tRNAscan-SE Analysis of the Idiomarina loihiensis L2TR Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTAGCTCCACCA chr.trna32-AlaGGC Sc: 86.51  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chr.trna43-AlaTGC Sc: 93.85  
GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chr.trna30-AlaTGC Sc: 93.85  
GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chr.trna26-AlaTGC Sc: 93.85  
GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chr.trna22-AlaTGC Sc: 93.85  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<....
GCGCTCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCGGAGGT.TCGAATCCTCCCGAGCGCGCCA chr.trna37-ArgACG Sc: 87.36  
GCGCTCGTAGCTCAACTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtTGGAGGT.TCGAGTCCTCCCGAGCGCGCCA chr.trna38-ArgACG Sc: 83.56  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<....
GCGCCCGTAGCTCAGCTGGAtAGAGCGCCGCCCTCCGGAGGCGGAG...........GtCACAGGTtTCGACTCCTGTCGGGCGCGCCA chr.trna1-ArgCCG Sc: 82.22  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<....
GTCCCCGTAGCTCAGCAGGAtAGAGCAGCCGCCTCCTAAGCGGCAG...........GtCGCAGGT.TCGACTCCTGCCGGGGACGCCA chr.trna14-ArgCCT Sc: 87.09  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>........<<<<<<<<<<<<....
GCGCCCGTAGCTCAGTTGGAtAGAGCAACGGCCTTCTAAGCCGTGG...........GtCGCAGGT.TCGAATCCTGCCGGGTGCGCCA chr.trna48-ArgTCT Sc: 97.92  



Asn tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCAGTAGCTCAGTTGGTtAGAGCGGTGGACTGTTAATCCATGT...........GtCGTTGGTTCGAATCCAACCTGGGGAGCCA chr.trna20-AsnGTT Sc: 90.80  
TCCCCAGTAGCTCAGTTGGTtAGAGCGGTGGACTGTTAATCCATGT...........GtCGTTGGTTCGAATCCAACCTGGGGAGCCA chr.trna19-AsnGTT Sc: 90.80  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGTCCCGTCCACTCCGCCA chr.trna40-AspGTC Sc: 94.45  
GGAGTGGTAGTTCAGTTGGTtAGAATGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGTCCCGTCCACTCCGCCA chr.trna39-AspGTC Sc: 94.45  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGGGTTGGCAGAATGGCT.ATGCAGCGGATTGCAAATCCGTGG...........ATCTCGGTTCGACTCCGGGACCCGCCTCCA chr.trna55-CysGCA Sc: 60.75  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGCATAGCCAAGCGGTA.AGGCAGCGGGTTTTGATCCCGCGA...........TtCCCAGGTTCGATCCCTGGTGCCCCAGCCA chr.trna12-GlnTTG Sc: 75.13  
TGGGGCATAGCCAAGCGGTA.AGGCAGCGGGTTTTGATCCCGCGA...........TtCCCAGGTTCGATCCCTGGTGCCCCAGCCA chr.trna11-GlnTTG Sc: 75.13  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGTGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCAAATCCCCTAGGGGACGCCA chr.trna35-GluTTC Sc: 65.28  
GTCCCCTTCGTCTAGTGGTccA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCAAATCCCCTAGGGGACGCCA chr.trna34-GluTTC Sc: 64.48  
GTCCCCTTCGTCTAGTGGTccA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCAAATCCCCTAGGGGACGCCA chr.trna33-GluTTC Sc: 64.48  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGCTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAATCTCGTTTCCCGCTCCA chr.trna54-GlyGCC Sc: 94.21  
GCGGGAATAGCTCAGCTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAATCTCGTTTCCCGCTCCA chr.trna24-GlyGCC Sc: 94.21  
GCGGGAATAGCTCAGCTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAATCTCGTTTCCCGCTCCA chr.trna23-GlyGCC Sc: 94.21  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTCGTATAGT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.CGCGGGTTCGATTCCCGCCACCCGCTCCA chr.trna4-GlyTCC Sc: 69.55  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGGTGTAGCTCAGTTGGTAGAGCCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCAAGTCCCATCATCCACCCCA chr.trna49-HisGTG Sc: 81.95  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCAAGTCTGCCCAGACCCACCA chr.trna42-IleGAT Sc: 96.86  
GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCAAGTCTGCCCAGACCCACCA chr.trna29-IleGAT Sc: 96.86  
GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCAAGTCTGCCCAGACCCACCA chr.trna25-IleGAT Sc: 96.86  
GGGTCTGTAGCTCAGCTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGCAGTTCAAGTCTGCCCAGACCCACCA chr.trna21-IleGAT Sc: 96.86  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCAGAAGTGGTGGAATTGGTaGACACGCTACCTTGAGGGGGTAGT.GCTC.TTAC......GGGCGTGCGGGTTCAAGTCCCGC.CTTCTGCACCA chr.trna51-LeuGAG Sc: 70.81  

>>>>.>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<.<<<<....
GCGGTGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGCTAGT.GTCC.GTAA......GGACGTGGGGGTTCAAGTCCCCC.CCTCCGCACCA chr.trna13-LeuCAG Sc: 76.91  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGACGTGGTGGAATTGGTaGACACGCTGGATTTAGGTTCCAGT.GCC..TCAC.......GGCGTGAGAGTTCAAGTCTCTC.CGTCCGCACCA chr.trna10-LeuTAG Sc: 73.22  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>...........<<<...>>>>>.......<<<<<.<<<<<<<....
GGCGCTGTGGTGGAATTGGTaGACACGCCTGATTCAAAATCAGGTTCCTTC.........TGGGAGTGACGGTTCAAGTCCGTC.CAGCGCCACCA chr.trna28-LeuCAA Sc: 75.12  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGTGGAATTGGTaGACACAAGGGATTTAAAATCCCTC.GAAG.GTAA......CTTCGTGCCGGTTCAAGTCCGGC.CCCGGGCACCA chr.trna56-LeuTAA Sc: 78.42  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTTGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCGAATCCTGCACAACCCACCA chr.trna45-LysTTT Sc: 96.65  
GGGTTGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCGAATCCTGCACAACCCACCA chr.trna44-LysTTT Sc: 96.65  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GGCTACGTAGCTCAGCT.GGTtA.GAGCACAGCACTCATAATGCTGGG...........GtCGCAAGTTCGAATCTCGCCGTAGCCACCA chr.trna9-MetCAT Sc: 93.31  
>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGCCCCTTAGCTCAGT..GGTtA.GAGCACCCGACTCATAATCGGTTG...........GtCCCCAGTTCAAATCTGGGAGGGGCCACCA chr.trna27-MetCAT Sc: 90.40  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAACCA chr.trna52-MetCAT Sc: 86.90  
CGCGGGGTGGAGCAGTCtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAACCA chr.trna41-MetCAT Sc: 86.90  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCGGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGT...........GtCGGTGGTTCGATTCCGCCTCCGGGCACCA chr.trna15-PheGAA Sc: 88.50  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGTGTGGCGCAGCTtGGTAGCGCACTGTCATGGGGTGTCAGGG...........GtCGGAGGTTCAAATCCTCTCACGCCGACCA chr.trna7-ProGGG Sc: 78.24  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGATTAGCGCAGTTtGGTAGCGCACTTGGTTTGGGTCCAAGGG...........GtCGCAGGTTCAAATCCTGCATCGCCGACCA chr.trna50-ProTGG Sc: 90.68  
CGGCGATTAGCGCAGTTtGGTAGCGCACTTGGTTTGGGTCCAAGGG...........GtCGCAGGTTCAAATCCTGCATCGCCGACCA chr.trna47-ProTGG Sc: 90.68  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>>>.........<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGTCCGAGT..GGCtgA.AGGAGCACGCCTGGAAAGTGTGTATACG..GCAA...CGTATCGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna46-SerGGA Sc: 65.44  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGCTcGGTttA.ATGCACCTGACTTGAAATCAGGCGTGGGT.TCAT..ACCCACCGGGGGTTCGAATCCCTC..CCTCTCCGCCA chr.trna53-SerTGA Sc: 79.95  


>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGT..GGCtgA.AGGCGCTCCCCTGCTAAGGGAGTATAGGGTTTGTaGCCCTATCGAGGGTTCGAATCCCTC..CCTCTCCGCCA chr.trna36-SerGCT Sc: 77.54  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGATATAGCTCAGTTGGTAGAGCGCACCCTTGGTAAGGGTGAG...........GtCGGCGGTTCGAATCCGCCTATCAGCACCA chr.trna5-ThrGGT Sc: 97.57  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCCCGAGTTCGACTCTTGGTGCCGGCACCA chr.trna2-ThrTGT Sc: 93.97  



Trp tRNAs


>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
AGGGGCGTAGTTCcAATTGGTAGAACAGCGGTCTCCAAAACCGATG...........GtTGGGGGTTCGAATCCCTCCGCCCCTGCCA chr.trna6-TrpCCA Sc: 75.54  
AGGGGCGTAGTTCcAATTGGTAGAACAGCGGTCTCCAAAACCGACG...........GtTGGGGGTTCGAATCCCTCCGCCCCTGCCA chr.trna31-TrpCCA Sc: 75.45  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTTCCCGAGTGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTCA.....GCCTtCGCAGGTTCGAATCCTGC.CCCCTCCACCA chr.trna8-TyrGTA Sc: 73.83  
GGAGGGGTTCCCGAGTGGCcaA.AGGGATCAGACTGTAAATCTGACGGCTCA.....GCCTtCGCAGGTTCGAATCCTGC.CCCCTCCACCA chr.trna3-TyrGTA Sc: 73.83  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTCCGTAGCTCAGTTGGTtAGAGCGCTGCCTTGACATGGCAGAG...........GtCGGTAGTTCGAGTCTACTCGGACGCACCA chr.trna16-ValGAC Sc: 93.41  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTGCTTAGCTCAGTTGGG.AGAGCATCGCCCTTACAAGGCGAGG...........GtCACTGGTTCGAGCCCAGTAGCAACCACCA chr.trna18-ValTAC Sc: 92.53  
GGTTGCTTAGCTCAGTTGGG.AGAGCATCGCCCTTACAAGGCGAGG...........GtCACTGGTTCAAGCCCAGTAGCAACCACCA chr.trna17-ValTAC Sc: 91.41

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.