>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Ignicoccus hospitalis KIN4 I

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 11 734819 734894 View Ala CGC acccctcccc cttccaaaag 0 0 91.86 81.25 10.61   chr 42 352603 352527 View Ala GGC ggcgcgaggt cccttacaaa 0 0 91.16 80.00 11.16   chr 32 1168364 1168271 View Ala TGC tataaggtag gcctctccca 0 0 92.62 79.88 12.74     chr 17 1146618 1146694 View Arg CCG agttgcccgg ccccgcgtat 0 0 87.90 76.50 11.40   chr 16 1134528 1134624 View Arg CCT aacgggggtt cggcctcgcc 1134567 1134585 84.61 73.58 11.03   chr 21 1289353 1289431 View Arg GCG gctcaccgag cgaccagaca 0 0 92.54 83.79 8.75   chr 3 87386 87462 View Arg TCG ccagcgcccg ctcgaaagct 0 0 91.62 80.12 11.50   chr 7 498947 499024 View Arg TCT ggacccggag cccccgtcgc 0 0 89.15 80.40 8.75     chr 36 882007 881932 View Asn GTT ctcccccgga caacaatttt 0 0 81.37 64.14 17.23     chr 45 153641 153564 View Asp GTC cgcgggaagt cacttccctc 0 0 84.07 69.97 14.10     chr 2 56438 56542 View Cys GCA gactgatgga cctaccatca 56476 56502 58.88 39.69 19.19     chr 39 500985 500910 View Gln CTG agggtcccgg caagctccca 0 0 69.66 50.30 19.36   chr 20 1268214 1268289 View Gln TTG cagaacccgg cttatccatt 0 0 70.22 50.86 19.36     chr 33 1150195 1150118 View Glu CTC ctcggagagc cacttaccca 0 0 82.65 68.45 14.20   chr 10 702165 702242 View Glu TTC tggccggagg aaacctcaaa 0 0 83.85 69.65 14.20     chr 35 1030645 1030567 View Gly CCC tccggaggct aaggccctcc 0 0 89.36 79.48 9.88   chr 5 289795 289873 View Gly GCC cctggaggct accctcctct 0 0 88.15 78.27 9.88   chr 22 1290865 1290787 View Gly TCC cgccccccgg aaggcccttc 0 0 89.92 80.04 9.88     chr 43 220298 220200 View His GTG ccggaagctg ccaaagcctc 220260 220239 77.89 65.66 12.23     chr 19 1250644 1250717 View Ile GAT caccttcggc ctaaacctcc 0 0 90.23 77.73 12.50     chr 24 1266904 1266817 View Leu CAA gcactgtgga cgcccccgtt 0 0 77.04 55.13 21.91   chr 14 1000816 1000903 View Leu CAG ccggagcctc accctctcgc 0 0 79.97 59.07 20.90   chr 27 1219549 1219462 View Leu GAG acggagcctc gcctttcctc 0 0 79.89 58.99 20.90   chr 15 1069318 1069404 View Leu TAA tggggtcgga cctaaaggcc 0 0 78.72 56.47 22.25   chr 12 882087 882174 View Leu TAG cgtcccccga aggagctccc 0 0 80.91 59.66 21.25     chr 34 1057036 1056928 View Lys CTT cccacggagc cacggcggcc 0 0 93.13 83.49 9.64   chr 9 557836 557944 View Lys CTT cccacggagc cacggcggcc 0 0 93.13 83.49 9.64   chr 40 468256 468180 View Lys TTT ccccacgccc cacgcggaag 0 0 95.18 85.67 9.51     chr 38 527572 527496 View Met CAT ggggagacct cgcggggccc 0 0 82.16 55.91 26.25   chr 1 3936 4012 View Met CAT ggaggcctgc ccccttcacg 0 0 94.73 83.60 11.13   chr 37 868263 868154 View Met CAT tctccggaga cccaaacctc 868225 868193 76.75 64.81 11.94     chr 30 1180979 1180908 View Phe GAA ccacggagga catcgacccg 0 0 82.59 68.39 14.20     chr 8 539363 539477 View Pro CGG gacggcgaga ctcaaaactc 0 0 79.03 67.05 11.98   chr 6 314236 314337 View Pro GGG gcccgggtcc cccctcaaac 314274 314298 73.69 60.34 13.35   chr 28 1207633 1207560 View Pro TGG ggtgccggaa cctaaagccc 0 0 82.28 68.00 14.28     chr 25 1252098 1251982 View Ser CGA agctcacaac cgagttgacc 1252060 1252034 56.46 36.20 20.26   chr 4 152550 152637 View Ser GCT atgccccgga tccttcccgc 0 0 82.90 64.42 18.48   chr 46 62894 62806 View Ser GGA accctagctc gaccttaaaa 0 0 67.03 42.27 24.76   chr 18 1245035 1245121 View Ser TGA ctcctctacc gagtcgcacg 0 0 76.89 52.39 24.50     chr 47 2096 2006 View Thr CGT cagccggcgg catcttaatc 2058 2045 86.51 76.55 9.96   chr 13 949437 949512 View Thr GGT cccggaaggg cgctctaccc 0 0 88.78 77.09 11.69   chr 41 389420 389316 View Thr TGT gcctctcagg cccctcgtcg 389383 389355 82.22 72.26 9.96     chr 26 1229145 1228998 View Trp CCA gaaatctggt cacccgcgag 1229107 1229037 76.18 64.82 11.36     chr 44 169708 169564 View Tyr GTA tcggcggcag aaaccccggc 169672 169603 64.52 46.28 18.24     chr 23 1276107 1276031 View Val CAC accggggttc cgcgttcctc 0 0 82.47 69.03 13.44   chr 31 1180891 1180815 View Val GAC cccggtcttc cccccctaaa 0 0 82.39 68.95 13.44   chr 29 1192213 1192121 View Val TAC cggaggcttc cacgaaattt 1192175 1192160 77.00 63.56 13.44   Note: Only introns located between position 37 and 38 are listed in the table above.

---

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.