAGCTCAGCTGGTAGAGCGCCGGGCTGTTAACCCGGTGGcCGGAGGTTCGAGTCCTCCCCCCGGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna45 (1-78) Length: 78 bp
Type: Asp Anticodon: GTC at 37-39 (37-39) Score: 84.07
Seq: GCCGCGGTAGTATAGCCtGGCccAGTATGCGGGCCTGTCAAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna2 (1-105) Length: 105 bp
Type: Cys Anticodon: GCA at 35-37 (35-37) Score: 58.88
Possible intron: 39-65 (39-65)
Seq: GCCGGGGTGCCCGAGCGGCctAAGGGGTCGGGCTGCAGtggagcgttggccaccgcccgttggatACCCGATCTctCCCGGGTTCGAATCCCGGCCCCGGCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>..................................<<<<<......>>>>>.......<<<<<<<<<<<<....
chr.trna39 (1-76) Length: 76 bp
Type: Gln Anticodon: CTG at 35-37 (35-37) Score: 69.66
Seq: AGCCGGGTCGTCTAGCGGCcaAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAATCCCCGCCCGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna20 (1-76) Length: 76 bp
Type: Gln Anticodon: TTG at 35-37 (35-37) Score: 70.22
Seq: AGCCGGGTCGTCTAGCGGCcaAGGATGCGGGGCTTTGGCCCCCGTGACCGGGGTTCGAATCCCCGCCCGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna33 (1-78) Length: 78 bp
Type: Glu Anticodon: CTC at 37-39 (37-39) Score: 82.65
Seq: GCCGCCGTAGTATAGTCcGGCcaAGTATGCGGGCCTCTCAAGCCCGTGACCCGGGTTCAAATCCCGGCGGCGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna10 (1-78) Length: 78 bp
Type: Glu Anticodon: TTC at 37-39 (37-39) Score: 83.85
Seq: GCCGCCGTAGTATAGCCcGGCcaAGTATGCGGGCCTTTCAAGCCCGTGACCCGGGTTCAAATCCCGGCGGCGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna35 (1-79) Length: 79 bp
Type: Gly Anticodon: CCC at 37-39 (37-39) Score: 89.36
Seq: GCGGCGGTCGTCTAGCCtGGActAGGATGCCGGCCTCCCAAGCCGGTGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna5 (1-79) Length: 79 bp
Type: Gly Anticodon: GCC at 37-39 (37-39) Score: 88.15
Seq: GCGGCGGTCGTCTAGCCtGGActAGGACGCCGGCCTGCCACGCCGGAGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna22 (1-79) Length: 79 bp
Type: Gly Anticodon: TCC at 37-39 (37-39) Score: 89.92
Seq: GCGGCGGTCGTCTAGCCtGGActAGGATGCCGGCCTTCCAAGCCGGTGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna43 (1-99) Length: 99 bp
Type: His Anticodon: GTG at 35-37 (35-37) Score: 77.89
Possible intron: 39-60 (39-60)
Seq: GCCGCCGTAGCTCAGCTGGTtAGAGCGCGGGACTGTGGaggcccggctgaggccgcggagATCCCGAGGtCCCGGGTTCAAATCCCGGCGGCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna19 (1-74) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (35-37) Score: 90.23
Seq: GGGCCCGTAGCTTAGCCcGGCAGAGCGCCCGGCTGATAACCGGGAGGcCGGGGGTTCAAATCCCCCCGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna24 (1-88) Length: 88 bp
Type: Leu Anticodon: CAA at 37-39 (37-39) Score: 77.04
Seq: GCGGGGGTGCCCGAGCCaGGTcgAAGGGGGCGGGCTCAAGACCCGCTGGCGTAGGCCGgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna14 (1-88) Length: 88 bp
Type: Leu Anticodon: CAG at 37-39 (37-39) Score: 79.97
Seq: GCGGGGGTGCCCGAGCCtGGCcaAAGGGGTCGGGCTCAGGACCCGATGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna27 (1-88) Length: 88 bp
Type: Leu Anticodon: GAG at 37-39 (37-39) Score: 79.89
Seq: GCGGGGGTGCCCGAGCCtGGCcaAAGGGGTCGGGCTGAGGACCCGATGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna15 (1-87) Length: 87 bp
Type: Leu Anticodon: TAA at 36-38 (36-38) Score: 78.72
Seq: GCCGGGGTGCCCGAGCCcGGAaAAGGGGGCGGGCTTAAGACCCGCTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCGGCACCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna12 (1-88) Length: 88 bp
Type: Leu Anticodon: TAG at 37-39 (37-39) Score: 80.91
Seq: GCCGGGGTGCCCGAGCCtGGCcaAAGGGGTCGGGCTTAGGACCCGATGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCGGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna34 (1-77) Length: 77 bp
Type: Lys Anticodon: CTT at 35-37 (35-37) Score: 93.13
Seq: GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAACCCGTAGGtCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAG[AGGCGGGGCTTGGCCCGTTTCCCGCCGCGGAA]GTCCCGGGTTCAAATCCCGGCGGGCCCGCCA
chr.trna9 (1-77) Length: 77 bp
Type: Lys Anticodon: CTT at 35-37 (35-37) Score: 93.13
Seq: GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAACCCGTAGGtCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAG[AGGCGGGGCTTGGCCCGTTTCCCGCCGCGGAA]GTCCCGGGTTCAAATCCCGGCGGGCCCGCCA
chr.trna40 (1-77) Length: 77 bp
Type: Lys Anticodon: TTT at 35-37 (35-37) Score: 95.18
Seq: GGGCCCGTAGCTCAGCCaGGAAGAGCGCCGGGCTTTTAACCCGGTGGtCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna38 (1-77) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (35-37) Score: 82.16
Seq: AGCGGGGTAGGGCAGCCtGGTAGCCCGCGGGGCTCATAACCCCGAGGtCGGTGGTTCAAATCCACCCCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna1 (1-77) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (35-37) Score: 94.73
Seq: GGGCCCGTAGCTCAGCCaGGCAGAGCGCCGGGCTCATAACCCGGTGGtCCGGGGTTCGAATCCCCGCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna37 (1-110) Length: 110 bp
Type: Met Anticodon: CAT at 35-37 (35-37) Score: 76.75
Possible intron: 39-71 (39-71)
Seq: GCCGCCGTAGCTCAGCCGGGcAGAGCGCCGGGCCCATAaggtccggtacgcgagaaccgaaggcttgggagACCCGGTGGcCCGGGGTTCAAATCCCCGCGGCGGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>........................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna30 (1-72) Length: 72 bp
Type: Phe Anticodon: GAA at 33-35 (33-35) Score: 82.59
Seq: GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGTCGtCCGGGGTTCGAATCCCCGCGGCGGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna8 (1-79) Length: 79 bp
Type: Pro Anticodon: CGG at 37-39 (37-39) Score: 79.03
Seq: GGGCCCGTCGTCTAGCCtGGActAGGATGCGGGGTTCGGGTCCCCGTGGcCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTCGTCTAGCCTGGACTAGGATGCGGGGT[ACGCCGGCGAGCCCCGCGACGGGTCCGGCGCCCGAC]TCGGGTCCCCGTGGCCCCGGGTTCAAATCCCGGCGGGCCCACCA
chr.trna6 (1-102) Length: 102 bp
Type: Pro Anticodon: GGG at 35-37 (35-37) Score: 73.69
Possible intron: 39-63 (39-63)
Seq: GGGGCCGTCGTCTAGCTtGGTAGGATGCCAGCCTGGGGagggaaatccccgcgtcccccggatCGCTGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna28 (1-74) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (35-37) Score: 82.28
Seq: GGGGCCGTCGTCTAGCTtGGTAGGATGCGGGGCTTGGGCCCCCGTGGtCCGGGGTTCAAATCCCCGCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna25 (1-117) Length: 117 bp
Type: Ser Anticodon: CGA at 35-37 (35-37) Score: 56.46
Possible intron: 39-65 (39-65)
Seq: GCCGGGGTGCCCGAGCGGCccAAGGGGGTGGGCTCGAGacctccagcgcccgaagcgaccgagagACCCACTGCCCCAATCAGGGGCGCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>..................................<<<<<...>>>......<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna4 (1-88) Length: 88 bp
Type: Ser Anticodon: GCT at 36-38 (36-38) Score: 82.90
Seq: GCCGGGGTCGCCTAGCCtGGCcAGGGCGCCGGCCTGCTAAGCCGGTGGGGGAAAcCCCGCGCGGGTTCAAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>.....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna46 (1-89) Length: 89 bp
Type: Ser Anticodon: GGA at 35-37 (35-37) Score: 67.03
Seq: GCCGGGGTGCCCGAGCGGCccAAGGGGGTGGCCTGGAGAGCCACTCCCCCTGATGGGGGgCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna18 (1-87) Length: 87 bp
Type: Ser Anticodon: TGA at 35-37 (35-37) Score: 76.89
Seq: GCCGGGGTGCCCGAGCGGCccAAGGGGCCGGCCTTGAGAGCCGGTGGGGGAAAcCCCGCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna47 (1-91) Length: 91 bp
Type: Thr Anticodon: CGT at 35-37 (35-37) Score: 86.51
Possible intron: 39-52 (39-52)
Seq: GCCGCCGTAGCTCAGCCcGGCAGAGCGCCGGCCTCGTAcggccctccgagagAGCCGGTGGtCGCGGGTTCAAATCCCGCCGGCGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna13 (1-76) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (34-36) Score: 88.78
Seq: GCCGCCGTAGCTCAGCCGGCAGAGCGCCGCCCTGGTAAGGCGGAGGtCCCGGGTTCAAGTCCCGGCGGCGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna41 (1-105) Length: 105 bp
Type: Thr Anticodon: TGT at 34-36 (34-36) Score: 82.22
Possible intron: 38-66 (38-66)
Seq: GCCGCCGTAGCTCAGCTGGCAGAGCGCCGGCCTTGTAtccggtacctctgggagtaccggccggagAGCCGGTGGtCGCGGGTTCAAATCCCGCCGGCGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>....................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna26 (1-148) Length: 148 bp
Type: Trp Anticodon: CCA at 35-37 (35-37) Score: 76.18
Possible intron: 39-109 (39-109)
Seq: GGGCCCGTAGCTCAGCCaGGCAGAGCGGCGGGCTCCAGacgaaatctacgggtctggaagagccgcgaggcgatgatcgcggtctggagcggtgacccgtgtaggagagACCCGTAGGtCGGGGGTTCAAATCCCCCCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..............................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna44 (1-145) Length: 145 bp
Type: Tyr Anticodon: GTA at 33-35 (33-35) Score: 64.52
Possible intron: 37-106 (37-106)
Seq: CCCGCCGTAGCTCAGCGGAAGAGCGCCCGGCTGTAGggccctccaggcccgcccccggacccgaagggcccttaggcccgcgggatgagggggcgccggcccagacACCGGGTGGtCCGGGGTTCGAATCCCCGCGGCGGGACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.............................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna23 (1-77) Length: 77 bp
Type: Val Anticodon: CAC at 35-37 (35-37) Score: 82.47
Seq: GGGGCCGTCGTCTAGCCcGGAAGGACGCCGCCCTCACACGGCGGTAGtCCGGGGTTCAAATCCCCGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna31 (1-77) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (35-37) Score: 82.39
Seq: GGGGCCGTCGTCTAGCCcGGAAGGACGCCGCCCTGACACGGCGGTAGtCCGGGGTTCAAATCCCCGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna29 (1-93) Length: 93 bp
Type: Val Anticodon: TAC at 35-37 (35-37) Score: 77.00
Possible intron: 39-54 (39-54)
Seq: GGGGCCGTCGTCTAGCCcGGAAGGACGCCGCCCTTACGagccctgagctgggagAGGCGGTAGtCCGGGGTTCAAATCCCCGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<....
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