tRNAscan-SE Analysis of the Idiomarina loihiensis L2TR Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna32 (1903565-1903490)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1903532-1903530)	Score: 86.51
Seq: GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (2752216-2752141)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (2752183-2752181)	Score: 93.85
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (2435875-2435800)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (2435842-2435840)	Score: 93.85
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (2027063-2026988)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (2027030-2027028)	Score: 93.85
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna43 (1266353-1266278)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1266320-1266318)	Score: 93.85
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna38 (1869281-1869205)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1869247-1869245)	Score: 83.56
Seq: GCGCTCGTAGCTCAACTGGAtAGAGTACCTGGCTACGAACCAGGCGGtTGGAGGTTCGAGTCCTCCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (1869379-1869303)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1869345-1869343)	Score: 87.36
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCGGtCGGAGGTTCGAATCCTCCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (51807-51884)	Length: 78 bp
Type: Arg	Anticodon: CCG at 35-37 (51841-51843)	Score: 82.22
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCGCCGCCCTCCGGAGGCGGAGGtCACAGGTtTCGACTCCTGTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>........<<<<<<<<<<<<....

chr.trna14 (1233478-1233554)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (1233512-1233514)	Score: 87.09
Seq: GTCCCCGTAGCTCAGCAGGAtAGAGCAGCCGCCTCCTAAGCGGCAGGtCGCAGGTTCGACTCCTGCCGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna48 (1075244-1075168)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1075210-1075208)	Score: 97.92
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGCAACGGCCTTCTAAGCCGTGGGtCGCAGGTTCGAATCCTGCCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1928016-1928092)	Length: 77 bp
Type: Asn	Anticodon: GTT at 35-37 (1928050-1928052)	Score: 90.80
Seq: TCCCCAGTAGCTCAGTTGGTtAGAGCGGTGGACTGTTAATCCATGTGtCGTTGGTTCGAATCCAACCTGGGGAGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1928115-1928191)	Length: 77 bp
Type: Asn	Anticodon: GTT at 35-37 (1928149-1928151)	Score: 90.80
Seq: TCCCCAGTAGCTCAGTTGGTtAGAGCGGTGGACTGTTAATCCATGTGtCGTTGGTTCGAATCCAACCTGGGGAGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (1820192-1820116)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1820158-1820156)	Score: 94.45
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (1820089-1820013)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1820055-1820053)	Score: 94.45
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna55 (709292-709219)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (709260-709258)	Score: 60.75
Seq: GGCGGGTTGGCAGAATGGCTATGCAGCGGATTGCAAATCCGTGGATCTCGGTTCGACTCCGGGACCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (992790-992864)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (992822-992824)	Score: 75.13
Seq: TGGGGCATAGCCAAGCGGTAAGGCAGCGGGTTTTGATCCCGCGATtCCCAGGTTCGATCCCTGGTGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (992902-992976)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (992934-992936)	Score: 75.13
Seq: TGGGGCATAGCCAAGCGGTAAGGCAGCGGGTTTTGATCCCGCGATtCCCAGGTTCGATCCCTGGTGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1903442-1903367)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (1903408-1903406)	Score: 64.48
Seq: GTCCCCTTCGTCTAGTGGTccAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCAAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1903334-1903259)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (1903300-1903298)	Score: 64.48
Seq: GTCCCCTTCGTCTAGTGGTccAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCAAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1903223-1903148)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (1903189-1903187)	Score: 65.28
Seq: GTCCCCTTCGTCTAGTGGCctAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCAAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (2465427-2465352)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (2465394-2465392)	Score: 94.21
Seq: GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna24 (2465320-2465245)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (2465287-2465285)	Score: 94.21
Seq: GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna54 (709374-709299)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (709341-709339)	Score: 94.21
Seq: GCGGGAATAGCTCAGCTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (348329-348403)	Length: 75 bp
Type: Gly	Anticodon: TCC at 34-36 (348362-348364)	Score: 69.55
Seq: GCGGGTGTCGTATAGTGGCtATTACCTCAGCCTTCCAAGCTGATGACGCGGGTTCGATTCCCGCCACCCGCTCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna49 (1075141-1075066)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1075108-1075106)	Score: 81.95
Seq: GTGGGTGTAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTTGtCGTGGGTTCAAGTCCCATCATCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (2752552-2752476)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2752518-2752516)	Score: 96.86
Seq: GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCAAGTCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (2436211-2436135)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2436177-2436175)	Score: 96.86
Seq: GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCAAGTCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (2027399-2027323)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (2027365-2027363)	Score: 96.86
Seq: GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCAAGTCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (1266544-1266468)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1266510-1266508)	Score: 96.86
Seq: GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCAAGTCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (2069992-2069907)	Length: 86 bp
Type: Leu	Anticodon: CAA at 35-37 (2069958-2069956)	Score: 75.12
Seq: GGCGCTGTGGTGGAATTGGTaGACACGCCTGATTCAAAATCAGGTTCCTTCTGGGAGTGACGGTTCAAGTCCGTCCAGCGCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>..<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna13 (992991-993077)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (993025-993027)	Score: 76.91
Seq: GCGGTGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGCTAGTGTCCGTAAGGACGTGGGGGTTCAAGTCCCCCCCTCCGCACCA
Str: >>>>.>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<.<<<<....

chr.trna51 (1026326-1026240)	Length: 87 bp
Type: Leu	Anticodon: GAG at 35-37 (1026292-1026290)	Score: 70.81
Seq: GCAGAAGTGGTGGAATTGGTaGACACGCTACCTTGAGGGGGTAGTGCTCTTACGGGCGTGCGGGTTCAAGTCCCGCCTTCTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna56 (709193-709107)	Length: 87 bp
Type: Leu	Anticodon: TAA at 35-37 (709159-709157)	Score: 78.42
Seq: GCCCGGGTGGTGGAATTGGTaGACACAAGGGATTTAAAATCCCTCGAAGGTAACTTCGTGCCGGTTCAAGTCCGGCCCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna10 (992684-992768)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (992718-992720)	Score: 73.22
Seq: GCGGACGTGGTGGAATTGGTaGACACGCTGGATTTAGGTTCCAGTGCCTCACGGCGTGAGAGTTCAAGTCTCTCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna44 (1164174-1164099)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (1164141-1164139)	Score: 96.65
Seq: GGGTTGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAATCCTGCACAACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna45 (1164068-1163993)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (1164035-1164033)	Score: 96.65
Seq: GGGTTGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAATCCTGCACAACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna41 (1377047-1376971)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1377013-1377011)	Score: 86.90
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna52 (1026164-1026088)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1026130-1026128)	Score: 86.90
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna27 (2347592-2347517)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (2347559-2347557)	Score: 90.40
Seq: GGCCCCTTAGCTCAGTGGTtAGAGCACCCGACTCATAATCGGTTGGtCCCCAGTTCAAATCTGGGAGGGGCCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna9 (992588-992664)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (992622-992624)	Score: 93.31
Seq: GGCTACGTAGCTCAGCTGGTtAGAGCACAGCACTCATAATGCTGGGGtCGCAAGTTCGAATCTCGCCGTAGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

chr.trna15 (1304306-1304381)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (1304339-1304341)	Score: 88.50
Seq: GCCCGGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGtCGGTGGTTCGATTCCGCCTCCGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (734230-734306)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (734264-734266)	Score: 78.24
Seq: CGGCGTGTGGCGCAGCTtGGTAGCGCACTGTCATGGGGTGTCAGGGGtCGGAGGTTCAAATCCTCTCACGCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna47 (1075349-1075273)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1075315-1075313)	Score: 90.68
Seq: CGGCGATTAGCGCAGTTtGGTAGCGCACTTGGTTTGGGTCCAAGGGGtCGCAGGTTCAAATCCTGCATCGCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna50 (1075038-1074962)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1075004-1075002)	Score: 90.68
Seq: CGGCGATTAGCGCAGTTtGGTAGCGCACTTGGTTTGGGTCCAAGGGGtCGCAGGTTCAAATCCTGCATCGCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (1869493-1869401)	Length: 93 bp
Type: Ser	Anticodon: GCT at 35-37 (1869459-1869457)	Score: 77.54
Seq: GGAGAGGTGGCCGAGTGGCtgAAGGCGCTCCCCTGCTAAGGGAGTATAGGGTTTGTaGCCCTATCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna46 (1147610-1147523)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (1147576-1147574)	Score: 65.44
Seq: GGAGAGGTGTCCGAGTGGCtgAAGGAGCACGCCTGGAAAGTGTGTATACGGCAACGTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna53 (715281-715190)	Length: 92 bp
Type: Ser	Anticodon: TGA at 37-39 (715245-715243)	Score: 79.95
Seq: GGAGAGGTGGCAGAGCTcGGTttAATGCACCTGACTTGAAATCAGGCGTGGGTTCATACCCACCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna5 (348416-348491)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (348449-348451)	Score: 97.57
Seq: GCTGATATAGCTCAGTTGGTAGAGCGCACCCTTGGTAAGGGTGAGGtCGGCGGTTCGAATCCGCCTATCAGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (348104-348179)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (348137-348139)	Score: 93.97
Seq: GCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGtCCCGAGTTCGACTCTTGGTGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (2017242-2017166)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (2017208-2017206)	Score: 75.45
Seq: AGGGGCGTAGTTCcAATTGGTAGAACAGCGGTCTCCAAAACCGACGGtTGGGGGTTCGAATCCCTCCGCCCCTGCCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna6 (349907-349983)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (349941-349943)	Score: 75.54
Seq: AGGGGCGTAGTTCcAATTGGTAGAACAGCGGTCTCCAAAACCGATGGtTGGGGGTTCGAATCCCTCCGCCCCTGCCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna3 (348199-348283)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (348233-348235)	Score: 73.83
Seq: GGAGGGGTTCCCGAGTGGCcaAAGGGATCAGACTGTAAATCTGACGGCTCAGCCTtCGCAGGTTCGAATCCTGCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna8 (883929-884013)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (883963-883965)	Score: 73.83
Seq: GGAGGGGTTCCCGAGTGGCcaAAGGGATCAGACTGTAAATCTGACGGCTCAGCCTtCGCAGGTTCGAATCCTGCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1506314-1506390)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (1506348-1506350)	Score: 93.41
Seq: GCGTCCGTAGCTCAGTTGGTtAGAGCGCTGCCTTGACATGGCAGAGGtCGGTAGTTCGAGTCTACTCGGACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1906022-1906097)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1906055-1906057)	Score: 91.41
Seq: GGTTGCTTAGCTCAGTTGGGAGAGCATCGCCCTTACAAGGCGAGGGtCACTGGTTCAAGCCCAGTAGCAACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (1906133-1906208)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1906166-1906168)	Score: 92.53
Seq: GGTTGCTTAGCTCAGTTGGGAGAGCATCGCCCTTACAAGGCGAGGGtCACTGGTTCGAGCCCAGTAGCAACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.