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tRNAscan-SE Analysis of Hyperthermus butylicus

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 47 2453 2377 View Ala CGC ttggatgggt ccccccacct 0 0 90.23 77.49 12.74   chr 36 598843 598767 View Ala GGC ccggctgggt cccccaccga 0 0 87.98 75.24 12.74   chr 12 1062352 1062428 View Ala TGC atggattggt ccctctactc 0 0 92.62 79.88 12.74     chr 35 659019 658941 View Arg CCG caactaggat tcaccagggt 0 0 41.58 32.22 9.36   chr 18 1173683 1173760 View Arg CCG ggactaggat caagcacatc 0 0 93.48 84.42 9.06   chr 34 1024095 1024018 View Arg CCT gagcctggct acaactcgac 0 0 91.62 80.85 10.77   chr 30 1277540 1277463 View Arg GCG accatgggct tcccacacta 0 0 85.42 74.28 11.14   chr 31 1187274 1187197 View Arg TCG caggatttgt ttcgagacat 0 0 90.03 80.00 10.03   chr 21 1612557 1612634 View Arg TCT gtagagaggc ccctcatgat 0 0 88.28 78.25 10.03     chr 14 1143028 1143103 View Asn GTT cggtgcagat caatcccttc 0 0 83.72 68.04 15.68     chr 25 1655763 1655840 View Asp GTC acaacatggt atctcctcct 0 0 84.07 69.97 14.10     chr 44 77698 77597 View Cys GCA acggatgggc acctctccct 77660 77636 68.46 54.35 14.11     chr 22 1617396 1617471 View Gln CTG catggcgggt ttcctttcat 0 0 69.66 50.30 19.36   chr 10 830868 830966 View Gln TTG atagtggggt ctacaacccg 830906 830928 61.35 42.00 19.35     chr 27 1600133 1600056 View Glu CTC ccctctggct aatccacatc 0 0 83.19 69.09 14.10   chr 41 130216 130139 View Glu TTC tgcgcggcgt actcctctaa 0 0 84.11 70.02 14.09     chr 39 376263 376186 View Gly CCC ccaggtggct caatctacct 0 0 78.65 68.77 9.88   chr 42 123181 123103 View Gly GCC atggatggct ccctcccctt 0 0 89.59 79.71 9.88   chr 37 510728 510650 View Gly TCC taacacggtt attccacaca 0 0 91.23 81.34 9.89     chr 1 2781 2856 View His GTG ccagtgggag ctccatcctc 0 0 87.19 74.89 12.30     chr 11 1033612 1033688 View Ile GAT ccaataacct ccctcctcct 0 0 89.43 76.17 13.26     chr 29 1343694 1343607 View Leu CAA ctacatggct ccccctcctt 0 0 77.04 55.13 21.91   chr 24 1630705 1630792 View Leu CAG agcccaggct ccctcctctc 0 0 78.91 57.00 21.91   chr 46 7984 7897 View Leu GAG ggcagcggct accaattatc 0 0 78.83 56.92 21.91   chr 40 369919 369832 View Leu TAA tcttaacggt ccctcctctc 0 0 81.30 59.39 21.91   chr 5 373701 373788 View Leu TAG gcttctggct ctcctttcca 0 0 79.47 57.56 21.91     chr 33 1029253 1029145 View Lys CTT ccacgcggtt cacccccttc 0 0 92.49 82.85 9.64   chr 28 1499066 1498990 View Lys TTT gatggggtct caacacctcc 0 0 93.04 83.50 9.54     chr 13 1134522 1134598 View Met CAT ggggtagcat cagcccgcaa 0 0 81.28 56.02 25.26   chr 15 1143716 1143792 View Met CAT tggatgtgtc ccctcctcct 0 0 94.65 81.38 13.27   chr 26 1616934 1616806 View Met CAT ggccagtggt ttagctcggc 1616895 1616845 75.80 65.56 10.24     chr 9 510916 510990 View Phe GAA ctgtaatggt gccccattct 0 0 86.53 72.56 13.97     chr 7 452831 452943 View Pro CGG tggatgaggt ctactcaacc 0 0 86.54 74.56 11.98   chr 17 1171412 1171523 View Pro GGG acggccagac ttacttctcc 1171450 1171484 73.09 59.75 13.34   chr 23 1619263 1619339 View Pro TGG acacgctggt ctaaaccctt 0 0 82.99 68.93 14.06     chr 4 373519 373640 View Ser CGA gcgtgtgggt ccaaaaccat 373557 373589 67.92 47.41 20.51   chr 8 455560 455647 View Ser GCT catggcaggt cacctcctaa 0 0 82.71 63.87 18.84   chr 20 1593236 1593323 View Ser GGA agccctgggc tactactcct 0 0 75.63 59.50 16.13   chr 19 1326254 1326341 View Ser TGA ccccctgggc taccgcctct 0 0 76.26 60.13 16.13     chr 32 1131276 1131170 View Thr CGT caaaacatgt taattctgcg 1131239 1131209 75.56 65.70 9.86   chr 6 444135 444211 View Thr GGT tacactggaa cctgcgggcc 0 0 91.08 79.39 11.69   chr 45 48304 48230 View Thr TGT cggctactgt ctactcctcc 0 0 93.36 83.40 9.96     chr 16 1144457 1144588 View Trp CCA tgaatagggt cgcaccccta 1144495 1144549 81.27 70.04 11.23     chr 38 447553 447388 View Tyr GTA accgctggat ccctcccccg 76 144 71.67 53.43 18.24     chr 43 119110 119033 View Val CAC gggtgtggct ctacccatct 0 0 88.39 75.41 12.98   chr 2 65064 65141 View Val GAC agtgttggtc ctcatactcc 0 0 88.31 75.33 12.98   chr 3 360308 360385 View Val TAC gaaaagggct tgtacaacat 0 0 88.94 75.96 12.98   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.