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tRNAscan-SE Analysis of Homo sapiens (hg19 - NCBI Build 37.1 Feb 2009)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 1 17052061 17052133 View Pseudo CAC tgtatgtgca tggttttttg 0 0 30.83 28.30 2.53 Eufind chr1 2 17053780 17053850 View Gly CCC gtgtgtagag gcaggtactt 0 0 63.06 56.17 6.89 Eufind chr1 3 17186693 17186765 View Pseudo CAC tgtatatgca tcgtgttttg 0 0 41.96 41.19 0.77 Both chr1 4 17188416 17188486 View Gly CCC ttacgcagag aaagggtctt 0 0 78.31 58.27 20.04 Both chr1 5 17199078 17199149 View Glu TTC ctcctgtgtg ttgttttaca 0 0 75.96 49.95 26.01 Both chr1 6 17201958 17202031 View Asn GTT gattgaggtt tgattttaaa 0 0 56.35 47.55 8.80 Eufind chr1 7 17216172 17216245 View Asn GTT ggaagcgctt cttattggaa 0 0 80.35 57.09 23.26 Both chr1 8 39970195 39970267 View Pseudo CTT cagtattgcc tcagatgaag 0 0 46.90 49.65 -2.75 Eufind chr1 9 94313129 94313213 View Arg TCT tccaacaggt taacgctttt 94313166 94313177 71.18 52.88 18.30 Both chr1 10 143690028 143690101 View Asn GTT agccattgga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 11 144301611 144301684 View Asn GTT agcagtgctt cttattggaa 0 0 60.57 47.82 12.75 Both chr1 12 144481840 144481913 View Asn GTT agcagtgctt cttattggaa 0 0 53.66 40.91 12.75 Both chr1 13 145385729 145385804 View Asn GTT aaccattaga gtacctttta 0 0 44.21 24.87 19.34 Eufind chr1 14 145941579 145941649 View Pseudo CCT actcagtgga ggccttctta 0 0 34.62 33.59 1.03 Eufind chr1 15 145963304 145963375 View Gln CTG tgcacgatga ttctgtttaa 0 0 70.16 46.87 23.29 Both chr1 16 146544773 146544844 View His GTG cttgtggccc aagttgctcg 0 0 64.63 37.18 27.45 Both chr1 17 146550178 146550249 View Pseudo TTC ctcctgtgcc ttgttttgca 0 0 23.38 20.09 3.29 Eufind chr1 18 147483291 147483361 View Pseudo CCT actcagtgga ggccttctta 0 0 34.62 33.59 1.03 Eufind chr1 19 147505038 147505109 View Gln CTG tgcacgatga ttctgtttaa 0 0 70.16 46.87 23.29 Both chr1 20 147719029 147719102 View Asn ATT gctagtacct cctgttctag 0 0 52.07 42.81 9.26 Eufind chr1 21 147753471 147753542 View His GTG cctgtggctc atgtcgttag 0 0 64.63 37.18 27.45 Both chr1 22 147800937 147801008 View Gln CTG tgcattgtga ttctgtgtaa 0 0 56.30 36.28 20.02 Both chr1 23 147825689 147825760 View Pseudo CTG ctcaacagct tggtgtctgc 0 0 43.68 40.06 3.62 Eufind chr1 24 147877537 147877610 View Asn GTT agccattgga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 25 148000805 148000878 View Asn GTT gacagtacct cttgttcgag 0 0 72.61 55.89 16.72 Both chr1 26 148248115 148248188 View Asn GTT aacagtacct cctctttgag 0 0 82.24 58.97 23.27 Both chr1 27 149079364 149079435 View Pseudo CTG gctagtgtga ttctgtataa 0 0 39.31 36.06 3.25 Eufind chr1 28 149186125 149186196 View Gln CTG cgcattgtga ttctgtttaa 0 0 68.84 45.55 23.29 Both chr1 29 149334272 149334340 View Glu CTC gctttgtggt ctgggtctcg 0 0 21.64 14.69 6.95 Eufind chr1 30 149608609 149608682 View Asn GTT agccattaga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 31 149719802 149719870 View Glu TTC gctttgtggt ctgggtctcg 0 0 21.27 14.33 6.94 Eufind chr1 32 153643726 153643797 View Met CAT agttctagat tcggagtttt 0 0 68.98 40.96 28.02 Both chr1 33 161390661 161390733 View Pseudo ??? aagctgtctc gtttgcttct 0 0 36.03 34.73 1.30 Eufind chr1 34 161411323 161411405 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 35 161413094 161413164 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 36 161418741 161418823 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 37 161420467 161420537 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 38 161426122 161426204 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 39 161427898 161427968 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 40 161433532 161433614 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 41 161435258 161435328 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 42 161440913 161440995 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 43 161450356 161450426 View Gly GCC tgccatcagt gcacgccctc 0 0 69.02 51.48 17.54 Both chr1 44 161492935 161493006 View Pseudo GTC gcagttgcca gtcacgggaa 0 0 27.96 25.15 2.81 Eufind chr1 45 161500903 161500974 View Gly TCC aaccgggtac agggtttttg 0 0 73.26 52.83 20.43 Both chr1 46 161501915 161501986 View Asp GTC ttcccggttg attacagttg 0 0 34.08 15.65 18.43 tRNAscan chr1 47 161510031 161510104 View Asn GTT gccaacgccc gaagtcgcat 0 0 83.66 60.39 23.27 Both chr1 48 161574588 161574659 View Asp GTC gcagttgcca gttacggaaa 0 0 30.22 23.50 6.72 Eufind chr1 49 161582508 161582579 View Glu TTC aaccggggac acgtttttgt 0 0 54.07 47.64 6.43 Eufind chr1 50 161591465 161591538 View Asn GTT gccaacgccc gaagtcccac 0 0 49.69 39.16 10.53 Eufind chr1 51 165566150 165566222 View Pseudo CTT aaaacggggt ctgtgtttcc 0 0 42.42 38.86 3.56 Eufind chr1 52 167683962 167684033 View Pro CGG tgccgagagc aggcttttac 0 0 76.52 54.46 22.06 Both chr1 53 178678038 178678110 View Pseudo ??? ttgtttagga ctttctcttt 0 0 21.44 27.58 -6.14 Eufind chr1 54 204475655 204475727 View Lys TTT cttcgggagc tttgtagttt 0 0 83.80 62.78 21.02 Both chr1 55 205443271 205443343 View Lys TTT aggcaggtga tcctattttg 0 0 62.89 51.95 10.94 Eufind chr1 56 222638347 222638419 View Thr TGT gcctcacgtg cctgttggct 0 0 83.03 60.49 22.54 Both chr1 57 238105862 238105933 View Pseudo TGG gaccttactt aactaagagg 0 0 33.27 5.98 27.29 Both chr1 58 249168054 249168159 View Leu CAA gcttccgagt cattcgtttt 249168092 249168113 65.69 45.28 20.41 Both chr1 59 249168447 249168518 View Glu CTC catcatgtct gtaagccgtt 0 0 71.50 52.78 18.72 Both chr1 60 238107030 238106956 View Pseudo TAA aacagggttt atatgcctat 0 0 29.87 1.94 27.93 Both chr1 61 207178230 207178154 View Pseudo TGG tccccatcag cttataacct 0 0 23.61 27.10 -3.49 Eufind chr1 62 204476230 204476158 View Lys TTT gtctacggga tcttgttctc 0 0 83.80 62.78 21.02 Both chr1 63 180184348 180184276 View Val AAC atgagagggt agcagttatt 0 0 48.28 36.25 12.03 Eufind chr1 64 172157607 172157539 View Glu TTC gaaatctcca gccagtccca 0 0 26.19 14.75 11.44 Eufind chr1 65 167684796 167684725 View Pro AGG agtttgtgtc tgttttggag 0 0 75.92 53.85 22.07 Both chr1 66 161581819 161581736 View Leu CAA caaaacgtgt acgtatgttt 0 0 59.01 37.45 21.56 Both chr1 67 161500214 161500132 View Leu CAG taaaacatgt atatgtgttt 0 0 77.22 46.89 30.33 Both chr1 68 161493707 161493637 View Gly GCC gctgacagta ctttcatttt 0 0 81.62 61.57 20.05 Both chr1 69 161440276 161440205 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 70 161439618 161439547 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 71 161439260 161439189 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 72 161432895 161432824 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 73 161432237 161432166 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 74 161431880 161431809 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 75 161425485 161425414 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 76 161424827 161424756 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 77 161424469 161424398 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 78 161418104 161418033 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 79 161417446 161417375 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 80 161417089 161417018 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 81 161410686 161410615 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 82 161410032 161409961 View Gly TCC gcgccgtgcg tcgggcggac 0 0 55.96 45.28 10.68 Eufind chr1 83 161397940 161397867 View Asn GTT attcgtgtca gctgaaattt 0 0 82.24 58.97 23.27 Both chr1 84 161391954 161391883 View Glu TTC tcaccagccc gtttgctttt 0 0 72.33 49.66 22.67 Both chr1 85 161369562 161369490 View Val CAC ccaccgcctg aagtggttcc 0 0 87.39 62.20 25.19 Both chr1 86 159111474 159111401 View Arg TCT gtgtggtgag gtcacctggc 0 0 76.29 56.97 19.32 Both chr1 87 150017452 150017382 View Ala AGC aagaattaaa caaaggtttt 0 0 48.21 38.20 10.01 Eufind chr1 88 149728341 149728271 View Pseudo CCT cataagagcc acaagttttg 0 0 21.62 25.69 -4.07 Eufind chr1 89 149711871 149711798 View Asn GTT gctcagccat tcgctggtct 0 0 71.43 52.10 19.33 Both chr1 90 149684161 149684088 View Val CAC tccgcctgtg taagtttttt 0 0 77.15 52.69 24.46 Both chr1 91 149680280 149680210 View Pseudo CCC ctagagagag agaggtattt 0 0 49.64 48.87 0.77 Eufind chr1 92 149672976 149672905 View Pseudo GAA tttccgcatc ttgttttgca 0 0 32.31 33.56 -1.25 Eufind chr1 93 149670130 149670057 View Asn GTT aactgaggtt tgcttttaaa 0 0 46.92 38.13 8.79 Eufind chr1 94 149664427 149664355 View Glu TTC tgctgttgtt tacatgcttt 0 0 40.45 33.79 6.66 Both chr1 95 149615690 149615617 View Asn GTT agcagtgctt cttattggaa 0 0 60.57 47.82 12.75 Both chr1 96 149343151 149343081 View Pseudo CCT cataagagcc acaagttttg 0 0 27.53 26.26 1.27 Eufind chr1 97 149326345 149326272 View Asn GTT gctcagccat tcgctgatct 0 0 59.90 40.57 19.33 Both chr1 98 149298627 149298555 View Val CAC tccgcgtgtg gaggtttttt 0 0 82.06 59.39 22.67 Both chr1 99 149294736 149294666 View Val CAC ctggggagag agaggttctt 0 0 60.62 54.90 5.72 Eufind chr1 100 149287430 149287359 View Pseudo GAA tttccgcatc ttgttttgca 0 0 32.35 31.31 1.04 Eufind chr1 101 149284576 149284503 View Asn GTT aactgaggtt tgcttttaaa 0 0 51.19 42.40 8.79 Eufind chr1 102 149278857 149278785 View Pseudo TTC tgctgttgtt tacatgcttt 0 0 35.32 33.32 2.00 Eufind chr1 103 149230643 149230570 View Asn GTT ggtagtgctt ctgattgcaa 0 0 77.16 55.90 21.26 Both chr1 104 149212021 149211948 View Pseudo GTT tacactacgt gctgctgctc 0 0 41.72 39.99 1.73 Eufind chr1 105 149161699 149161628 View Pseudo TTC gagatttctg tgacttttgc 0 0 41.70 39.78 1.92 Eufind chr1 106 149155899 149155828 View His GTG cctgtggctc atgtcgttct 0 0 61.09 38.72 22.37 Both chr1 107 148760429 148760356 View Asn GTT gacagtacct cttgtttgag 0 0 80.52 57.26 23.26 Both chr1 108 148598387 148598314 View Asn GTT gacagtacct cttgtttgag 0 0 80.52 57.26 23.26 Both chr1 109 147851133 147851060 View Pseudo GTT tacaatacct cctcctccag 0 0 34.29 34.99 -0.70 Eufind chr1 110 147781101 147781030 View Pseudo TTC tgggtcagct tacattttgt 0 0 43.43 39.38 4.05 Eufind chr1 111 147774916 147774845 View His GTG cctgtggctc atgtcgttag 0 0 64.63 37.18 27.45 Both chr1 112 147737453 147737382 View Gln CTG tatgttgcat ttgtgtttca 0 0 68.84 45.55 23.29 Both chr1 113 147520840 147520767 View Asn GTT agtagttctt cttgctctag 0 0 70.44 53.85 16.59 Both chr1 114 146476831 146476760 View Gln CTG gctagtgtga ttctgtataa 0 0 40.01 30.12 9.89 Eufind chr1 115 145979107 145979034 View Asn GTT agtagttctt cttgctctag 0 0 70.44 53.85 16.59 Both chr1 116 145399304 145399233 View Glu CTC gttagcagct agagtaacat 0 0 76.61 53.94 22.67 Both chr1 117 145397935 145397864 View Gly TCC tatttcagat gtgtcagttt 0 0 73.26 52.83 20.43 Both chr1 118 145396952 145396881 View His GTG ttagtggctc ggtggttcta 0 0 64.63 37.18 27.45 Both chr1 119 145395594 145395522 View Lys CTT agtaatcagt ctgtgttttt 0 0 80.47 57.81 22.66 Both chr1 120 145379391 145379320 View Gln CTG gctagtgtga ttctgtataa 0 0 44.40 36.15 8.25 Eufind chr1 121 144839507 144839436 View Gln CTG gctagtgtga ttctgtataa 0 0 44.40 36.15 8.25 Eufind chr1 122 144488916 144488843 View Asn GTT agccattaga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 123 144308687 144308614 View Asn GTT agccattaga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 124 143879905 143879832 View Asn GTT gctcagccat tcgctgatat 0 0 66.79 51.30 15.49 Both chr1 125 143663631 143663558 View Pseudo GTT tacaatacct cctcctccag 0 0 43.05 43.73 -0.68 Eufind chr1 126 108496345 108496275 View Pseudo ??? ggagcatggg ctgacaggct 0 0 20.67 26.68 -6.01 Eufind chr1 127 93981906 93981834 View Cys GCA aacaggtaaa tccaggatgt 0 0 74.38 55.13 19.25 Both chr1 128 55423614 55423542 View Lys CTT tgttgcaaaa ccaaattgtt 0 0 58.75 43.75 15.00 Eufind chr1 129 17180971 17180900 View Pseudo CTG gctattgtga ttctgtataa 0 0 25.51 21.41 4.10 Eufind chr1 130 17006573 17006501 View Val CAC tgcatatgca tcgtggtttg 0 0 52.98 40.16 12.82 Both chr1 131 17004836 17004766 View Gly CCC ttccagagag cgtggttgtt 0 0 69.75 57.72 12.03 Both chr1 132 16874232 16874160 View Pseudo CAC tgcatatgca tcgtgttttg 0 0 41.96 41.19 0.77 Both chr1 133 16872504 16872434 View Gly CCC ttacgcagag agagggtctt 0 0 78.31 58.27 20.04 Both chr1 134 16861845 16861774 View Glu TTC ctcctgtgtg ttgttttaca 0 0 72.33 49.66 22.67 Both chr1 135 16858966 16858893 View Asn GTT gattgaggtt tgattttaaa 0 0 48.81 40.01 8.80 Eufind chr1 136 16847153 16847080 View Asn GTT ggaagcgctt cttattggaa 0 0 77.65 54.54 23.11 Both chr1 137 7990408 7990339 View Pseudo ??? tttaggacac gccttccttc 0 0 35.54 39.08 -3.54 Eufind   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1_gl000192_random 1 468370 468443 View Asn ATT gctagtacct cctgttctag 0 0 52.07 42.81 9.26 Eufind chr1_gl000192_random 2 466149 466079 View Pseudo CCC ctagcaggag gcgtgcagtt 0 0 40.95 38.47 2.48 Both   chr2 1 11691827 11691898 View Pseudo CCC aaagacatcc ccaagaagtg 0 0 43.42 45.38 -1.96 Eufind chr2 2 27273650 27273738 View Tyr GTA cgcagcggag cttcgtctgt 27273687 27273702 75.87 49.46 26.41 Both chr2 3 27274082 27274154 View Ala AGC agcagcaggc ctcagctttt 0 0 63.68 41.02 22.66 Both chr2 4 30277568 30277640 View Leu AAG atcaggctca gtgggactac 0 0 46.12 31.06 15.06 Eufind chr2 5 43037676 43037768 View Ile TAT attcagcaga agaccctttt 43037714 43037732 68.11 39.92 28.19 Both chr2 6 75124046 75124114 View Glu TTC acgcactcta accagttctt 0 0 23.54 15.68 7.86 Eufind chr2 7 77895593 77895663 View Pseudo AGG ttgtgagtgt aacttttagt 0 0 30.29 32.31 -2.02 Eufind chr2 8 87339573 87339644 View Pseudo AGG ttgtgagtgt aacttttagt 0 0 37.07 37.06 0.01 Eufind chr2 9 117781417 117781491 View Pseudo TAA aacaaggttt acatgcctat 0 0 34.06 2.70 31.36 Both chr2 10 132140142 132140211 View Pseudo TGA atatcttatt cttaggtctt 0 0 27.03 9.37 17.66 Eufind chr2 11 132143133 132143204 View Pseudo TTG gaccttactt aaatatgagg 0 0 25.61 8.54 17.07 Eufind chr2 12 151219277 151219349 View Pseudo CTC aagtgtcgca ccttccttct 0 0 29.78 33.45 -3.67 Eufind chr2 13 157257281 157257352 View Ala CGC ctttcggctg aatcagccga 0 0 73.12 53.51 19.61 Both chr2 14 219110549 219110641 View Tyr ATA agttaaggtc gacaagtaca 219110586 219110605 55.93 33.83 22.10 Both chr2 15 219491132 219491207 View Pseudo CTG attattctca gttactgatt 0 0 22.40 19.00 3.40 Eufind chr2 16 224186387 224186315 View Pseudo TTT gagcataagg ttaaaatctc 0 0 34.01 35.48 -1.47 Eufind chr2 17 204229201 204229131 View Pseudo TTC ataagtcagc caagtatctt 0 0 39.76 47.73 -7.97 Eufind chr2 18 159738242 159738171 View Pseudo CTC attctaagtt ccaagaaatg 0 0 31.33 27.50 3.83 Eufind chr2 19 157257729 157257659 View Gly GCC tttgctataa agttttgact 0 0 81.62 61.57 20.05 Both chr2 20 131094772 131094701 View Glu TTC tttcagcagt caaaagtggc 0 0 76.46 53.14 23.32 Both chr2 21 131033093 131033024 View Ser TGA atatcttatt cttaggtctt 0 0 31.73 14.68 17.05 Eufind chr2 22 131029982 131029911 View Pseudo TTG gaccttactt aaatatgagg 0 0 28.85 5.17 23.68 Eufind chr2 23 117782580 117782509 View Gln TTG gaccttactc aaataagagg 0 0 33.55 13.79 19.76 Eufind chr2 24 96217265 96217194 View Pseudo CTC gttgtaagtt ccaagaaatg 0 0 23.39 40.94 -17.55 Eufind chr2 25 71273560 71273488 View Pseudo CTC gttccaagtt aaccaagtaa 0 0 22.62 23.00 -0.38 Eufind chr2 26 70664027 70663957 View Pseudo ??? tgatcttcac cttgttagct 0 0 20.34 24.35 -4.01 Eufind chr2 27 70476193 70476123 View Gly CCC catgtcaaca taggcgtttt 0 0 76.98 51.05 25.93 Both chr2 28 45937513 45937441 View Pseudo TTG acttacaaga cttgctttac 0 0 35.83 33.23 2.60 Eufind   chr3 1 13833886 13833953 View Pseudo CTA tgccgtggag catcccggct 0 0 26.42 28.86 -2.44 Eufind chr3 2 169490018 169490090 View Val AAC ccaaagtggg cactaaaaaa 0 0 86.79 61.60 25.19 Both chr3 3 184366165 184366095 View Asp GTC ggataggaag gctgttgatg 0 0 43.84 25.54 18.30 Both chr3 4 148316634 148316563 View His GTG ccagtagcat ttgtgggaac 0 0 22.51 15.06 7.45 Eufind chr3 5 148221309 148221228 View Leu AAG atggaggaga atttgtcgct 0 0 20.79 13.54 7.25 Eufind chr3 6 131950713 131950642 View Cys GCA ttaccagcat gtgcatttgt 0 0 74.20 55.02 19.18 Both chr3 7 131948015 131947944 View Cys GCA ttggcatcaa atgacatact 0 0 74.42 58.96 15.46 Both chr3 8 125413248 125413177 View Glu CTC gttctaagtt ccaagaaatg 0 0 29.87 16.28 13.59 Eufind chr3 9 106620949 106620878 View Pseudo TTG gaccttagta aaataagagg 0 0 32.34 6.11 26.23 Both chr3 10 103879595 103879524 View Pseudo CTC ttttttatta ccaagaaatg 0 0 25.40 25.15 0.25 Eufind chr3 11 45730563 45730491 View Arg ACG tagcaagtcg cgatgtctgt 0 0 68.07 51.18 16.89 Both chr3 12 17741464 17741392 View Pseudo GCA aacaggtgaa tttctcactt 0 0 36.14 39.20 -3.06 Eufind   chr4 1 156383888 156383959 View Pseudo TTG gaccttaatc aaattagagg 0 0 20.26 -1.82 22.08 Eufind chr4 2 156385052 156384978 View Leu TAA aacagggttt atatggctat 0 0 48.70 14.73 33.97 Both chr4 3 124430076 124430005 View Cys GCA aagcagtggt ctgtgctctg 0 0 77.71 58.47 19.24 Both chr4 4 40908815 40908743 View Gln TTG ggagagagga aaatgtttcc 0 0 31.57 26.05 5.52 Both chr4 5 7325909 7325838 View Pseudo TTA aggctgccga cctgctggtt 0 0 21.73 38.92 -17.19 Eufind   chr5 1 151988596 151988771 View Pseudo ACA atattcgggg ttaatgagct 151988632 151988735 29.48 30.37 -0.89 Eufind chr5 2 180524070 180524142 View Val CAC catcaagccg gttccttcta 0 0 87.39 62.20 25.19 Both chr5 3 180528840 180528921 View Leu AAG ccagaaggag gcttgttgtg 0 0 71.96 50.58 21.38 Both chr5 4 180591154 180591226 View Val AAC acgcgtgcaa gaatcttatg 0 0 86.79 61.60 25.19 Both chr5 5 180596610 180596682 View Val AAC acgcgtgcaa gactcttatg 0 0 86.79 61.60 25.19 Both chr5 6 180600650 180600722 View Val CAC tcccatgcag cctccttctg 0 0 87.39 62.20 25.19 Both chr5 7 180614701 180614782 View Leu AAG gcggcaaaga gtttgtggta 0 0 69.84 50.16 19.68 Both chr5 8 180633868 180633939 View Ala TGC gagagtaggt gtgtagtttt 0 0 74.45 50.86 23.59 Both chr5 9 180634755 180634827 View Lys CTT gtcatcgggc gcaactggtc 0 0 80.47 57.81 22.66 Both chr5 10 180649467 180649395 View Val CAC agccaaggtg cgttttggtc 0 0 87.39 62.20 25.19 Both chr5 11 180649051 180648979 View Lys CTT agacatggcc taatttcgct 0 0 80.47 57.81 22.66 Both chr5 12 180645342 180645270 View Val AAC ctccgcatct agactgtgtt 0 0 86.79 61.60 25.19 Both chr5 13 180618758 180618687 View Thr TGT accaacagcc gcttccgtct 0 0 75.64 49.16 26.48 Both chr5 14 180615925 180615854 View Pro TGG ctagacagcc actttttcat 0 0 76.15 54.09 22.06 Both chr5 15 180615488 180615416 View Val AAC gtaggtgtgg tgccacagtg 0 0 84.70 59.52 25.18 Both chr5 16 180601125 180601044 View Leu AAG cccggaggaa gcttgttgtg 0 0 71.96 50.58 21.38 Both chr5 17 180591645 180591564 View Pseudo AAG ccaggagaaa acttgttgtg 0 0 25.68 29.21 -3.53 Eufind chr5 18 180529325 180529253 View Val CAC catcaagccg gttccttcta 0 0 87.39 62.20 25.19 Both chr5 19 180524555 180524474 View Leu AAG ccagaaggag gcttgttgtg 0 0 71.96 50.58 21.38 Both chr5 20 159392118 159392041 View Leu CAG tatttattga ttctcagctg 0 0 20.45 13.88 6.57 Eufind chr5 21 151248145 151248074 View Pseudo CTG ggatatcatg cttactagtt 0 0 25.76 25.63 0.13 Eufind chr5 22 141774059 141773988 View Asp GTC aagactgtcg gcagcagtcc 0 0 54.87 35.22 19.65 Eufind chr5 23 77318848 77318776 View Pseudo TTG accctgggga gttactagct 0 0 24.04 26.39 -2.35 Eufind chr5 24 26198611 26198539 View Lys CTT atgaaatcaa ccagatgaag 0 0 53.34 37.86 15.48 Eufind   chr6 1 18836402 18836473 View Gln CTG cagggaggag ttcatattgg 0 0 73.65 50.36 23.29 Both chr6 2 26286754 26286825 View Met CAT ctggcagaac ggtccttttt 0 0 68.98 40.96 28.02 Both chr6 3 26299905 26299977 View Arg TCG aactgcgggg agtggggttc 0 0 69.55 49.67 19.88 Both chr6 4 26323046 26323118 View Arg TCG tgtaacccgg tttgagatac 0 0 72.33 51.13 21.20 Both chr6 5 26327817 26327898 View Ser AGA tttggtatct gcagtgggtt 0 0 88.01 56.90 31.11 Both chr6 6 26328368 26328440 View Arg ACG gttcgtcaga ttcgacttta 0 0 72.37 52.49 19.88 Both chr6 7 26521436 26521518 View Leu CAG gcataagcgc gttcgtactt 0 0 77.22 46.89 30.33 Both chr6 8 26537726 26537798 View Arg ACG ggtacgcgca gtgtaagcag 0 0 72.37 52.49 19.88 Both chr6 9 26538282 26538354 View Val CAC cccttagtgg cgtttttttt 0 0 87.39 62.20 25.19 Both chr6 10 26553731 26553802 View Ala CGC tcttagggta agttgtttta 0 0 78.91 55.32 23.59 Both chr6 11 26554350 26554423 View Ile AAT ggagacaggt actttgtttt 0 0 80.66 62.17 18.49 Both chr6 12 26555498 26555569 View Pro AGG atgctcaggc tagttttgtc 0 0 75.92 53.85 22.07 Both chr6 13 26556774 26556846 View Lys CTT gttcgggtga ctctggtttt 0 0 80.47 57.81 22.66 Both chr6 14 26569086 26569176 View Tyr GTA tcgtgtgaat gttcacaatt 26569123 26569140 76.45 50.04 26.41 Both chr6 15 26575798 26575887 View Tyr GTA gctaggggtc cgaaagtttt 26575835 26575851 72.82 50.88 21.94 Both chr6 16 26577332 26577420 View Tyr GTA cgttccgtgt cggtagtttt 26577369 26577384 77.01 52.31 24.70 Both chr6 17 26595102 26595190 View Tyr GTA gtaatgacat gttccatttt 26595139 26595154 73.91 49.21 24.70 Both chr6 18 26673590 26673662 View Ala AGC tccctgatat agctttatta 0 0 60.72 36.06 24.66 Both chr6 19 26682715 26682787 View Ala AGC ccctgatgtg aactttatta 0 0 62.45 37.80 24.65 Both chr6 20 26687485 26687557 View Ala AGC gccctgatgt agctttatta 0 0 63.16 38.50 24.66 Both chr6 21 26701712 26701784 View Met CAT tcaacagcaa tcacttctgc 0 0 75.06 52.49 22.57 Both chr6 22 26705606 26705678 View Ala AGC cccctgacgt agctttatta 0 0 61.81 37.15 24.66 Both chr6 23 26728256 26728328 View Ala AGC atgcggtgtg gcttctttta 0 0 54.69 35.00 19.69 Both chr6 24 26730737 26730809 View Ala AGC tatcctcagt gttccttgtc 0 0 63.36 40.25 23.11 Both chr6 25 26751918 26751990 View Ala AGC agtgtagtgt gcttctttta 0 0 46.89 33.96 12.93 Both chr6 26 26752630 26752703 View Undet ??? tttctcctct gtttcttgtc 0 0 39.46 19.95 19.51 Eufind chr6 27 26766444 26766516 View Met CAT gcacttcgtc gcttttgcaa 0 0 75.76 53.19 22.57 Both chr6 28 26780832 26780905 View Ile AAT ccgccggcgg caggcttttc 0 0 78.57 60.09 18.48 Both chr6 29 26988125 26988218 View Ile TAT gaaactgggt ttgttttcca 26988163 26988182 67.58 39.38 28.20 Both chr6 30 27059521 27059592 View Pro CGG atttctaagt acttcatttt 0 0 71.93 50.03 21.90 Both chr6 31 27065085 27065166 View Ser GCT gggttatcaa ggggaggtct 0 0 88.12 59.22 28.90 Both chr6 32 27118022 27118094 View Val CAC catggaatga cattttaggc 0 0 56.94 47.67 9.27 Eufind chr6 33 27125906 27125977 View His GTG ctggtggcgt gtaccttgat 0 0 64.63 37.18 27.45 Both chr6 34 27130050 27130123 View Thr AGT gcccaacagg tacgtgttca 0 0 80.30 60.85 19.45 Both chr6 35 27177628 27177709 View Ser CGA catttagagg cttctcggta 0 0 90.35 61.17 29.18 Both chr6 36 27182952 27183024 View Arg ACG gcgcaaccga ggtgttaatc 0 0 68.07 51.18 16.89 Both chr6 37 27203288 27203360 View Val AAC cactaagcga gagcgtagtt 0 0 74.63 59.79 14.84 Both chr6 38 27241739 27241812 View Ile AAT ccaaaatgtt catattttcc 0 0 75.35 57.39 17.96 Both chr6 39 27251864 27251937 View Pseudo AAT ttcgcgtcgt cagtgggtgt 0 0 44.67 41.41 3.26 Eufind chr6 40 27258405 27258477 View Val TAC cagcacacag acttgcaatt 0 0 76.42 49.86 26.56 Both chr6 41 27261671 27261744 View Pseudo ACT atttgcggtc ttggcttttt 0 0 49.68 46.01 3.67 Eufind chr6 42 27263212 27263283 View Gln CTG ttcagcttca tggatttagt 0 0 68.41 48.10 20.31 Both chr6 43 27265775 27265856 View Ser GCT tccccagaag accgttttct 0 0 86.80 59.22 27.58 Both chr6 44 27446591 27446672 View Ser AGA ctccattcgt ggatgtttta 0 0 88.01 56.90 31.11 Both chr6 45 27447453 27447524 View Asp GTC tcacgtcaat gaggcttaaa 0 0 72.92 48.38 24.54 Both chr6 46 27463593 27463674 View Ser AGA ttccacagct gggtggtttt 0 0 88.01 56.90 31.11 Both chr6 47 27470818 27470899 View Ser AGA gtgattctgt agttcgaggt 0 0 88.01 56.90 31.11 Both chr6 48 27471523 27471594 View Asp GTC gcagagttct aaaagttgct 0 0 72.92 48.38 24.54 Both chr6 49 27487308 27487379 View Gln CTG gctattgcga gtcgtttctt 0 0 73.65 50.36 23.29 Both chr6 50 27499987 27500068 View Ser AGA tgtccttcac gtccctttct 0 0 86.61 55.50 31.11 Both chr6 51 27513468 27513549 View Ser TGA gcgtaggtag gttttaccag 0 0 88.73 57.62 31.11 Both chr6 52 27529963 27530049 View Arg TCT agctcaagca catgttgcat 27530000 27530013 65.24 49.75 15.49 Both chr6 53 27543846 27543918 View Lys TTT tcgcaaaaga ttgagtgtag 0 0 59.40 50.33 9.07 Eufind chr6 54 27586135 27586208 View Thr CGT attctatcgt aacagactgc 0 0 63.29 43.60 19.69 Eufind chr6 55 27599200 27599293 View Ile TAT aggaaagcat tgttttcttc 27599238 27599257 68.23 40.03 28.20 Both chr6 56 27632545 27632620 View Phe GAA cttatagatg gctgtttccg 0 0 53.54 45.11 8.43 Eufind chr6 57 27636362 27636435 View Ile AAT gcattcgtgt ctggatgcca 0 0 76.09 57.61 18.48 Both chr6 58 27650488 27650561 View Val CAC ttggaagttg cctcctgaga 0 0 33.44 24.52 8.92 Eufind chr6 59 27655967 27656040 View Ile AAT cctgtcatcc agtattctct 0 0 83.32 61.08 22.24 Both chr6 60 27694473 27694546 View Thr AGT acacaggtga ctttatttct 0 0 81.60 60.97 20.63 Both chr6 61 27745664 27745735 View Met CAT gttttccgtt aagaagggtg 0 0 62.43 34.42 28.01 Both chr6 62 28180815 28180896 View Ser GCT ttctttgtgt gctgcatagc 0 0 83.46 55.88 27.58 Both chr6 63 28505367 28505460 View Ile TAT tatttctgtg gttttactat 28505405 28505424 65.86 37.67 28.19 Both chr6 64 28557156 28557227 View Gln TTG ccttgtggtt ttcaaaggtg 0 0 71.88 48.94 22.94 Both chr6 65 28574933 28575004 View Ala AGC gtctgtggtt ccagttttgg 0 0 76.69 53.05 23.64 Both chr6 66 28611222 28611293 View Ala TGC gtctatgtgt ataggtatta 0 0 78.55 54.96 23.59 Both chr6 67 28678366 28678437 View Ala AGC ctagctttaa tgtattatgc 0 0 75.68 50.52 25.16 Both chr6 68 28687481 28687552 View Ala AGC ctattgcaac gtagttgata 0 0 70.19 52.06 18.13 Both chr6 69 28693795 28693868 View Thr AGT agtctccgtg tggttggcaa 0 0 82.17 62.61 19.56 Both chr6 70 28697092 28697163 View Ala CGC catgcggtca gttgtccatt 0 0 70.09 49.55 20.54 Both chr6 71 28715521 28715593 View Lys TTT tctacccagg aaatatttgt 0 0 72.00 55.95 16.05 Both chr6 72 28732164 28732236 View Phe GAA gcttagagta ggtttgtttg 0 0 59.98 54.74 5.24 Eufind chr6 73 28849165 28849237 View Arg CCG tttggcggtt tcgttttgcg 0 0 69.88 52.79 17.09 Both chr6 74 28908830 28908934 View Leu CAA tgtcccaggt caactatctt 28908868 28908889 69.73 46.29 23.44 Both chr6 75 28912352 28912424 View Met CAT agagacagtt aggcgtctgt 0 0 76.58 56.44 20.14 Both chr6 76 28918806 28918878 View Lys TTT tttgcaggga ggagtggtgg 0 0 83.80 62.78 21.02 Both chr6 77 28949976 28950047 View Glu CTC tacttcagct tgaggttttt 0 0 76.61 53.94 22.67 Both chr6 78 28956779 28956860 View Leu AAG tgtaatcaac agtacttttc 0 0 68.10 48.42 19.68 Both chr6 79 37287995 37288067 View Gln TTG gttagggact ctttcctaaa 0 0 21.80 12.98 8.82 Eufind chr6 80 58149254 58149327 View Ile AAT cccccggcgg caggcttttc 0 0 83.55 64.80 18.75 Both chr6 81 69914378 69914460 View Leu TAA ctcaaaaatc tgtttagttt 0 0 34.00 28.53 5.47 Eufind chr6 82 142578776 142578846 View Gly GCC ttccataggt acatggcatc 0 0 46.73 34.61 12.12 Eufind chr6 83 144537684 144537766 View Leu TAA caacgtctgc gctttaggtt 0 0 80.77 49.66 31.11 Both chr6 84 145503859 145503930 View Gln TTG attttggatt ttcaaaggag 0 0 59.31 47.11 12.20 Both chr6 85 163210082 163210014 View Pseudo TTC gagcatgcac gcttttcttc 0 0 22.25 19.82 2.43 Eufind chr6 86 156869120 156869046 View Pseudo TAC aacagagtct acgtgcccat 0 0 31.66 3.73 27.93 tRNAscan chr6 87 126101464 126101393 View Glu CTC ttgtgcaagt gtcttgtttt 0 0 76.61 53.94 22.67 Both chr6 88 79668082 79668010 View Pseudo GAA tttaagagta gaaacagttc 0 0 43.56 40.97 2.59 Eufind chr6 89 58196695 58196623 View Ala AGC tccctgatat agctttatta 0 0 57.89 37.78 20.11 Both chr6 90 58187516 58187444 View Ala AGC ccctgatgtg aactttatta 0 0 54.84 36.17 18.67 Both chr6 91 58182751 58182679 View Ala AGC cccctgatgt agctttatta 0 0 62.45 37.80 24.65 Both chr6 92 58168564 58168492 View Met CAT tcaacagcaa tcacttttgc 0 0 64.33 46.12 18.21 Both chr6 93 58164700 58164628 View Ala AGC cccctgacgt agctttatta 0 0 61.81 37.15 24.66 Both chr6 94 58142661 58142589 View Ala AGC agtgtagtgt gcttctttta 0 0 54.62 37.98 16.64 Both chr6 95 58141949 58141877 View Ala AGC tttctccctc gtttcttgtc 0 0 42.26 30.05 12.21 Both chr6 96 28949521 28949449 View Phe GAA cgtgggcgga tgagagcgct 0 0 84.19 62.58 21.61 Both chr6 97 28921114 28921042 View Met CAT ctagttgtct gctgccattt 0 0 76.58 56.44 20.14 Both chr6 98 28911480 28911399 View Leu AAG ccctgtgggt gtgtgaggta 0 0 69.84 50.16 19.68 Both chr6 99 28909449 28909378 View Gln CTG tgttaagtag ttcatttctc 0 0 73.65 50.36 23.29 Both chr6 100 28864105 28864000 View Leu CAA tatgcagtgt catacttttc 28864067 28864045 68.23 44.80 23.43 Both chr6 101 28831533 28831462 View Ala AGC ttgagcgttg gcttcatttt 0 0 77.18 53.38 23.80 Both chr6 102 28806292 28806221 View Ala AGC gtttcagtac ttccttttgc 0 0 77.18 53.38 23.80 Both chr6 103 28791166 28791093 View Phe GAA ctccagagta gatacctttt 0 0 67.94 47.06 20.88 Both chr6 104 28785083 28785012 View Ala TGC cttatagtga agcgatggtt 0 0 70.95 44.60 26.35 Both chr6 105 28779920 28779849 View Ala AGC gtcttccaga ggttttgttt 0 0 71.23 47.45 23.78 Both chr6 106 28775682 28775610 View Phe GAA gatcacggtg gttgcatttt 0 0 82.13 62.21 19.92 Both chr6 107 28770647 28770577 View Ala TGC gttatagtaa agtgatggtt 0 0 59.75 46.06 13.69 Eufind chr6 108 28763812 28763741 View Ala AGC tgagtccaga ggccgtgttt 0 0 81.12 55.59 25.53 Both chr6 109 28758571 28758499 View Phe GAA aattcgggaa gggttttttt 0 0 84.19 62.58 21.61 Both chr6 110 28757618 28757547 View Ala TGC ttttcaggaa aacggtgact 0 0 79.16 56.03 23.13 Both chr6 111 28746615 28746544 View Pseudo AGC gatctcctgc ctcttttttt 0 0 32.22 28.41 3.81 tRNAscan chr6 112 28731447 28731374 View Phe GAA gcttagagta agcatctttt 0 0 56.32 40.01 16.31 Both chr6 113 28726212 28726141 View Ala TGC ctttcaggag aatggtggtt 0 0 67.60 50.39 17.21 Both chr6 114 28710801 28710729 View Arg CCG acccgcgtgc tgttcttact 0 0 69.88 52.79 17.09 Both chr6 115 28703277 28703206 View Val AAC cattgtaagt caagtacatt 0 0 64.08 51.40 12.68 Both chr6 116 28694927 28694855 View Pseudo GAA tctacagtaa acttttcctt 0 0 27.39 35.70 -8.31 Eufind chr6 117 28663780 28663709 View Ala CGC ttgagagtca tttttccttc 0 0 56.63 43.69 12.94 Eufind chr6 118 28661060 28660987 View Pseudo TTT gctgtcgtga taaggccttg 0 0 44.65 41.67 2.98 Eufind chr6 119 28641684 28641613 View Ala CGC acttgtgcca aggcgatcac 0 0 74.81 51.23 23.58 Both chr6 120 28626085 28626014 View Ala AGC ttttcgaggt gtgtttttgt 0 0 75.78 57.59 18.19 Both chr6 121 28616057 28615984 View Thr CGT cagcacggct tagggtgtgc 0 0 80.30 62.20 18.10 Both chr6 122 28601930 28601859 View Pseudo TGC tagtgcttag ctttagcata 0 0 42.75 44.42 -1.67 Eufind chr6 123 28565198 28565117 View Ser GCT cttagcatgt tttctggagg 0 0 85.34 57.77 27.57 Both chr6 124 28510963 28510891 View Arg TCG taagccatgg attctccctt 0 0 69.08 49.20 19.88 Both chr6 125 28456843 28456770 View Thr CGT gcttccgcgt gatgttttcc 0 0 80.88 62.42 18.46 Both chr6 126 28446481 28446400 View Leu AAG ggactagcgt ggtttattgc 0 0 59.09 44.72 14.37 Both chr6 127 28442402 28442329 View Thr TGT tgcacatgta taaggttttc 0 0 84.82 62.41 22.41 Both chr6 128 27870756 27870686 View Gly GCC tgtacgcgag acgatgacgt 0 0 81.62 61.57 20.05 Both chr6 129 27870342 27870271 View Met CAT taccgtatag tttttttttt 0 0 68.98 40.96 28.02 Both chr6 130 27763711 27763640 View Gln TTG gcttataggt tcttggctct 0 0 68.31 52.31 16.00 Both chr6 131 27759206 27759135 View Gln CTG ctaagaactt agtctgctgt 0 0 66.25 50.25 16.00 Both chr6 132 27721251 27721179 View Val AAC gtaaccgttg aagagagtcg 0 0 86.79 61.60 25.19 Both chr6 133 27696399 27696327 View Val CAC tgagttaggg ttgtattgtc 0 0 64.50 50.03 14.47 Both chr6 134 27688980 27688898 View Leu TAA tgccccagtc ggttaagttt 0 0 80.48 52.10 28.38 Both chr6 135 27652547 27652474 View Thr AGT tctcggctgt tgatttctgt 0 0 83.05 63.49 19.56 Both chr6 136 27648957 27648885 View Val AAC gaaagagggt ggtaggctta 0 0 79.68 59.48 20.20 Both chr6 137 27640310 27640229 View Ser CGA tgtcctcgga tcgccatttt 0 0 89.16 57.73 31.43 Both chr6 138 27638416 27638344 View Arg ACG ttacaggcag cttgtgctct 0 0 68.07 51.18 16.89 Both chr6 139 27618779 27618707 View Val AAC cagcagggtt agtggttacc 0 0 81.58 56.46 25.12 Both chr6 140 27573524 27573417 View Leu CAA ttgtcacagt cagcctgatc 27573486 27573463 68.53 44.44 24.09 Both chr6 141 27570454 27570348 View Leu CAA aacagtgcgt cagctatttt 27570416 27570394 68.19 42.41 25.78 Both chr6 142 27560671 27560600 View Met CAT tgaaggggac ggtgcctgtt 0 0 68.98 40.96 28.02 Both chr6 143 27559665 27559593 View Lys TTT agtgtagaga aacttcagaa 0 0 83.31 61.95 21.36 Both chr6 144 27551307 27551236 View Asp GTC tgttaagtct acgaagcagt 0 0 64.62 47.56 17.06 Both chr6 145 27521273 27521192 View Ser AGA tgtcatgtct tttgaaattt 0 0 79.96 54.94 25.02 Both chr6 146 27515602 27515531 View Gln CTG taccaagagg gctcgaagat 0 0 72.00 48.70 23.30 Both chr6 147 27509635 27509554 View Ser AGA cattctttgt ataacgtttc 0 0 88.50 57.39 31.11 Both chr6 148 27473688 27473607 View Ser TGA acacaggtgc gtttggtttt 0 0 84.78 57.77 27.01 Both chr6 149 27302841 27302769 View Lys TTT tccctaagga ctaaaaatgc 0 0 81.41 62.43 18.98 Both chr6 150 27300835 27300764 View Met CAT gaaaccgctt tgagttttac 0 0 68.98 40.96 28.02 Both chr6 151 27271639 27271568 View Thr CGT tttctccgtg gggtgttttt 0 0 46.44 38.72 7.72 Eufind chr6 152 27248121 27248049 View Val CAC aaatgtcagg acctgtattt 0 0 87.34 62.56 24.78 Both chr6 153 27243063 27242990 View Ile AAT acccagcgtc cgtattttcc 0 0 82.10 61.21 20.89 Both chr6 154 27205423 27205350 View Ile AAT ttttccgggt cgagggttct 0 0 80.66 62.17 18.49 Both chr6 155 27198416 27198334 View Leu TAA ggctgttatc agcgttggtg 0 0 74.34 44.96 29.38 Both chr6 156 27181695 27181623 View Arg ACG ccacaacgac gaggcttatt 0 0 68.07 51.18 16.89 Both chr6 157 27173939 27173867 View Val CAC tcccacagtt ttctttactc 0 0 73.23 53.55 19.68 Both chr6 158 27145067 27144994 View Ile AAT ccaccaagga cttccgtggg 0 0 80.66 62.17 18.49 Both chr6 159 26796078 26796006 View Ala AGC tccctgatat aactttatta 0 0 62.45 37.80 24.65 Both chr6 160 26773843 26773771 View Ala AGC atgcggtgtg gcttctttta 0 0 54.69 35.00 19.69 Both chr6 161 26771362 26771290 View Ala AGC tatcctcagt gttccttgtc 0 0 63.36 40.25 23.11 Both chr6 162 26758622 26758550 View Met CAT atacttcgtc gcttttgcaa 0 0 75.76 53.19 22.57 Both chr6 163 26745328 26745255 View Ile AAT tagtaagcgg gacgtgactt 0 0 79.57 61.65 17.92 Both chr6 164 26735646 26735574 View Met CAT gcacttcgtc gcttttgcaa 0 0 75.76 53.19 22.57 Both chr6 165 26721294 26721221 View Ile AAT ccgccggcgg caggcttttc 0 0 78.57 60.09 18.48 Both chr6 166 26572164 26572092 View Ala AGC tttcccacac gttttatgtg 0 0 63.06 39.95 23.11 Both chr6 167 26533218 26533145 View Thr AGT caggcatggt gttgtagttt 0 0 83.05 63.49 19.56 Both chr6 168 26331743 26331672 View Trp CCA gtgtcccgga acagttttta 0 0 74.00 52.21 21.79 Both chr6 169 26330600 26330529 View Met CAT tgactcgcgt gggagcgttt 0 0 68.98 40.96 28.02 Both chr6 170 26319401 26319330 View Trp CCA gggtctccgt tgggtggttg 0 0 74.00 52.21 21.79 Both chr6 171 26313423 26313352 View Met CAT ctgtcgagac tatggccgca 0 0 68.98 40.96 28.02 Both chr6 172 26312905 26312824 View Ser TGA aaggaggtac gcgtgctttt 0 0 88.25 57.14 31.11 Both chr6 173 26312046 26311975 View Gln TTG ctgtgttgtt accaaacttt 0 0 68.31 52.31 16.00 Both chr6 174 26311495 26311424 View Gln TTG ggcggaaggc gtcctgcttt 0 0 68.31 52.31 16.00 Both chr6 175 26305801 26305718 View Ser GCT acacatatca ctcggctttc 0 0 67.16 46.87 20.29 Eufind   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr7 1 99067307 99067378 View Trp CCA aggtttccaa aacatgtgat 0 0 70.08 48.29 21.79 Both chr7 2 128423504 128423575 View Pro AGG aactaccagt tactttttct 0 0 75.92 53.85 22.07 Both chr7 3 139025446 139025518 View Arg CCT gtttgcagaa gcctgtgact 0 0 67.28 54.18 13.10 Both chr7 4 141503357 141503428 View Pseudo TTG gaccttagtt aaataacagg 0 0 34.30 8.89 25.41 Eufind chr7 5 149007281 149007352 View Cys GCA aatggcagca agttttcttc 0 0 79.54 58.90 20.64 Both chr7 6 149028220 149028291 View Cys GCA aacaaggcct actcctttta 0 0 74.20 55.02 19.18 Both chr7 7 149243631 149243702 View Cys GCA tagaagctga ggaaagagtc 0 0 69.62 50.30 19.32 Both chr7 8 149253802 149253873 View Cys GCA atgacaagca gcactttttc 0 0 59.93 49.28 10.65 Eufind chr7 9 149255133 149255205 View Tyr GTA agtgtgccat tctgttaagt 0 0 49.38 37.78 11.60 Eufind chr7 10 149281816 149281887 View Cys GCA acctatgact acactgttct 0 0 69.82 51.63 18.19 Both chr7 11 149295046 149295117 View Cys GCA atgacaagca actgcacttt 0 0 65.84 49.63 16.21 Both chr7 12 149305467 149305538 View Ser AGA tcctatgact accctgtttt 0 0 62.08 51.44 10.64 Eufind chr7 13 149332778 149332849 View Cys GCA ccctgggcct accctgtttc 0 0 74.20 55.02 19.18 Both chr7 14 149361915 149361986 View Cys GCA caccaggcaa gatgccactt 0 0 60.15 43.42 16.73 Both chr7 15 149404760 149404831 View Cys GCA acttccatca gctgtgttct 0 0 74.20 55.02 19.18 Both chr7 16 149388343 149388272 View Cys GCA tgtggcccat cgctggtttt 0 0 69.30 53.57 15.73 Both chr7 17 149344117 149344046 View Cys GCA gtaagtgggt ctctagttca 0 0 71.81 51.29 20.52 Both chr7 18 149310227 149310156 View Cys GCA gcaattacat tcctgttttc 0 0 67.69 49.50 18.19 Both chr7 19 149292376 149292305 View Cys GCA caccaggcaa gctgccactt 0 0 57.52 43.40 14.12 Both chr7 20 149286235 149286164 View Cys GCA gtagtcaaat ccctgttttc 0 0 77.55 55.23 22.32 Both chr7 21 149112300 149112229 View Cys GCA cccgtgtgac gaatagtggc 0 0 73.76 55.65 18.11 Both chr7 22 149074672 149074601 View Cys GCA tgagtacctt ctttgtcact 0 0 73.86 54.68 19.18 Both chr7 23 149072921 149072850 View Cys GCA gagtaccttg ttgtcactac 0 0 68.91 54.10 14.81 Both chr7 24 149053820 149053745 View Pseudo GTA tatactattc agaattcatt 0 0 33.50 30.21 3.29 Eufind chr7 25 149052837 149052766 View Cys GCA taatgtaact agcattttaa 0 0 71.19 49.16 22.03 Both chr7 26 57254051 57253980 View Pseudo TTG gaccttacct aaataagagg 0 0 22.05 7.43 14.62 Eufind   chr8 1 11793380 11793451 View Pseudo CTC gttctaggtc accaagaaat 0 0 26.22 24.57 1.65 Eufind chr8 2 18120203 18120272 View Pseudo TTT aggcacttga tcaatccctt 0 0 20.79 22.13 -1.34 Eufind chr8 3 59504798 59504868 View Glu CTC tgtttttctc ccaaaaaaat 0 0 33.87 25.11 8.76 Eufind chr8 4 67025602 67025694 View Tyr GTA cgtacacgtc gacaagtgcg 67025639 67025658 73.04 46.63 26.41 Both chr8 5 67026223 67026311 View Tyr GTA gtgcccgctc gagacacccc 67026260 67026275 69.69 43.28 26.41 Both chr8 6 67026424 67026496 View Ala AGC gcccagccgt gttttccttc 0 0 63.68 41.02 22.66 Both chr8 7 70072340 70072414 View Pseudo CTC gcctgatgct ggtataaagt 0 0 22.64 9.90 12.74 Eufind chr8 8 99153462 99153530 View Undet ??? acccgaagct tcccaggtgc 0 0 37.10 17.33 19.77 Eufind chr8 9 124270797 124270725 View Pseudo GAA tgagatgtca actttgtttt 0 0 20.84 22.72 -1.88 Eufind chr8 10 124169542 124169470 View Met CAT cttactaggt caataatttt 0 0 79.85 59.49 20.36 Both chr8 11 96281966 96281885 View Ser AGA cacacagcca ggaatgtcag 0 0 88.01 56.90 31.11 Both chr8 12 66609619 66609532 View Tyr GTA agtcctgccc acacctttgt 66609582 66609567 46.11 27.78 18.33 Both chr8 13 47740112 47740038 View Pseudo TAA aacagggttt atatgcctat 0 0 20.57 -5.33 25.90 tRNAscan chr8 14 32872717 32872646 View Pseudo TTG gaccttactc aaataagagg 0 0 22.66 9.08 13.58 Eufind   chr9 1 19403996 19404070 View Met CAT gagagggaac gctttgtgat 0 0 43.49 17.53 25.96 Eufind chr9 2 112960803 112960875 View Arg TCG ccaaccagct tggaggggtt 0 0 56.18 43.57 12.61 Both chr9 3 115616989 115617087 View Trp CCA tgcgttggtg tagcttgcac 115617028 115617051 23.38 12.52 10.86 Eufind chr9 4 131102445 131102355 View Arg TCT ttccgcagcc aattttgatg 131102408 131102391 67.17 46.72 20.45 Both chr9 5 126655594 126655522 View Gln CTG gtggcatgct cttactaaat 0 0 22.97 17.83 5.14 Eufind chr9 6 77518061 77517990 View Asp GTC aaaaaggcgg gctaataatg 0 0 54.95 37.92 17.03 Eufind chr9 7 14434009 14433938 View His GTG tcagtagctt ggaggggaga 0 0 64.63 37.18 27.45 Both chr9 8 5095156 5095085 View Gln TTG gaacttactt aaataagagg 0 0 21.75 10.04 11.71 Eufind   chr10 1 22852579 22852651 View Pseudo GGG acatttacaa cttcctaact 0 0 34.81 33.93 0.88 Eufind chr10 2 69524261 69524342 View Ser TGA tattctcgtg gaagcgggtg 0 0 90.86 62.33 28.53 Both chr10 3 34591483 34591416 View Pseudo CAA tgagcagcag tcaccagcct 0 0 20.90 7.97 12.93 Eufind chr10 4 22518511 22518438 View Asn GTT tgacaccgaa cgctctcctt 0 0 82.24 58.97 23.27 Both chr10 5 20036682 20036608 View Pseudo CTG tgaccttgct aattatttca 0 0 26.31 -2.56 28.87 Eufind chr10 6 5895746 5895674 View Val TAC gctagcctgt tggtgtggtc 0 0 81.67 56.63 25.04 Both   chr11 1 9296790 9296863 View Leu CAA tcttttagct aggtcacctt 0 0 60.99 46.07 14.92 Both chr11 2 51359900 51359972 View Lys CTT aaggtagaga ccagatatca 0 0 40.00 31.47 8.53 Eufind chr11 3 59318767 59318852 View Arg TCT gcacgtgtct ctttttgttt 59318804 59318816 71.13 50.68 20.45 Both chr11 4 59319228 59319310 View Leu TAA tttatcagtt aagaggagtt 0 0 79.52 46.13 33.39 Both chr11 5 59323902 59323974 View Lys TTT ttcttcaggg gatgctgttt 0 0 82.14 63.54 18.60 Both chr11 6 60763508 60763577 View Pseudo TGC attccaaccc ttttctagcc 0 0 20.74 21.12 -0.38 Eufind chr11 7 63661767 63661835 View Pseudo CCT gttcagtggg gtccttccat 0 0 21.47 23.84 -2.37 Eufind chr11 8 66115591 66115672 View Ser GCT tgtcacgtag gccctgtttt 0 0 85.83 58.25 27.58 Both chr11 9 75946557 75946628 View Pro AGG tacgagcgac tcattttctt 0 0 75.92 53.85 22.07 Both chr11 10 109036039 109036120 View Ser AGA atggtctcag agatgttttc 0 0 29.13 20.68 8.45 Eufind chr11 11 122430655 122430727 View Lys TTT gtaatgggta atggcgtttg 0 0 83.96 62.60 21.36 Both chr11 12 75946940 75946869 View Pro TGG ctcagcagat ctcttttctt 0 0 76.24 54.23 22.01 Both chr11 13 59333925 59333853 View Phe GAA ttccacggca gcgcttccgt 0 0 82.45 60.84 21.61 Both chr11 14 59327880 59327808 View Lys TTT actaccgtga gtatcttttt 0 0 83.80 62.78 21.02 Both chr11 15 59325042 59324970 View Phe GAA tcatgtcttc gaccttttgt 0 0 84.19 62.58 21.61 Both chr11 16 59318532 59318460 View Val TAC ttccgcacgc cggcgtgatt 0 0 82.67 57.63 25.04 Both chr11 17 59318174 59318102 View Val TAC agtcgtgtgg tgagatgtta 0 0 85.12 60.08 25.04 Both chr11 18 50233950 50233879 View Ala TGC cttttaggaa agtgatggtt 0 0 51.06 32.62 18.44 Both chr11 19 45290273 45290200 View Trp CCA tcccaggaag cttattaacc 0 0 21.17 15.98 5.19 Eufind   chr12 1 27843306 27843378 View Lys TTT aagagaatgc ttccctctta 0 0 49.92 36.16 13.76 Eufind chr12 2 56584148 56584229 View Ser CGA ggttttggaa ggtttttttt 0 0 89.14 63.50 25.64 Both chr12 3 74851182 74851254 View Gln CTG cctctccggt ttacctgaag 0 0 34.73 23.16 11.57 Eufind chr12 4 96429799 96429870 View Asp GTC ttcgtgcggt gcacagtaat 0 0 72.92 48.38 24.54 Both chr12 5 98897281 98897352 View Asp GTC gcctaacgac gtgtgtagct 0 0 74.76 50.21 24.55 Both chr12 6 98898030 98898101 View Trp CCA agcccagcag aacttttttt 0 0 71.65 49.85 21.80 Both chr12 7 122860924 122860994 View Asp GTC atttacaagt ccatataata 0 0 32.33 19.08 13.25 Both chr12 8 125424512 125424583 View Ala TGC acaaggggta gacttttccg 0 0 73.41 49.83 23.58 Both chr12 9 129716198 129716272 View Pseudo AAT aaagcagctg gggtttgttg 0 0 27.18 26.26 0.92 Eufind chr12 10 125424264 125424193 View Asp GTC gtacggcttg gccgggtact 0 0 72.92 48.38 24.54 Both chr12 11 125412461 125412389 View Phe GAA cgtaacggct cttcctcttt 0 0 84.19 62.58 21.61 Both chr12 12 125411962 125411891 View Asp GTC ttatgggcgg gccaagtacg 0 0 72.92 48.38 24.54 Both chr12 13 125406372 125406301 View Ala TGC ggaaagggag ttgtagtttt 0 0 74.45 50.86 23.59 Both chr12 14 114386617 114386545 View Pseudo CTC ggcctccggg cgactccaca 0 0 22.05 31.42 -9.37 Eufind chr12 15 97490764 97490691 View Pseudo TTG tactgtgaga ctatttgacc 0 0 22.16 27.13 -4.97 Eufind chr12 16 50211264 50211190 View Pseudo TTG ctggctttac ataagaggat 0 0 29.85 -4.50 34.35 Eufind   chr13 1 95201976 95201904 View Phe GAA cccagaacgt gctactttta 0 0 84.19 62.58 21.61 Both chr13 2 58458621 58458550 View Pseudo CTC tttacgaagt accaaaataa 0 0 34.44 33.04 1.40 Eufind chr13 3 45492133 45492062 View Glu TTC tattgccgtc cgccgaaatt 0 0 76.26 53.72 22.54 Both chr13 4 42030132 42030061 View Glu CTC gttctaagtt caaagaaatg 0 0 41.44 31.63 9.81 Eufind chr13 5 41634945 41634874 View Glu TTC tcatagcact cgcttcctta 0 0 76.46 53.14 23.32 Both chr13 6 36639818 36639747 View Pseudo TTG gaccttattt agataagagg 0 0 23.74 0.15 23.59 Eufind chr13 7 31248174 31248101 View Asn GTT gagtaactgg gtcagtgctt 0 0 82.24 58.97 23.27 Both   chr14 1 21078291 21078372 View Leu AAG ttagccagta ggtgcttccc 0 0 69.84 50.16 19.68 Both chr14 2 21093529 21093610 View Leu TAG taacgtgtgt gtggtacgtt 0 0 68.82 48.37 20.45 Both chr14 3 21101165 21101236 View Pro TGG ctccagttct ctttactttc 0 0 79.61 57.55 22.06 Both chr14 4 21149849 21149921 View Thr TGT ttctgcgtga tgcgaaacta 0 0 78.79 56.36 22.43 Both chr14 5 21151432 21151520 View Tyr GTA ttccgtgctt gacgctgctg 21151469 21151484 75.42 49.01 26.41 Both chr14 6 21152175 21152246 View Pro TGG cagctacagt tcgtggctac 0 0 76.15 54.09 22.06 Both chr14 7 23398910 23398982 View Arg ACG tgccatctca gtggggttcc 0 0 72.37 52.49 19.88 Both chr14 8 73429679 73429750 View Cys GCA gataggtgaa tcccggatgt 0 0 74.26 55.02 19.24 Both chr14 9 89445442 89445514 View Ala AGC aggatcacat tacgttacca 0 0 59.85 39.72 20.13 Both chr14 10 102783429 102783502 View Ile AAT aacgtcaggc ggctaacttt 0 0 80.66 62.17 18.49 Both chr14 11 78700910 78700838 View Pseudo CTA ctctcatgca cttgatgcct 0 0 26.26 34.03 -7.77 Eufind chr14 12 74055601 74055529 View Pseudo TTT aaagtaaaca ttttttttta 0 0 38.73 35.90 2.83 Eufind chr14 13 58706685 58706613 View Lys CTT cgtaacaggc cgggttgtaa 0 0 80.72 58.28 22.44 Both chr14 14 32236886 32236816 View Glu TTC aaacacatcc gcagtccctg 0 0 28.80 23.73 5.07 Eufind chr14 15 21145259 21145178 View Pseudo TAG ttagcagttt gggtcttttg 0 0 32.18 30.85 1.33 Both chr14 16 21131444 21131351 View Tyr GTA cagcgtgcac agtgcccgat 21131407 21131387 74.71 48.30 26.41 Both chr14 17 21128210 21128117 View Tyr GTA cagtgtgcat agcgcctgac 21128173 21128153 71.83 45.42 26.41 Both chr14 18 21125716 21125623 View Tyr GTA tagcatgcat agtgcgtgat 21125679 21125659 75.82 48.15 27.67 Both chr14 19 21121351 21121258 View Tyr GTA aaacgtgcgc gctgccgtat 21121314 21121294 74.71 48.30 26.41 Both chr14 20 21099391 21099319 View Thr TGT tctctgtggc cggctgtagg 0 0 79.46 56.92 22.54 Both chr14 21 21082021 21081949 View Thr TGT agcagacgag gtgtgttttt 0 0 80.94 58.40 22.54 Both chr14 22 21081631 21081560 View Pro AGG tctgtatcgc tcgctctttt 0 0 75.92 53.85 22.07 Both chr14 23 21077566 21077495 View Pro AGG attcataggt tgttcctttt 0 0 75.92 53.85 22.07 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr15 1 45493349 45493420 View His GTG ccggtagctc ttgtggaaac 0 0 64.63 37.18 27.45 Both chr15 2 79152904 79152976 View Lys CTT ttctctaact ggtttgtttt 0 0 80.72 58.28 22.44 Both chr15 3 80036997 80037069 View Cys GCA aacagttgaa gcctgaaagt 0 0 74.95 55.70 19.25 Both chr15 4 89878304 89878376 View Arg TCG acaaccgacg aagggaggtt 0 0 76.93 58.34 18.59 Both chr15 5 92254374 92254302 View Pseudo GTA gactaaagga ttactaactg 0 0 24.21 21.13 3.08 Eufind chr15 6 76674838 76674765 View Pseudo CTT attcagaatt gttctacttt 0 0 37.12 34.34 2.78 Eufind chr15 7 66161471 66161400 View Gln CTG catgcgtggc gcattggttt 0 0 73.65 50.36 23.29 Both chr15 8 45492682 45492611 View His GTG ctagtagctc ttgtgaggac 0 0 64.63 37.18 27.45 Both chr15 9 45490875 45490804 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr15 10 40886104 40886023 View Ser GCT aacttaccgg atgtggtggc 0 0 85.34 57.77 27.57 Both chr15 11 26327452 26327381 View Glu TTC acttgtcatc tgactggacc 0 0 76.26 53.72 22.54 Both   chr16 1 3200675 3200747 View Arg CCG acagccgcag ttgccatgtt 0 0 69.88 52.79 17.09 Both chr16 2 3202901 3202973 View Arg CCT tttgttatcc aagaaaggcc 0 0 71.53 57.48 14.05 Both chr16 3 3208923 3208994 View Pro TGG ttgtcgtcct gctttttttt 0 0 76.15 54.09 22.06 Both chr16 4 3210386 3210480 View Pro AGG tcttccgctt acactttaag 3210422 3210437 43.10 36.37 6.73 Both chr16 5 3214939 3215011 View Lys CTT tattacatca gagcttttac 0 0 54.80 37.68 17.12 tRNAscan chr16 6 3222049 3222120 View Pro CGG acgcacggga tagaagtggt 0 0 76.52 54.46 22.06 Both chr16 7 3225692 3225764 View Lys CTT ttggcgtgtc attccttttt 0 0 80.47 57.81 22.66 Both chr16 8 3238094 3238165 View Pro TGG aggaagcggc ccttttcctt 0 0 76.15 54.09 22.06 Both chr16 9 3239634 3239705 View Pro AGG taaatcgtgt ggcttttggt 0 0 75.92 53.85 22.07 Both chr16 10 3241501 3241573 View Lys CTT tcccagggaa acttgttttc 0 0 74.61 58.03 16.58 Both chr16 11 3241989 3242060 View Pro AGG ctgctgctgt ctcttcttat 0 0 77.31 55.25 22.06 Both chr16 12 3243918 3243990 View Arg CCT cgtggtaact agacaacacc 0 0 59.77 42.66 17.11 Both chr16 13 3246153 3246225 View Pseudo CTT ttgcagttat catgtttcct 0 0 41.66 45.59 -3.93 Eufind chr16 14 3419813 3419884 View Gln TTG aaccttactt aaatgagagg 0 0 30.33 14.12 16.21 Eufind chr16 15 14379750 14379821 View Thr CGT tcgcaacgca gatatccaac 0 0 80.42 57.57 22.85 Both chr16 16 22308461 22308542 View Leu AAG attgcagctg gggttgctgt 0 0 69.84 50.16 19.68 Both chr16 17 57333863 57333945 View Leu CAG ctcctaggaa agcgctcttt 0 0 75.90 46.89 29.01 Both chr16 18 70822597 70822667 View Gly GCC aacagctgga atgaagtgtt 0 0 56.35 46.95 9.40 Eufind chr16 19 70823410 70823480 View Gly GCC cacatctggg gcagcagacc 0 0 81.62 61.57 20.05 Both chr16 20 71460396 71460468 View Met CAT ctaagcagag gctgttttgt 0 0 78.21 55.64 22.57 Both chr16 21 71724890 71724963 View Gln CTG cccagagaaa ctttgtttac 0 0 20.83 11.49 9.34 Eufind chr16 22 87417700 87417628 View Met CAT tcgccgagca gtctaacgtt 0 0 74.51 54.15 20.36 Both chr16 23 73512288 73512216 View Lys TTT cagggaagaa tgtcatatgg 0 0 84.43 63.07 21.36 Both chr16 24 70813012 70812942 View Gly GCC ctcagctgga gcagctgaaa 0 0 81.62 61.57 20.05 Both chr16 25 70812184 70812114 View Gly GCC accagctgga gcctatctac 0 0 73.97 55.63 18.34 Both chr16 26 57334474 57334392 View Leu CAG actgcaagca gagctcaatt 0 0 75.90 46.89 29.01 Both chr16 27 22207113 22207032 View Leu TAG acgatcggga cacctcagaa 0 0 68.14 45.54 22.60 Both chr16 28 3234204 3234133 View Pro TGG gggaagcggc ccttttcctt 0 0 76.15 54.09 22.06 Both chr16 29 3232706 3232635 View Pro AGG cggggcgtgt ggtttttggt 0 0 75.92 53.85 22.07 Both chr16 30 3230627 3230555 View Lys CTT ctataaggaa tgccttttgc 0 0 64.91 43.81 21.10 Both chr16 31 3221031 3220961 View Pseudo TGG ccgccaccga agcctgccgt 0 0 37.53 38.51 -0.98 Eufind chr16 32 3207478 3207406 View Lys CTT cctcatagcc tgagattttg 0 0 76.19 53.54 22.65 Both chr16 33 3202680 3202609 View Pseudo AGG tttttggctc tcgtctccac 0 0 23.16 30.71 -7.55 Eufind chr16 34 686806 686736 View Gly CCC gtcttagaca cttagttttt 0 0 76.98 51.05 25.93 Both   chr17 1 7524457 7524525 View Pseudo ??? atttgcaata aatgtattat 0 0 24.54 -1.19 25.73 Eufind chr17 2 8022473 8022545 View Lys TTT ctcgtgaaga gcatgtcttt 0 0 83.80 62.78 21.02 Both chr17 3 8023070 8023141 View Gln CTG ccacgaggga tgaagctttt 0 0 73.65 50.36 23.29 Both chr17 4 8024243 8024330 View Arg TCT ttcgtcgggt attttatttc 8024280 8024294 71.27 50.82 20.45 Both chr17 5 8029064 8029134 View Gly GCC tttaagccgc cgagtacagt 0 0 81.62 61.57 20.05 Both chr17 6 8089676 8089747 View Trp CCA gtggccggcc gcggctattt 0 0 74.00 52.21 21.79 Both chr17 7 8090184 8090265 View Ser GCT gctgtctgca gctaaggaag 0 0 85.34 57.77 27.57 Both chr17 8 8090478 8090551 View Thr AGT tctttccggc ccgtgtttcc 0 0 84.06 64.45 19.61 Both chr17 9 8090911 8090984 View Ile AAT cgtagcaact ggattgaaac 0 0 80.66 62.17 18.49 Both chr17 10 8124866 8124937 View Gly TCC tagcaccgga agtcgttttg 0 0 71.94 51.51 20.43 Both chr17 11 15408685 15408758 View Sup CTA accagtctca tttccttcct 0 0 28.00 18.87 9.13 Eufind chr17 12 19411494 19411565 View Trp CCA actttggtgt aggttgggtt 0 0 74.80 53.00 21.80 Both chr17 13 19764175 19764245 View Gly CCC ttagttaaaa gctcccacct 0 0 70.13 54.55 15.58 Both chr17 14 29877093 29877164 View Thr CGT tgggctgtca gagacccgag 0 0 79.77 59.88 19.89 Both chr17 15 37023898 37023969 View Cys GCA caccgccaga cgggtttctt 0 0 77.71 58.47 19.24 Both chr17 16 47269890 47269961 View Gln TTG gaagccagca cacgagactt 0 0 73.77 50.83 22.94 Both chr17 17 58863593 58863663 View Sup TTA gtatgaggga tgtccttcgg 0 0 57.62 48.12 9.50 Eufind chr17 18 73030001 73030073 View Arg CCT cgtgccccaa gaggtgaaag 0 0 73.88 56.31 17.57 Both chr17 19 73031208 73031280 View Arg TCG tgcagccgga gaacgtttta 0 0 70.52 51.50 19.02 Both chr17 20 80452668 80452597 View Met CAT ccttatagcc tagactccct 0 0 68.98 40.96 28.02 Both chr17 21 73030598 73030526 View Arg CCT gtcttaccgc tcgagagggg 0 0 73.41 55.84 17.57 Both chr17 22 66391031 66390957 View Undet ??? tcctacaaga catatctagc 0 0 35.05 26.11 8.94 Eufind chr17 23 66016085 66016013 View Arg CCG atcctgtggt cgtgagatta 0 0 65.49 49.24 16.25 Both chr17 24 62526991 62526918 View Thr AGT cacaacgggc caaccgagca 0 0 43.90 28.27 15.63 Eufind chr17 25 38273626 38273553 View SeC TCA tagagtagga taacgtttgg 0 0 47.88 0.00 0.00 tRNAscan chr17 26 37310815 37310744 View Cys GCA gtggcgtggc ctgtgctccg 0 0 77.71 58.47 19.24 Both chr17 27 37310058 37309987 View Cys GCA tgccggcaga ctttggcctt 0 0 77.71 58.47 19.24 Both chr17 28 37025616 37025545 View Cys GCA gtagaggcgc caatggcttg 0 0 77.18 59.26 17.92 Both chr17 29 37018008 37017937 View Cys GCA ttttggtaga cacagccacc 0 0 70.63 51.39 19.24 Both chr17 30 36990046 36989975 View Cys GCA tacaggtaga tctgtggtgt 0 0 51.58 38.77 12.81 Eufind chr17 31 36908107 36908034 View Asn GTT agtcgactcg ctatgacctt 0 0 82.24 58.97 23.27 Both chr17 32 22028247 22028179 View Pseudo TGA atatcttgtt tctaggtttt 0 0 23.94 1.37 22.57 Eufind chr17 33 19506658 19506587 View Pseudo TTG gaccttactt aaataagagg 0 0 22.33 4.15 18.18 Both chr17 34 8130382 8130309 View Ile AAT gaaagttagt gtgggtggct 0 0 80.89 62.41 18.48 Both chr17 35 8130009 8129928 View Ser AGA cctaagcctc tcatattttt 0 0 88.01 56.90 31.11 Both chr17 36 8129626 8129553 View Thr AGT tggcagcttc ttattcaatt 0 0 84.06 64.45 19.61 Both chr17 37 8126222 8126151 View Pro CGG tccgcacgtc tcctttacct 0 0 76.52 54.46 22.06 Both chr17 38 8125627 8125556 View Asp GTC tacaggtccc agtactagca 0 0 72.92 48.38 24.54 Both chr17 39 8124258 8124187 View Trp CCA ctgttggaca aacaaaacat 0 0 74.81 54.94 19.87 Both chr17 40 8042843 8042770 View Thr AGT gttttacgcc gagttagcgg 0 0 81.60 62.00 19.60 Both chr17 41 8042280 8042199 View Ser CGA agcgcacgcg tcactagttt 0 0 92.09 62.91 29.18 Both chr17 42 8023713 8023632 View Leu TAG ttttcgtgca ggctggagtt 0 0 72.19 50.81 21.38 Both   chr18 1 43299751 43299822 View Glu CTC gaggatgatg gcctttcttc 0 0 32.13 24.98 7.15 Eufind chr18 2 55345854 55345925 View Pseudo TCC aaagagtgtg gcaggctgac 0 0 33.06 39.10 -6.04 Eufind chr18 3 55346177 55346248 View Pseudo TCC aaagagtgtg gcaggctgac 0 0 32.27 36.95 -4.68 Eufind chr18 4 43669343 43669271 View Lys CTT catcaggtgg ccagatgaag 0 0 60.42 45.64 14.78 Eufind   chr19 1 1383562 1383635 View Asn GTT gcgcagtgtc cgtggtgact 0 0 82.24 58.97 23.27 Both chr19 2 4724082 4724153 View Gly TCC acctatcagg tgcggtacca 0 0 76.83 56.40 20.43 Both chr19 3 19852207 19852277 View Lys TTT cttatactcc ccagtgccac 0 0 28.27 22.19 6.08 Eufind chr19 4 33667963 33668036 View Thr AGT ctgtacgggt caaccgagcg 0 0 84.06 64.45 19.61 Both chr19 5 36066750 36066822 View Lys CTT tgggcaagaa ccagatgaag 0 0 52.67 35.34 17.33 tRNAscan chr19 6 52425468 52425396 View Lys CTT ctgttgcatt ccagatgaag 0 0 51.97 35.71 16.26 Eufind chr19 7 50038005 50037933 View Lys TTT cctgaaggga cgttcagtgg 0 0 48.15 42.78 5.37 Both chr19 8 45981945 45981860 View SeC(e) TCA aggttgtcct ggtagtaact 0 0 75.99 0.00 0.00 Eufind chr19 9 41748214 41748142 View Pseudo TTT aaaagagagt tttgcagttt 0 0 53.63 52.32 1.31 Both chr19 10 39902900 39902808 View Ile TAT tgcggccgga ctttttttcc 39902862 39902844 68.39 40.19 28.20 Both chr19 11 36111530 36111460 View Pseudo ??? gaaagtcgac tttgggcaac 0 0 20.12 9.50 10.62 Eufind chr19 12 9150428 9150356 View Pseudo TTG aacagcattc ctaatcagct 0 0 23.15 23.38 -0.23 Eufind chr19 13 4724719 4724647 View Val CAC acgcctaccg ggtcagctgt 0 0 84.20 59.01 25.19 Both chr19 14 1383433 1383361 View Phe GAA ctgccgccca gaagttttag 0 0 84.19 62.58 21.61 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr20 1 17855142 17855219 View Gln CTG gcagccctca gctggctgtg 0 0 21.25 13.07 8.18 Eufind chr20 2 30088703 30088774 View Pseudo AGA aaacttatca tttgctgtct 0 0 20.36 18.08 2.28 Eufind chr20 3 43951001 43951073 View Pseudo CAC cccatgcctg cgagattttc 0 0 29.18 32.04 -2.86 Eufind chr20 4 55933502 55933428 View Pseudo TAA aacagggttt acatgcctgt 0 0 25.92 -2.01 27.93 Both chr20 5 51218415 51218338 View Pseudo AAT tgccatgtgt aaacttgata 0 0 23.04 21.47 1.57 Eufind chr20 6 48952423 48952342 View Leu AAG tttccacgga acttactggc 0 0 40.72 34.21 6.51 Eufind chr20 7 13970541 13970470 View Pseudo CTC atgtatttgg aaggaaaaaa 0 0 27.08 35.45 -8.37 Eufind   chr21 1 15926516 15926586 View Sup TTA gttttggaaa tttacctggg 0 0 22.35 13.61 8.74 Eufind chr21 2 18827177 18827107 View Gly GCC ttctatcggt gcacgaaaat 0 0 82.15 62.58 19.57 Both   chr22 1 44546537 44546622 View SeC(e) TCA ggcaccaaaa cccggcgcag 0 0 62.60 0.00 0.00 Eufind   chrX 1 55206666 55206737 View Pseudo TTG gaccttactc aaataagagg 0 0 34.66 7.45 27.21 Eufind chrX 2 55207829 55207755 View Leu TAA aacagggttt atatacctat 0 0 28.07 14.24 13.83 Eufind chrX 3 51306183 51306112 View Pseudo CTC taagcttctc tgagtccttt 0 0 20.35 25.90 -5.55 Eufind chrX 4 18693101 18693029 View Val TAC tcctcgtaga tagccgtaag 0 0 85.12 60.08 25.04 Both chrX 5 3833344 3833271 View Ile GAT gccgtcgggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX 6 3794915 3794842 View Ile GAT gccgtcgggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX 7 3756491 3756418 View Ile GAT gccgtcaggc cggcgttagc 0 0 72.42 44.43 27.99 Both   chrY 1 8240214 8240140 View Pseudo TTG ctgaccttaa ataagaggat 0 0 27.14 2.00 25.14 Eufind

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.