Genomic tRNA Database: Hyperthermus butylicus

tRNAscan-SE Analysis of Hyperthermus butylicus

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>> tRNA Alignments

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Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGTTGGCATCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCACCA chr.trna36-AlaGGC Sc: 87.98  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGTTCGCACCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCACCA chr.trna47-AlaCGC Sc: 90.23  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGAAGAGCGCTCGGCTTGCACCCGAGAG...........GtCCCGGGTTCAAATCCCGGCCGGTCCACCA chr.trna12-AlaTGC Sc: 92.62  



Arg tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........<<.<<<<<<<<<<....
GGGCCCGTAGTCTAGCCaGGAtAGGACGCCGGCCTGCGGAGCCGGTA...........GtCCGGGGTTC...AAATCC.CCGCGGGCCCGCCA chr.trna30-ArgGCG Sc: 85.42  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........<<.<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGAcAGAGCGCCGGCCTCCGGAGCCGGAG...........GtCCCGGGTTC...AAATCC.CGGCGGGCCCGCCA chr.trna18-ArgCCG Sc: 93.48  
>>>>>>>..>>.>..........<.<<.>>.>>.......<<.<<................>>>>>..........<<.<<<<<<<<<<....
GAGCCCGTAGCCCAGCCaGGAcAGAGCGCCAGCCTCCGGGGCCGGAG...........GtCCCAGGTTCtcgGAGCCCgTGGCGGGCTCG... chr.trna35-ArgCCG Sc: 41.58  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........<<.<<<<<<<<<<....
GGGCCCGTAGCCTAGCCaGGAtAGGGCGCCGGCCTTCGGAGCCGGAG...........GtCCGGGGTTC...AAATCC.CCGCGGGCCCGCCA chr.trna31-ArgTCG Sc: 90.03  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........<<.<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGAtAGAGCGCCGGCCTCCTAAGCCGGTG...........GtCGGGGGTTC...AAATCC.CCCCGGGCCCGCCA chr.trna34-ArgCCT Sc: 91.62  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>..........<<.<<<<<<<<<<....
GGGCCCGTAGCCTAGCCaGGAtAGGGCGCCGGCCTTCTAAGCCGGTA...........GtCCGGGGTTC...AAATCC.CCGCGGGCCCGCCA chr.trna21-ArgTCT Sc: 88.28  



Asn tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCGGGtA.GAGCGCCGGGCTGTTAACCCGGTG...........GtCGGTGGTTCGAATCCACCCGGCGGCGCCA chr.trna14-AsnGTT Sc: 83.72  



Asp tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGTATAGCCtGGCccAGTATGCGGGCCTGTCAAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGCGGCGCCA chr.trna25-AspGTC Sc: 84.07  



Cys tRNAs



>>>>>>>..>>>............<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGGGTGGCCGAGCGGTcaA.AGGCGGCGGGCTGCAGtgcctagcacccgcccatcgtggaaACCCGTTG...........AtCCCGGGTTCAAATCCCGGCCCCGGCTCCA chr.trna44-CysGCA Sc: 68.46  



Gln tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>..............................<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCGGGTCGTCTAGCGGCcaA.GGATGCGGGGCTCTGG.......................CCCCCGTG...........ACCGGGGTTCGAATCCCCGCCCGGCTACCA chr.trna22-GlnCTG Sc: 69.66  

>>>>>>>..>>>>..........<<<<.>>>>>..............................<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCGGGTCGTCTAGCGGCcaA.GGATGCGGGGCTTTGGgccggccggctggccgggaggaaCCCCCGTG...........ACCGGGGTTCGAATCCCCGCCCGGCTACCA chr.trna10-GlnTTG Sc: 61.35  



Glu tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGTATAGCCcGGCcaAGTATGCGGGCCTCTCGAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGCGGCACCA chr.trna27-GluCTC Sc: 83.19  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCGCGGTAGTATAGCCcGGCcaAGTATGCGGGCCTTTCAAGCCCGTG...........ACCCGGGTTCAAATCCCGGCCGCGGCACCA chr.trna41-GluTTC Sc: 84.11  



Gly tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTCGTCTAGCCtGGActAGGACGCCGGCCTGCCAAGCCGGCG...........AtCCCGGGTTCAAATCCCGGCCGCCGCACCA chr.trna42-GlyGCC Sc: 89.59  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTCGTCTAGCCtGGActAGGACGCCGGCCCCCCAAGCCGGTC...........A.CCCGGGTTCAAATCCCGGCCGCCGCACCA chr.trna39-GlyCCC Sc: 78.65  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCGGTCGTCTAGCCtGGActAGGACGCCGGCCTTCCAAGCCGGTG...........AtCCCGGGTTCAAATCCCGGCCGCCGCACCA chr.trna37-GlyTCC Sc: 91.23  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCGGGAGAGCGCGGGGCTGTGGACCCCGAG...........GtCCCGGGTTCAAATCCCGGCGGCGGCCCCA chr.trna1-HisGTG Sc: 87.19  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCcGGCGGAGCGCCCGGCTGATAACCGGGAG...........GtCGGGGGTTCAAATCCCCCCGGGCCCACCA chr.trna11-IleGAT Sc: 89.43  




Leu tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTGAGGACCCGCTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna46-LeuGAG Sc: 78.83  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTCAGGACCCGCTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna24-LeuCAG Sc: 78.91  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTTAGGACCCGCTGGCGTAG....GCCTgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna5-LeuTAG Sc: 79.47  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcgAAGGGGGCGGGCTCAAGACCCGCTGGCGTAG....GCCGgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna29-LeuCAA Sc: 77.04  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGGGTGCCCGAGCCaGGTcaAAGGGGGCGGGCTTAAGACCCGCTGGCGTAG....GCCGgCGTGGGTTCAAATCCCAC.CCCCCGCACCA chr.trna40-LeuTAA Sc: 81.30  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>.>>................................<<.<<....>........<.....>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCtGGTAGAGCGGCGGGCTCTTAacccgtagaccagcgggccttcaggCCTGGCTGGGCG.......GAAGtCCCGGGTTCGAATCCCGGCGGGCCCGCCA chr.trna33-LysCTT Sc: 92.49  

>>>>>>>..>>>>.........<<<<.>>>>>................................<<<<<...................>>>>>.......<<<<<<<<<<<<....
GGGCCGGTAGCTCAGCCtGGCAGAGCGGCGGGCTTTTA.........................ACCCGTAG..............GtCCCGGGTTCAAATCCCGGCCGGCCCGCCA chr.trna28-LysTTT Sc: 93.04  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>..........................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCcGGT.AGAGCGCCCGGCTCATA...................................................ACCGGGTG...........GtCGGGGGTTCAAATCCCCCCGGGCCCACCA chr.trna15-MetCAT Sc: 94.65  
AGCGGGGTAGGGTAGCCtGGT.AGCCCGCGGGGCTCATA...................................................ACCCCGAG...........GtCGGTGGTTCAAATCCACCCCCCGCTACCA chr.trna13-MetCAT Sc: 81.28  
GCCGCCGTAGCTCAGCGcGGTcAGAGCGCCGGACTCATAcggggctccccggtccacagccccggagtcggcctcgggggtccctgggggATCCGGTG...........GtCCCGGGTTCAAGTCCCGGCGGCGGCACCA chr.trna26-MetCAT Sc: 75.80  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCGGGA.GAGCGCCCGGCTGAAGACCGGGCG...........GtCCGGGGTTCGAATCCCCGCGGCGGCACCA chr.trna9-PheGAA Sc: 86.53  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>...........................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTCGTCTAGCCtGGCAGGATGCCAGCCTGGGGacgcaccccgccgcccgaaagggcgggcgccagag.CGCTGGTG...........GtCCCGGGTTCAAATCCCGGCGGCCCCACCA chr.trna17-ProGGG Sc: 73.09  

>>>>>>>..>>>>.........<<<<.>>>>>...........................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCTtGGTAGGATGCGGGGTACACAgctcccgccagggcgcggggctgtgcccgactcgggACCCCGTG...........GtCCCGGGTTCAAATCCCGGCGGGCCCACCA chr.trna7-ProCGG Sc: 86.54  

>>>>>>>..>>>>.........<<<<.>>>>>...........................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTCGTCTAGCTtGGCAGGATGCGGGGCTTGGG....................................CCCCCGTG...........GtCCGGGGTTCAAATCCCCGCGGCCCCACCA chr.trna23-ProTGG Sc: 82.99  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>..............<<<.>>>>>........................................<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGCCCGAGC..GGTccA.AGGGGCCGGCCTGGAG.................................AGCCGGTGGCC..GACAa.....GGCCgCGCGGGTTCAAATCCCGC.CCCCGGCGCCA chr.trna20-SerGGA Sc: 75.63  

>>>>>>>..>>>..............<<<.>>>>>........................................<<<<<..>>>>>........<<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGGCCGAGC..GGTccA.AGGCGGTGGGCTCGAGacccaggttttccggcttggtaggggctgggagACCCACT.GCCCCGTAA....GGGGCG.CGCGGGTTCAAATCCCGC.CCCCGGCGCCA chr.trna4-SerCGA Sc: 67.92  

>>>>>>>..>>>..............<<<.>>>>>........................................<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTGCCCGAGC..GGTccA.AGGGGCCGGCCTTGAG.................................AGCCGGTGGCC..GACAa.....GGCCgCGCGGGTTCAAATCCCGC.CCCCGGCGCCA chr.trna19-SerTGA Sc: 76.26  


>>>>>>>..>>>>............<<<<.>>>>>........................................<<<<<..>>>............<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGGGTCGCCTAGCCtGGT..A.GGGCGCCGGCCTGCTA.................................AGCCGGTGGGG..GTCCac....CCCG.CGCGGGTTCAAATCCCGC.CCCCGGCGCCA chr.trna8-SerGCT Sc: 82.71  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>......................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCCtGGCG.GAGCGCCGCCCTGGTA...............................AGGCGGAG...........GtCCCGGGTTCAAATCCCGGCGGCGGCTCCA chr.trna6-ThrGGT Sc: 91.08  

>>>>>>>..>>>>..........<<<<.>>>>>......................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGCT.GGCA.GAGCACCGGCCTCGTAagcccgcctggtgtcccgcgggttccgagggAGCCGGGG...........GtCCCGGGTTCAAATCCCGGCGGCGGCTCCA chr.trna32-ThrCGT Sc: 75.56  

>>>>>>>..>>>>..........<<<<.>>>>>......................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTAGCTCAGC..GGTA.GAGCGCCGGCCTTGTA...............................AGCCGGTG...........GtCGCGGGTTCGAATCCCGCCGGCGGCTCCA chr.trna45-ThrTGT Sc: 93.36  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>..............................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCTCAGCCaGGCAGAGCGCCGGGCTCCAGaccggcacctccggtccaggcgccgggtctgtcgaaaacgggatgagagggagagACCCGGAG...........GtCGGGGGTTCAAATCCCCCCGGGCCCACCA chr.trna16-TrpCCA Sc: 81.27  



Tyr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>..................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
CCCGCCGTAGCTCAGCGGCA.GAGCGCCCGGCTGTAGgtggggcgggtaggccccccgcgcgcccgacaaccccgcaatggggagcggatgagggcgcgtcggcatagcagcgggggccgcagcagaaACCGGGCG...........GtCCGGGGTTCGAATCCCCGCGGCGGGACCA chr.trna38-TyrGTA Sc: 71.67  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTGACACGGCGGAG...........GtCCGGGGTTCAAATCCCCGCGGGCCCACCA chr.trna2-ValGAC Sc: 88.31  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTCACACGGCGGAG...........GtCCGGGGTTCAAATCCCCGCGGGCCCACCA chr.trna43-ValCAC Sc: 88.39  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTCGTCTAGCCtGGTtAGGACGCCGCCCTTACACGGCGGAG...........GtCCGGGGTTCAAATCCCCGCGGGCCCACCA chr.trna3-ValTAC Sc: 88.94

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.