tRNAscan-SE Analysis of the Idiomarina loihiensis L2TR Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	32	1903565	1903490	View	Ala	GGC	0	0	86.51	68.27	18.24	Both

chr	22	2752216	2752141	View	Ala	TGC	0	0	93.85	76.74	17.11	Both
chr	26	2435875	2435800	View	Ala	TGC	0	0	93.85	76.74	17.11	Both
chr	30	2027063	2026988	View	Ala	TGC	0	0	93.85	76.74	17.11	Both
chr	43	1266353	1266278	View	Ala	TGC	0	0	93.85	76.74	17.11	Both

chr	38	1869281	1869205	View	Arg	ACG	0	0	83.56	61.57	21.99	Both
chr	37	1869379	1869303	View	Arg	ACG	0	0	87.36	65.36	22.00	Both

chr	1	51807	51884	View	Arg	CCG	0	0	82.22	61.80	20.42	Eufind

chr	14	1233478	1233554	View	Arg	CCT	0	0	87.09	62.58	24.51	Both

chr	48	1075244	1075168	View	Arg	TCT	0	0	97.92	79.89	18.03	Both

chr	19	1928016	1928092	View	Asn	GTT	0	0	90.80	64.60	26.20	Both
chr	20	1928115	1928191	View	Asn	GTT	0	0	90.80	64.60	26.20	Both

chr	39	1820192	1820116	View	Asp	GTC	0	0	94.45	73.54	20.91	Both
chr	40	1820089	1820013	View	Asp	GTC	0	0	94.45	73.54	20.91	Both

chr	55	709292	709219	View	Cys	GCA	0	0	60.75	34.59	26.16	Both

chr	11	992790	992864	View	Gln	TTG	0	0	75.13	45.04	30.09	Both
chr	12	992902	992976	View	Gln	TTG	0	0	75.13	45.04	30.09	Both

chr	33	1903442	1903367	View	Glu	TTC	0	0	64.48	36.27	28.21	Both
chr	34	1903334	1903259	View	Glu	TTC	0	0	64.48	36.27	28.21	Both
chr	35	1903223	1903148	View	Glu	TTC	0	0	65.28	37.07	28.21	Both

chr	23	2465427	2465352	View	Gly	GCC	0	0	94.21	70.04	24.17	Both
chr	24	2465320	2465245	View	Gly	GCC	0	0	94.21	70.04	24.17	Both
chr	54	709374	709299	View	Gly	GCC	0	0	94.21	70.04	24.17	Both

chr	4	348329	348403	View	Gly	TCC	0	0	69.55	41.94	27.61	Both

chr	49	1075141	1075066	View	His	GTG	0	0	81.95	64.24	17.71	Both

chr	21	2752552	2752476	View	Ile	GAT	0	0	96.86	70.72	26.14	Both
chr	25	2436211	2436135	View	Ile	GAT	0	0	96.86	70.72	26.14	Both
chr	29	2027399	2027323	View	Ile	GAT	0	0	96.86	70.72	26.14	Both
chr	42	1266544	1266468	View	Ile	GAT	0	0	96.86	70.72	26.14	Both

chr	28	2069992	2069907	View	Leu	CAA	0	0	75.12	48.37	26.75	Both

chr	13	992991	993077	View	Leu	CAG	0	0	76.91	52.92	23.99	Both

chr	51	1026326	1026240	View	Leu	GAG	0	0	70.81	39.34	31.47	Both

chr	56	709193	709107	View	Leu	TAA	0	0	78.42	39.94	38.48	Both

chr	10	992684	992768	View	Leu	TAG	0	0	73.22	41.56	31.66	Both

chr	44	1164174	1164099	View	Lys	TTT	0	0	96.65	72.97	23.68	Both
chr	45	1164068	1163993	View	Lys	TTT	0	0	96.65	72.97	23.68	Both

chr	41	1377047	1376971	View	Met	CAT	0	0	86.90	62.41	24.49	Both
chr	52	1026164	1026088	View	Met	CAT	0	0	86.90	62.41	24.49	Both
chr	27	2347592	2347517	View	Met	CAT	0	0	90.40	69.20	21.20	Both
chr	9	992588	992664	View	Met	CAT	0	0	93.31	71.59	21.72	Both

chr	15	1304306	1304381	View	Phe	GAA	0	0	88.50	67.45	21.05	Both

chr	7	734230	734306	View	Pro	GGG	0	0	78.24	51.72	26.52	Both

chr	47	1075349	1075273	View	Pro	TGG	0	0	90.68	65.78	24.90	Both
chr	50	1075038	1074962	View	Pro	TGG	0	0	90.68	65.78	24.90	Both

chr	36	1869493	1869401	View	Ser	GCT	0	0	77.54	47.31	30.23	Both

chr	46	1147610	1147523	View	Ser	GGA	0	0	65.44	33.10	32.34	Both

chr	53	715281	715190	View	Ser	TGA	0	0	79.95	52.76	27.19	Both

chr	5	348416	348491	View	Thr	GGT	0	0	97.57	71.91	25.66	Both

chr	2	348104	348179	View	Thr	TGT	0	0	93.97	70.56	23.41	Both

chr	31	2017242	2017166	View	Trp	CCA	0	0	75.45	55.08	20.37	Both
chr	6	349907	349983	View	Trp	CCA	0	0	75.54	55.16	20.38	Both

chr	3	348199	348283	View	Tyr	GTA	0	0	73.83	44.07	29.76	Both
chr	8	883929	884013	View	Tyr	GTA	0	0	73.83	44.07	29.76	Both

chr	16	1506314	1506390	View	Val	GAC	0	0	93.41	67.11	26.30	Both

chr	17	1906022	1906097	View	Val	TAC	0	0	91.41	64.69	26.72	Both
chr	18	1906133	1906208	View	Val	TAC	0	0	92.53	65.82	26.71	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.