Genomic tRNA Database: Hyperthermus butylicus

tRNAscan-SE Analysis of Hyperthermus butylicus

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Predicted tRNA Secondary Structures

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chr.trna47 (1-77)	Length: 77 bp
Type: Ala	Anticodon: CGC at 35-37 (35-37)	Score: 90.23
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGTTCGCACCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (1-77)	Length: 77 bp
Type: Ala	Anticodon: GGC at 35-37 (35-37)	Score: 87.98
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGTTGGCATCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (1-77)	Length: 77 bp
Type: Ala	Anticodon: TGC at 35-37 (35-37)	Score: 92.62
Seq: GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGCTTGCACCCGAGAGGtCCCGGGTTCAAATCCCGGCCGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1-79)	Length: 79 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 41.58
Seq: GAGCCCGTAGCCCAGCCaGGAcAGAGCGCCAGCCTCCGGGGCCGGAGGtCCCAGGTTCtcgGAGCCCgTGGCGGGCTCG
Str: >>>>>>>..>>.>..........<.<<.>>.>>.......<<.<<.....>>>>>..........<<.<<<<<<<<<<.

chr.trna18 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCG at 36-38 (36-38)	Score: 93.48
Seq: GGGCCCGTAGCTCAGCCaGGAcAGAGCGCCGGCCTCCGGAGCCGGAGGtCCCGGGTTCAAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1-78)	Length: 78 bp
Type: Arg	Anticodon: CCT at 36-38 (36-38)	Score: 91.62
Seq: GGGCCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTCCTAAGCCGGTGGtCGGGGGTTCAAATCCCCCCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (1-78)	Length: 78 bp
Type: Arg	Anticodon: GCG at 36-38 (36-38)	Score: 85.42
Seq: GGGCCCGTAGTCTAGCCaGGAtAGGACGCCGGCCTGCGGAGCCGGTAGtCCGGGGTTCAAATCCCCGCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 90.03
Seq: GGGCCCGTAGCCTAGCCaGGAtAGGGCGCCGGCCTTCGGAGCCGGAGGtCCGGGGTTCAAATCCCCGCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1-78)	Length: 78 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 88.28
Seq: GGGCCCGTAGCCTAGCCaGGAtAGGGCGCCGGCCTTCTAAGCCGGTAGtCCGGGGTTCAAATCCCCGCGGGCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (1-76)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (34-36)	Score: 83.72
Seq: GCCGCCGTAGCTCAGCGGGtAGAGCGCCGGGCTGTTAACCCGGTGGtCGGTGGTTCGAATCCACCCGGCGGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (1-78)	Length: 78 bp
Type: Asp	Anticodon: GTC at 37-39 (37-39)	Score: 84.07
Seq: GCCGCGGTAGTATAGCCtGGCccAGTATGCGGGCCTGTCAAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna44 (1-102)	Length: 102 bp
Type: Cys	Anticodon: GCA at 35-37 (35-37)	Score: 68.46
Possible intron: 39-63 (39-63)
Seq: GCCGGGGTGGCCGAGCGGTcaAAGGCGGCGGGCTGCAGtgcctagcacccgcccatcgtggaaACCCGTTGAtCCCGGGTTCAAATCCCGGCCCCGGCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1-76)	Length: 76 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 69.66
Seq: AGCCGGGTCGTCTAGCGGCcaAGGATGCGGGGCTCTGGCCCCCGTGACCGGGGTTCGAATCCCCGCCCGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (1-99)	Length: 99 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 61.35
Possible intron: 39-61 (39-61)
Seq: AGCCGGGTCGTCTAGCGGCcaAGGATGCGGGGCTTTGGgccggccggctggccgggaggaaCCCCCGTGACCGGGGTTCGAATCCCCGCCCGGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..............................<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1-78)	Length: 78 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 83.19
Seq: GCCGCGGTAGTATAGCCcGGCcaAGTATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna41 (1-78)	Length: 78 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 84.11
Seq: GCCGCGGTAGTATAGCCcGGCcaAGTATGCGGGCCTTTCAAGCCCGTGACCCGGGTTCAAATCCCGGCCGCGGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (1-78)	Length: 78 bp
Type: Gly	Anticodon: CCC at 37-39 (37-39)	Score: 78.65
Seq: GCGGCGGTCGTCTAGCCtGGActAGGACGCCGGCCCCCCAAGCCGGTCACCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (1-79)	Length: 79 bp
Type: Gly	Anticodon: GCC at 37-39 (37-39)	Score: 89.59
Seq: GCGGCGGTCGTCTAGCCtGGActAGGACGCCGGCCTGCCAAGCCGGCGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (1-79)	Length: 79 bp
Type: Gly	Anticodon: TCC at 37-39 (37-39)	Score: 91.23
Seq: GCGGCGGTCGTCTAGCCtGGActAGGACGCCGGCCTTCCAAGCCGGTGAtCCCGGGTTCAAATCCCGGCCGCCGCACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (1-76)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (34-36)	Score: 87.19
Seq: GCCGCCGTAGCTCAGCCGGGAGAGCGCGGGGCTGTGGACCCCGAGGtCCCGGGTTCAAATCCCGGCGGCGGCCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (1-77)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (35-37)	Score: 89.43
Seq: GGGCCCGTAGCTCAGCCcGGCGGAGCGCCCGGCTGATAACCGGGAGGtCGGGGGTTCAAATCCCCCCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1-88)	Length: 88 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 77.04
Seq: GCGGGGGTGCCCGAGCCaGGTcgAAGGGGGCGGGCTCAAGACCCGCTGGCGTAGGCCGgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna24 (1-88)	Length: 88 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 78.91
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTCAGGACCCGCTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna46 (1-88)	Length: 88 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 78.83
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTGAGGACCCGCTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna40 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 81.30
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTTAAGACCCGCTGGCGTAGGCCGgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna5 (1-88)	Length: 88 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 79.47
Seq: GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTTAGGACCCGCTGGCGTAGGCCTgCGTGGGTTCAAATCCCACCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1-77)	Length: 77 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 92.49
Seq: GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAACCCGTAGGtCCCGGGTTCGAATCCCGGCGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAG[ACCAGCGGGCCTTCAGGCCTGGCTGGGCGGAA]GTCCCGGGTTCGAATCCCGGCGGGCCCGCCA

chr.trna28 (1-77)	Length: 77 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 93.04
Seq: GGGCCGGTAGCTCAGCCtGGCAGAGCGGCGGGCTTTTAACCCGTAGGtCCCGGGTTCAAATCCCGGCCGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (1-77)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 81.28
Seq: AGCGGGGTAGGGTAGCCtGGTAGCCCGCGGGGCTCATAACCCCGAGGtCGGTGGTTCAAATCCACCCCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1-77)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 94.65
Seq: GGGCCCGTAGCTCAGCCcGGTAGAGCGCCCGGCTCATAACCGGGTGGtCGGGGGTTCAAATCCCCCCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1-129)	Length: 129 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 75.80
Possible intron: 40-90 (40-90)
Seq: GCCGCCGTAGCTCAGCGcGGTcAGAGCGCCGGACTCATAcggggctccccggtccacagccccggagtcggcctcgggggtccctgggggATCCGGTGGtCCCGGGTTCAAGTCCCGGCGGCGGCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>..........................................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (1-75)	Length: 75 bp
Type: Phe	Anticodon: GAA at 33-35 (33-35)	Score: 86.53
Seq: GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGtCCGGGGTTCGAATCCCCGCGGCGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (1-77)	Length: 77 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 86.54
Seq: GGGCCCGTCGTCTAGCTtGGTAGGATGCGGGGTTCGGGACCCCGTGGtCCCGGGTTCAAATCCCGGCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: GGGCCCGTCGTCTAGCTTGGTAGGATGCGGGGT[ACACAGCTCCCGCCAGGGCGCGGGGCTGTGCCCGAC]TCGGGACCCCGTGGTCCCGGGTTCAAATCCCGGCGGGCCCACCA

chr.trna17 (1-112)	Length: 112 bp
Type: Pro	Anticodon: GGG at 35-37 (35-37)	Score: 73.09
Possible intron: 39-73 (39-73)
Seq: GGGGCCGTCGTCTAGCCtGGCAGGATGCCAGCCTGGGGacgcaccccgccgcccgaaagggcgggcgccagagCGCTGGTGGtCCCGGGTTCAAATCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..........................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1-77)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 82.99
Seq: GGGGCCGTCGTCTAGCTtGGCAGGATGCGGGGCTTGGGCCCCCGTGGtCCGGGGTTCAAATCCCCGCGGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (1-122)	Length: 122 bp
Type: Ser	Anticodon: CGA at 35-37 (35-37)	Score: 67.92
Possible intron: 39-71 (39-71)
Seq: GCCGGGGTGGCCGAGCGGTccAAGGCGGTGGGCTCGAGacccaggttttccggcttggtaggggctgggagACCCACTGCCCCGTAAGGGGCGCGCGGGTTCAAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>........................................<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna8 (1-88)	Length: 88 bp
Type: Ser	Anticodon: GCT at 35-37 (35-37)	Score: 82.71
Seq: GCCGGGGTCGCCTAGCCtGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGGGTCCacCCCGCGCGGGTTCAAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1-88)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 75.63
Seq: GCCGGGGTGCCCGAGCGGTccAAGGGGCCGGCCTGGAGAGCCGGTGGCCGACAaGGCCgCGCGGGTTCAAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1-88)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 76.26
Seq: GCCGGGGTGCCCGAGCGGTccAAGGGGCCGGCCTTGAGAGCCGGTGGCCGACAaGGCCgCGCGGGTTCAAATCCCGCCCCCGGCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna32 (1-107)	Length: 107 bp
Type: Thr	Anticodon: CGT at 34-36 (34-36)	Score: 75.56
Possible intron: 38-68 (38-68)
Seq: GCCGCCGTAGCTCAGCTGGCAGAGCACCGGCCTCGTAagcccgcctggtgtcccgcgggttccgagggAGCCGGGGGtCCCGGGTTCAAATCCCGGCGGCGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>......................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (1-77)	Length: 77 bp
Type: Thr	Anticodon: GGT at 35-37 (35-37)	Score: 91.08
Seq: GCCGCCGTAGCTCAGCCtGGCGGAGCGCCGCCCTGGTAAGGCGGAGGtCCCGGGTTCAAATCCCGGCGGCGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna45 (1-75)	Length: 75 bp
Type: Thr	Anticodon: TGT at 33-35 (33-35)	Score: 93.36
Seq: GCCGCCGTAGCTCAGCGGTAGAGCGCCGGCCTTGTAAGCCGGTGGtCGCGGGTTCGAATCCCGCCGGCGGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1-132)	Length: 132 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 81.27
Possible intron: 39-93 (39-93)
Seq: GGGCCCGTAGCTCAGCCaGGCAGAGCGCCGGGCTCCAGaccggcacctccggtccaggcgccgggtctgtcgaaaacgggatgagagggagagACCCGGAGGtCGGGGGTTCAAATCCCCCCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..............................................................<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna38 (1-144)	Length: 144 bp
Type: Tyr	Anticodon: GTA at 33-35 (33-35)	Score: 71.67
Possible intron: 37-105 (37-105)
Seq: CCCGCCGTAGCTCAGCGGCAGAGCGCCCGGCTGTAGgtggggcgggtccccgcaatggggagcggatgagggcgcgtcggcatagcagcgggggccgcagcagaaACCGGGCGGtCCGGGGTTCGAATCCCCGCGGCGGGACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>............................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
BHB: CCCGCCGTAGCTCAGCGGCAGAGCGCCCGGCTGTAGGTGGGGCGGGT[AGGCCCCCCGCGCGCCCGACAA]CCCCGCAATGGGGAGCGGATGAGGGCGCGTCGGCATAGCAGCGGGGGCCGCAGCAGAAACCGGGCGGTCCGGGGTTCGAATCCCCGCGGCGGGACCA

chr.trna43 (1-78)	Length: 78 bp
Type: Val	Anticodon: CAC at 36-38 (36-38)	Score: 88.39
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTCACACGGCGGAGGtCCGGGGTTCAAATCCCCGCGGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (1-78)	Length: 78 bp
Type: Val	Anticodon: GAC at 36-38 (36-38)	Score: 88.31
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTGACACGGCGGAGGtCCGGGGTTCAAATCCCCGCGGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (1-78)	Length: 78 bp
Type: Val	Anticodon: TAC at 36-38 (36-38)	Score: 88.94
Seq: GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTTACACGGCGGAGGtCCGGGGTTCAAATCCCCGCGGGCCCACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.