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tRNAscan-SE Analysis of Homo sapiens (Hg18 Mar 2006)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr10 1 22892585 22892657 View Pseudo GGG acatttacaa cttcctaact 0 0 34.81 33.93 0.88 Eufind chr10 2 69194267 69194348 View Ser TGA tattctcgtg gaagcgggtg 0 0 90.86 62.33 28.53 Both chr10 3 34631489 34631422 View Pseudo CAA tgagcagcag tcaccagcct 0 0 20.90 7.97 12.93 Eufind chr10 4 22558517 22558444 View Asn GTT tgacaccgaa cgctctcctt 0 0 82.24 58.97 23.27 Both chr10 5 20076688 20076614 View Pseudo CTG tgaccttgct aattatttca 0 0 26.31 -2.56 28.87 Eufind chr10 6 5935752 5935680 View Val TAC gctagcctgt tggtgtggtc 0 0 81.67 56.63 25.04 Both   chr11 1 9253366 9253439 View Leu CAA tcttttagct aggtcacctt 0 0 60.99 46.07 14.92 Both chr11 2 51216476 51216548 View Lys CTT aaggtagaga ccagatatca 0 0 40.00 31.47 8.53 Eufind chr11 3 59075343 59075428 View Arg TCT gcacgtgtct ctttttgttt 59075380 59075392 71.13 50.68 20.45 Both chr11 4 59075804 59075886 View Leu TAA tttatcagtt aagaggagtt 0 0 79.52 46.13 33.39 Both chr11 5 59080478 59080550 View Lys TTT ttcttcaggg gatgctgttt 0 0 82.14 63.54 18.60 Both chr11 6 60520084 60520153 View Pseudo TGC attccaaccc ttttctagcc 0 0 20.74 21.12 -0.38 Eufind chr11 7 63418343 63418411 View Pseudo CCT gttcagtggg gtccttccat 0 0 21.47 23.84 -2.37 Eufind chr11 8 65872167 65872248 View Ser GCT tgtcacgtag gccctgtttt 0 0 85.83 58.25 27.58 Both chr11 9 75624205 75624276 View Pro AGG tacgagcgac tcattttctt 0 0 75.92 53.85 22.07 Both chr11 10 108541249 108541330 View Ser AGA atggtctcag agatgttttc 0 0 29.13 20.68 8.45 Eufind chr11 11 121935865 121935937 View Lys TTT gtaatgggta atggcgtttg 0 0 83.96 62.60 21.36 Both chr11 12 75624588 75624517 View Pro TGG ctcagcagat ctcttttctt 0 0 76.24 54.23 22.01 Both chr11 13 59090501 59090429 View Phe GAA ttccacggca gcgcttccgt 0 0 82.45 60.84 21.61 Both chr11 14 59084456 59084384 View Lys TTT actaccgtga gtatcttttt 0 0 83.80 62.78 21.02 Both chr11 15 59081618 59081546 View Phe GAA tcatgtcttc gaccttttgt 0 0 84.19 62.58 21.61 Both chr11 16 59075108 59075036 View Val TAC ttccgcacgc cggcgtgatt 0 0 82.67 57.63 25.04 Both chr11 17 59074750 59074678 View Val TAC agtcgtgtgg tgagatgtta 0 0 85.12 60.08 25.04 Both chr11 18 50190526 50190455 View Ala TGC cttttaggaa agtgatggtt 0 0 51.06 32.62 18.44 Both chr11 19 45246849 45246776 View Trp CCA tcccaggaag cttattaacc 0 0 21.17 15.98 5.19 Eufind   chr12 1 27734573 27734645 View Lys TTT aagagaatgc ttccctctta 0 0 49.92 36.16 13.76 Eufind chr12 2 54870415 54870496 View Ser CGA ggttttggaa ggtttttttt 0 0 89.14 63.50 25.64 Both chr12 3 73137449 73137521 View Gln CTG cctctccggt ttacctgaag 0 0 34.73 23.16 11.57 Eufind chr12 4 94953930 94954001 View Asp GTC ttcgtgcggt gcacagtaat 0 0 72.92 48.38 24.54 Both chr12 5 97421412 97421483 View Asp GTC gcctaacgac gtgtgtagct 0 0 74.76 50.21 24.55 Both chr12 6 97422161 97422232 View Trp CCA agcccagcag aacttttttt 0 0 71.65 49.85 21.80 Both chr12 7 121426877 121426947 View Asp GTC atttacaagt ccatataata 0 0 32.33 19.08 13.25 Both chr12 8 123990465 123990536 View Ala TGC acaaggggta gacttttccg 0 0 73.41 49.83 23.58 Both chr12 9 128282151 128282225 View Pseudo AAT aaagcagctg gggtttgttg 0 0 27.18 26.26 0.92 Eufind chr12 10 123990217 123990146 View Asp GTC gtacggcttg gccgggtact 0 0 72.92 48.38 24.54 Both chr12 11 123978414 123978342 View Phe GAA cgtaacggct cttcctcttt 0 0 84.19 62.58 21.61 Both chr12 12 123977915 123977844 View Asp GTC ttatgggcgg gccaagtacg 0 0 72.92 48.38 24.54 Both chr12 13 123972325 123972254 View Ala TGC ggaaagggag ttgtagtttt 0 0 74.45 50.86 23.59 Both chr12 14 112871000 112870928 View Pseudo CTC ggcctccggg cgactccaca 0 0 22.05 31.42 -9.37 Eufind chr12 15 96014895 96014822 View Pseudo TTG tactgtgaga ctatttgacc 0 0 22.16 27.13 -4.97 Eufind chr12 16 48497531 48497457 View Pseudo TTG ctggctttac ataagaggat 0 0 29.85 -4.50 34.35 Eufind   chr13 1 93999977 93999905 View Phe GAA cccagaacgt gctactttta 0 0 84.19 62.58 21.61 Both chr13 2 57356622 57356551 View Pseudo CTC tttacgaagt accaaaataa 0 0 34.44 33.04 1.40 Eufind chr13 3 44390133 44390062 View Glu TTC tattgccgtc cgccgaaatt 0 0 76.26 53.72 22.54 Both chr13 4 40928132 40928061 View Glu CTC gttctaagtt caaagaaatg 0 0 41.44 31.63 9.81 Eufind chr13 5 40532945 40532874 View Glu TTC tcatagcact cgcttcctta 0 0 76.46 53.14 23.32 Both chr13 6 35537818 35537747 View Pseudo TTG gaccttattt agataagagg 0 0 23.74 0.15 23.59 Eufind chr13 7 30146174 30146101 View Asn GTT gagtaactgg gtcagtgctt 0 0 82.24 58.97 23.27 Both   chr14 1 20148131 20148212 View Leu AAG ttagccagta ggtgcttccc 0 0 69.84 50.16 19.68 Both chr14 2 20163369 20163450 View Leu TAG taacgtgtgt gtggtacgtt 0 0 68.82 48.37 20.45 Both chr14 3 20171005 20171076 View Pro TGG ctccagttct ctttactttc 0 0 79.61 57.55 22.06 Both chr14 4 20219689 20219761 View Thr TGT ttctgcgtga tgcgaaacta 0 0 78.79 56.36 22.43 Both chr14 5 20221272 20221360 View Tyr GTA ttccgtgctt gacgctgctg 20221309 20221324 75.42 49.01 26.41 Both chr14 6 20222015 20222086 View Pro TGG cagctacagt tcgtggctac 0 0 76.15 54.09 22.06 Both chr14 7 22468750 22468822 View Arg ACG tgccatctca gtggggttcc 0 0 72.37 52.49 19.88 Both chr14 8 72499432 72499503 View Cys GCA gataggtgaa tcccggatgt 0 0 74.26 55.02 19.24 Both chr14 9 88515195 88515267 View Ala AGC aggatcacat tacgttacca 0 0 59.85 39.72 20.13 Both chr14 10 101853182 101853255 View Ile AAT aacgtcaggc ggctaacttt 0 0 80.66 62.17 18.49 Both chr14 11 77770663 77770591 View Pseudo CTA ctctcatgca cttgatgcct 0 0 26.26 34.03 -7.77 Eufind chr14 12 73125354 73125282 View Pseudo TTT aaagtaaaca ttttttttta 0 0 38.73 35.90 2.83 Eufind chr14 13 57776438 57776366 View Lys CTT cgtaacaggc cgggttgtaa 0 0 80.72 58.28 22.44 Both chr14 14 31306637 31306567 View Glu TTC aaacacatcc gcagtccctg 0 0 28.80 23.73 5.07 Eufind chr14 15 20215099 20215018 View Pseudo TAG ttagcagttt gggtcttttg 0 0 32.18 30.85 1.33 Both chr14 16 20201284 20201191 View Tyr GTA cagcgtgcac agtgcccgat 20201247 20201227 74.71 48.30 26.41 Both chr14 17 20198050 20197957 View Tyr GTA cagtgtgcat agcgcctgac 20198013 20197993 71.83 45.42 26.41 Both chr14 18 20195556 20195463 View Tyr GTA tagcatgcat agtgcgtgat 20195519 20195499 75.82 48.15 27.67 Both chr14 19 20191191 20191098 View Tyr GTA aaacgtgcgc gctgccgtat 20191154 20191134 74.71 48.30 26.41 Both chr14 20 20169231 20169159 View Thr TGT tctctgtggc cggctgtagg 0 0 79.46 56.92 22.54 Both chr14 21 20151861 20151789 View Thr TGT agcagacgag gtgtgttttt 0 0 80.94 58.40 22.54 Both chr14 22 20151471 20151400 View Pro AGG tctgtatcgc tcgctctttt 0 0 75.92 53.85 22.07 Both chr14 23 20147406 20147335 View Pro AGG attcataggt tgttcctttt 0 0 75.92 53.85 22.07 Both   chr15 1 43280641 43280712 View His GTG ccggtagctc ttgtggaaac 0 0 64.63 37.18 27.45 Both chr15 2 76939959 76940031 View Lys CTT ttctctaact ggtttgtttt 0 0 80.72 58.28 22.44 Both chr15 3 77824052 77824124 View Cys GCA aacagttgaa gcctgaaagt 0 0 74.95 55.70 19.25 Both chr15 4 87679308 87679380 View Arg TCG acaaccgacg aagggaggtt 0 0 76.93 58.34 18.59 Both chr15 5 90055378 90055306 View Pseudo GTA gactaaagga ttactaactg 0 0 24.21 21.13 3.08 Eufind chr15 6 74461893 74461820 View Pseudo CTT attcagaatt gttctacttt 0 0 37.12 34.34 2.78 Eufind chr15 7 63948525 63948454 View Gln CTG catgcgtggc gcattggttt 0 0 73.65 50.36 23.29 Both chr15 8 43279974 43279903 View His GTG ctagtagctc ttgtgaggac 0 0 64.63 37.18 27.45 Both chr15 9 43278167 43278096 View His GTG ccggtagctc ttgtgggaac 0 0 64.63 37.18 27.45 Both chr15 10 38673396 38673315 View Ser GCT aacttaccgg atgtggtggc 0 0 85.34 57.77 27.57 Both chr15 11 23878545 23878474 View Glu TTC acttgtcatc tgactggacc 0 0 76.26 53.72 22.54 Both   chr16 1 3140676 3140748 View Arg CCG acagccgcag ttgccatgtt 0 0 69.88 52.79 17.09 Both chr16 2 3142902 3142974 View Arg CCT tttgttatcc aagaaaggcc 0 0 71.53 57.48 14.05 Both chr16 3 3148924 3148995 View Pro TGG ttgtcgtcct gctttttttt 0 0 76.15 54.09 22.06 Both chr16 4 3150387 3150481 View Pro AGG tcttccgctt acactttaag 3150423 3150438 43.10 36.37 6.73 Both chr16 5 3154940 3155012 View Lys CTT tattacatca gagcttttac 0 0 54.80 37.68 17.12 tRNAscan chr16 6 3162050 3162121 View Pro CGG acgcacggga tagaagtggt 0 0 76.52 54.46 22.06 Both chr16 7 3165693 3165765 View Lys CTT ttggcgtgtc attccttttt 0 0 80.47 57.81 22.66 Both chr16 8 3178095 3178166 View Pro TGG aggaagcggc ccttttcctt 0 0 76.15 54.09 22.06 Both chr16 9 3179635 3179706 View Pro AGG taaatcgtgt ggcttttggt 0 0 75.92 53.85 22.07 Both chr16 10 3181502 3181574 View Lys CTT tcccagggaa acttgttttc 0 0 74.61 58.03 16.58 Both chr16 11 3181990 3182061 View Pro AGG ctgctgctgt ctcttcttat 0 0 77.31 55.25 22.06 Both chr16 12 3183919 3183991 View Arg CCT cgtggtaact agacaacacc 0 0 59.77 42.66 17.11 Both chr16 13 3186154 3186226 View Pseudo CTT ttgcagttat catgtttcct 0 0 41.66 45.59 -3.93 Eufind chr16 14 3359814 3359885 View Gln TTG aaccttactt aaatgagagg 0 0 30.33 14.12 16.21 Eufind chr16 15 14287251 14287322 View Thr CGT tcgcaacgca gatatccaac 0 0 80.42 57.57 22.85 Both chr16 16 22215962 22216043 View Leu AAG attgcagctg gggttgctgt 0 0 69.84 50.16 19.68 Both chr16 17 55891364 55891446 View Leu CAG ctcctaggaa agcgctcttt 0 0 75.90 46.89 29.01 Both chr16 18 69380098 69380168 View Gly GCC aacagctgga atgaagtgtt 0 0 56.35 46.95 9.40 Eufind chr16 19 69380911 69380981 View Gly GCC cacatctggg gcagcagacc 0 0 81.62 61.57 20.05 Both chr16 20 70017897 70017969 View Met CAT ctaagcagag gctgttttgt 0 0 78.21 55.64 22.57 Both chr16 21 70282391 70282464 View Gln CTG cccagagaaa ctttgtttac 0 0 20.83 11.49 9.34 Eufind chr16 22 85975201 85975129 View Met CAT tcgccgagca gtctaacgtt 0 0 74.51 54.15 20.36 Both chr16 23 72069789 72069717 View Lys TTT cagggaagaa tgtcatatgg 0 0 84.43 63.07 21.36 Both chr16 24 69370513 69370443 View Gly GCC ctcagctgga gcagctgaaa 0 0 81.62 61.57 20.05 Both chr16 25 69369685 69369615 View Gly GCC accagctgga gcctatctac 0 0 73.97 55.63 18.34 Both chr16 26 55891975 55891893 View Leu CAG actgcaagca gagctcaatt 0 0 75.90 46.89 29.01 Both chr16 27 22114614 22114533 View Leu TAG acgatcggga cacctcagaa 0 0 68.14 45.54 22.60 Both chr16 28 3174205 3174134 View Pro TGG gggaagcggc ccttttcctt 0 0 76.15 54.09 22.06 Both chr16 29 3172707 3172636 View Pro AGG cggggcgtgt ggtttttggt 0 0 75.92 53.85 22.07 Both chr16 30 3170628 3170556 View Lys CTT ctataaggaa tgccttttgc 0 0 64.91 43.81 21.10 Both chr16 31 3161032 3160962 View Pseudo TGG ccgccaccga agcctgccgt 0 0 37.53 38.51 -0.98 Eufind chr16 32 3147479 3147407 View Lys CTT cctcatagcc tgagattttg 0 0 76.19 53.54 22.65 Both chr16 33 3142681 3142610 View Pseudo AGG tttttggctc tcgtctccac 0 0 23.16 30.71 -7.55 Eufind chr16 34 626807 626737 View Gly CCC gtcttagaca cttagttttt 0 0 76.98 51.05 25.93 Both   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr17 1 7465182 7465250 View Pseudo ??? atttgcaata aatgtattat 0 0 24.54 -1.19 25.73 Eufind chr17 2 7963198 7963270 View Lys TTT ctcgtgaaga gcatgtcttt 0 0 83.80 62.78 21.02 Both chr17 3 7963795 7963866 View Gln CTG ccacgaggga tgaagctttt 0 0 73.65 50.36 23.29 Both chr17 4 7964968 7965055 View Arg TCT ttcgtcgggt attttatttc 7965005 7965019 71.27 50.82 20.45 Both chr17 5 7969789 7969859 View Gly GCC tttaagccgc cgagtacagt 0 0 81.62 61.57 20.05 Both chr17 6 8030401 8030472 View Trp CCA gtggccggcc gcggctattt 0 0 74.00 52.21 21.79 Both chr17 7 8030909 8030990 View Ser GCT gctgtctgca gctaaggaag 0 0 85.34 57.77 27.57 Both chr17 8 8031203 8031276 View Thr AGT tctttccggc ccgtgtttcc 0 0 84.06 64.45 19.61 Both chr17 9 8031636 8031709 View Ile AAT cgtagcaact ggattgaaac 0 0 80.66 62.17 18.49 Both chr17 10 8065591 8065662 View Gly TCC tagcaccgga agtcgttttg 0 0 71.94 51.51 20.43 Both chr17 11 15349410 15349483 View Sup CTA accagtctca tttccttcct 0 0 28.00 18.87 9.13 Eufind chr17 12 19352086 19352157 View Trp CCA actttggtgt aggttgggtt 0 0 74.80 53.00 21.80 Both chr17 13 19704767 19704837 View Gly CCC ttagttaaaa gctcccacct 0 0 70.13 54.55 15.58 Both chr17 14 26901213 26901284 View Thr CGT tgggctgtca gagacccgag 0 0 79.77 59.88 19.89 Both chr17 15 34277424 34277495 View Cys GCA caccgccaga cgggtttctt 0 0 77.71 58.47 19.24 Both chr17 16 44624889 44624960 View Gln TTG gaagccagca cacgagactt 0 0 73.77 50.83 22.94 Both chr17 17 56218375 56218445 View Sup TTA gtatgaggga tgtccttcgg 0 0 57.62 48.12 9.50 Eufind chr17 18 70541596 70541668 View Arg CCT cgtgccccaa gaggtgaaag 0 0 73.88 56.31 17.57 Both chr17 19 70542803 70542875 View Arg TCG tgcagccgga gaacgtttta 0 0 70.52 51.50 19.02 Both chr17 20 78045957 78045886 View Met CAT ccttatagcc tagactccct 0 0 68.98 40.96 28.02 Both chr17 21 70542193 70542121 View Arg CCT gtcttaccgc tcgagagggg 0 0 73.41 55.84 17.57 Both chr17 22 63902626 63902552 View Undet ??? tcctacaaga catatctagc 0 0 35.05 26.11 8.94 Eufind chr17 23 63446547 63446475 View Arg CCG atcctgtggt cgtgagatta 0 0 65.49 49.24 16.25 Both chr17 24 59957453 59957380 View Thr AGT cacaacgggc caaccgagca 0 0 43.90 28.27 15.63 Eufind chr17 25 35527152 35527079 View SeC TCA tagagtagga taacgtttgg 0 0 47.88 0.00 0.00 tRNAscan chr17 26 34564341 34564270 View Cys GCA gtggcgtggc ctgtgctccg 0 0 77.71 58.47 19.24 Both chr17 27 34563584 34563513 View Cys GCA tgccggcaga ctttggcctt 0 0 77.71 58.47 19.24 Both chr17 28 34279142 34279071 View Cys GCA gtagaggcgc caatggcttg 0 0 77.18 59.26 17.92 Both chr17 29 34271534 34271463 View Cys GCA ttttggtaga cacagccacc 0 0 70.63 51.39 19.24 Both chr17 30 34243572 34243501 View Cys GCA tacaggtaga tctgtggtgt 0 0 51.58 38.77 12.81 Eufind chr17 31 34161633 34161560 View Asn GTT agtcgactcg ctatgacctt 0 0 82.24 58.97 23.27 Both chr17 32 21952374 21952306 View Pseudo TGA atatcttgtt tctaggtttt 0 0 23.94 1.37 22.57 Eufind chr17 33 19447250 19447179 View Pseudo TTG gaccttactt aaataagagg 0 0 22.33 4.15 18.18 Both chr17 34 8071107 8071034 View Ile AAT gaaagttagt gtgggtggct 0 0 80.89 62.41 18.48 Both chr17 35 8070734 8070653 View Ser AGA cctaagcctc tcatattttt 0 0 88.01 56.90 31.11 Both chr17 36 8070351 8070278 View Thr AGT tggcagcttc ttattcaatt 0 0 84.06 64.45 19.61 Both chr17 37 8066947 8066876 View Pro CGG tccgcacgtc tcctttacct 0 0 76.52 54.46 22.06 Both chr17 38 8066352 8066281 View Asp GTC tacaggtccc agtactagca 0 0 72.92 48.38 24.54 Both chr17 39 8064983 8064912 View Trp CCA ctgttggaca aacaaaacat 0 0 74.81 54.94 19.87 Both chr17 40 7983568 7983495 View Thr AGT gttttacgcc gagttagcgg 0 0 81.60 62.00 19.60 Both chr17 41 7983005 7982924 View Ser CGA agcgcacgcg tcactagttt 0 0 92.09 62.91 29.18 Both chr17 42 7964438 7964357 View Leu TAG ttttcgtgca ggctggagtt 0 0 72.19 50.81 21.38 Both   chr17_random 1 1739927 1739999 View Arg CCG atcctgtggt cgtgagatta 0 0 65.49 49.24 16.25 Both   chr18 1 41553749 41553820 View Glu CTC gaggatgatg gcctttcttc 0 0 32.13 24.98 7.15 Eufind chr18 2 53496852 53496923 View Pseudo TCC aaagagtgtg gcaggctgac 0 0 33.06 39.10 -6.04 Eufind chr18 3 53497175 53497246 View Pseudo TCC aaagagtgtg gcaggctgac 0 0 32.27 36.95 -4.68 Eufind chr18 4 41923341 41923269 View Lys CTT catcaggtgg ccagatgaag 0 0 60.42 45.64 14.78 Eufind   chr19 1 1334562 1334635 View Asn GTT gcgcagtgtc cgtggtgact 0 0 82.24 58.97 23.27 Both chr19 2 4675082 4675153 View Gly TCC acctatcagg tgcggtacca 0 0 76.83 56.40 20.43 Both chr19 3 19713207 19713277 View Lys TTT cttatactcc ccagtgccac 0 0 28.27 22.19 6.08 Eufind chr19 4 38359803 38359876 View Thr AGT ctgtacgggt caaccgagcg 0 0 84.06 64.45 19.61 Both chr19 5 40758590 40758662 View Lys CTT tgggcaagaa ccagatgaag 0 0 52.67 35.34 17.33 tRNAscan chr19 6 57117280 57117208 View Lys CTT ctgttgcatt ccagatgaag 0 0 51.97 35.71 16.26 Eufind chr19 7 54729817 54729745 View Lys TTT cctgaaggga cgttcagtgg 0 0 48.15 42.78 5.37 Both chr19 8 50673785 50673700 View SeC(e) TCA aggttgtcct ggtagtaact 0 0 75.99 0.00 0.00 Eufind chr19 9 46440054 46439982 View Pseudo TTT aaaagagagt tttgcagttt 0 0 53.63 52.32 1.31 Both chr19 10 44594740 44594648 View Ile TAT tgcggccgga ctttttttcc 44594702 44594684 68.39 40.19 28.20 Both chr19 11 40803370 40803300 View Pseudo ??? gaaagtcgac tttgggcaac 0 0 20.12 9.50 10.62 Eufind chr19 12 9011428 9011356 View Pseudo TTG aacagcattc ctaatcagct 0 0 23.15 23.38 -0.23 Eufind chr19 13 4675719 4675647 View Val CAC acgcctaccg ggtcagctgt 0 0 84.20 59.01 25.19 Both chr19 14 1334433 1334361 View Phe GAA ctgccgccca gaagttttag 0 0 84.19 62.58 21.61 Both   chr1 1 16924648 16924720 View Pseudo CAC tgtatgtgca tggttttttg 0 0 30.83 28.30 2.53 Eufind chr1 2 16926367 16926437 View Gly CCC gtgtgtagag gcaggtactt 0 0 63.06 56.17 6.89 Eufind chr1 3 17059280 17059352 View Pseudo CAC tgtatatgca tcgtgttttg 0 0 41.96 41.19 0.77 Both chr1 4 17061003 17061073 View Gly CCC ttacgcagag aaagggtctt 0 0 78.31 58.27 20.04 Both chr1 5 17071665 17071736 View Glu TTC ctcctgtgtg ttgttttaca 0 0 75.96 49.95 26.01 Both chr1 6 17074545 17074618 View Asn GTT gattgaggtt tgattttaaa 0 0 56.35 47.55 8.80 Eufind chr1 7 17088759 17088832 View Asn GTT ggaagcgctt cttattggaa 0 0 80.35 57.09 23.26 Both chr1 8 39742782 39742854 View Pseudo CTT cagtattgcc tcagatgaag 0 0 46.90 49.65 -2.75 Eufind chr1 9 94085717 94085801 View Arg TCT tccaacaggt taacgctttt 94085754 94085765 71.18 52.88 18.30 Both chr1 10 142481551 142481624 View Asn GTT agccattgga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 11 143012968 143013041 View Asn GTT agcagtgctt cttattggaa 0 0 60.57 47.82 12.75 Both chr1 12 143193197 143193270 View Asn GTT agcagtgctt cttattggaa 0 0 53.66 40.91 12.75 Both chr1 13 144097086 144097161 View Asn GTT aaccattaga gtacctttta 0 0 44.21 24.87 19.34 Eufind chr1 14 144652936 144653006 View Pseudo CCT actcagtgga ggccttctta 0 0 34.62 33.59 1.03 Eufind chr1 15 144674661 144674732 View Gln CTG tgcacgatga ttctgtttaa 0 0 70.16 46.87 23.29 Both chr1 16 145011397 145011468 View His GTG cttgtggccc aagttgctcg 0 0 64.63 37.18 27.45 Both chr1 17 145016802 145016873 View Pseudo TTC ctcctgtgcc ttgttttgca 0 0 23.38 20.09 3.29 Eufind chr1 18 145949915 145949985 View Pseudo CCT actcagtgga ggccttctta 0 0 34.62 33.59 1.03 Eufind chr1 19 145971662 145971733 View Gln CTG tgcacgatga ttctgtttaa 0 0 70.16 46.87 23.29 Both chr1 20 146185653 146185726 View Asn ATT gctagtacct cctgttctag 0 0 52.07 42.81 9.26 Eufind chr1 21 146220095 146220166 View His GTG cctgtggctc atgtcgttag 0 0 64.63 37.18 27.45 Both chr1 22 146267561 146267632 View Gln CTG tgcattgtga ttctgtgtaa 0 0 56.30 36.28 20.02 Both chr1 23 146292313 146292384 View Pseudo CTG ctcaacagct tggtgtctgc 0 0 43.68 40.06 3.62 Eufind chr1 24 146344161 146344234 View Asn GTT agccattgga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 25 146467429 146467502 View Asn GTT gacagtacct cttgttcgag 0 0 72.61 55.89 16.72 Both chr1 26 146614739 146614812 View Asn GTT aacagtacct cctctttgag 0 0 82.24 58.97 23.27 Both chr1 27 147345988 147346059 View Pseudo CTG gctagtgtga ttctgtataa 0 0 39.31 36.06 3.25 Eufind chr1 28 147452749 147452820 View Gln CTG cgcattgtga ttctgtttaa 0 0 68.84 45.55 23.29 Both chr1 29 147600896 147600964 View Glu CTC gctttgtggt ctgggtctcg 0 0 21.64 14.69 6.95 Eufind chr1 30 147875233 147875306 View Asn GTT agccattaga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 31 147986426 147986494 View Glu TTC gctttgtggt ctgggtctcg 0 0 21.27 14.33 6.94 Eufind chr1 32 151910350 151910421 View Met CAT agttctagat tcggagtttt 0 0 68.98 40.96 28.02 Both chr1 33 159657285 159657357 View Pseudo ??? aagctgtctc gtttgcttct 0 0 36.03 34.73 1.30 Eufind chr1 34 159677947 159678029 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 35 159679718 159679788 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 36 159685365 159685447 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 37 159687091 159687161 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 38 159692746 159692828 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 39 159694522 159694592 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 40 159700156 159700238 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 41 159701882 159701952 View Gly GCC tgccatcggt gcacgccctc 0 0 82.15 62.58 19.57 Both chr1 42 159707537 159707619 View Leu CAG ccggcgcgcc agccgacctt 0 0 77.22 46.89 30.33 Both chr1 43 159716980 159717050 View Gly GCC tgccatcagt gcacgccctc 0 0 69.02 51.48 17.54 Both chr1 44 159759559 159759630 View Pseudo GTC gcagttgcca gtcacgggaa 0 0 27.96 25.15 2.81 Eufind chr1 45 159767527 159767598 View Gly TCC aaccgggtac agggtttttg 0 0 73.26 52.83 20.43 Both chr1 46 159768539 159768610 View Asp GTC ttcccggttg attacagttg 0 0 34.08 15.65 18.43 tRNAscan chr1 47 159776655 159776728 View Asn GTT gccaacgccc gaagtcgcat 0 0 83.66 60.39 23.27 Both chr1 48 159841212 159841283 View Asp GTC gcagttgcca gttacggaaa 0 0 30.22 23.50 6.72 Eufind chr1 49 159849132 159849203 View Glu TTC aaccggggac acgtttttgt 0 0 54.07 47.64 6.43 Eufind chr1 50 159858089 159858162 View Asn GTT gccaacgccc gaagtcccac 0 0 49.69 39.16 10.53 Eufind chr1 51 163832774 163832846 View Pseudo CTT aaaacggggt ctgtgtttcc 0 0 42.42 38.86 3.56 Eufind chr1 52 165950586 165950657 View Pro CGG tgccgagagc aggcttttac 0 0 76.52 54.46 22.06 Both chr1 53 176944661 176944733 View Pseudo ??? ttgtttagga ctttctcttt 0 0 21.44 27.58 -6.14 Eufind chr1 54 202742278 202742350 View Lys TTT cttcgggagc tttgtagttt 0 0 83.80 62.78 21.02 Both chr1 55 203709894 203709966 View Lys TTT aggcaggtga tcctattttg 0 0 62.89 51.95 10.94 Eufind chr1 56 220704970 220705042 View Thr TGT gcctcacgtg cctgttggct 0 0 83.03 60.49 22.54 Both chr1 57 236172485 236172556 View Pseudo TGG gaccttactt aactaagagg 0 0 33.27 5.98 27.29 Both chr1 58 247134677 247134782 View Leu CAA gcttccgagt cattcgtttt 247134715 247134736 65.69 45.28 20.41 Both chr1 59 247135070 247135141 View Glu CTC catcatgtct gtaagccgtt 0 0 71.50 52.78 18.72 Both chr1 60 236173653 236173579 View Pseudo TAA aacagggttt atatgcctat 0 0 29.87 1.94 27.93 Both chr1 61 205244853 205244777 View Pseudo TGG tccccatcag cttataacct 0 0 23.61 27.10 -3.49 Eufind chr1 62 202742853 202742781 View Lys TTT gtctacggga tcttgttctc 0 0 83.80 62.78 21.02 Both chr1 63 178450971 178450899 View Val AAC atgagagggt agcagttatt 0 0 48.28 36.25 12.03 Eufind chr1 64 170424230 170424162 View Glu TTC gaaatctcca gccagtccca 0 0 26.19 14.75 11.44 Eufind chr1 65 165951420 165951349 View Pro AGG agtttgtgtc tgttttggag 0 0 75.92 53.85 22.07 Both chr1 66 159848443 159848360 View Leu CAA caaaacgtgt acgtatgttt 0 0 59.01 37.45 21.56 Both chr1 67 159766838 159766756 View Leu CAG taaaacatgt atatgtgttt 0 0 77.22 46.89 30.33 Both chr1 68 159760331 159760261 View Gly GCC gctgacagta ctttcatttt 0 0 81.62 61.57 20.05 Both chr1 69 159706900 159706829 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 70 159706242 159706171 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 71 159705884 159705813 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 72 159699519 159699448 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 73 159698861 159698790 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 74 159698504 159698433 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 75 159692109 159692038 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 76 159691451 159691380 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 77 159691093 159691022 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 78 159684728 159684657 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 79 159684070 159683999 View Gly TCC gcgccgtgcg gcgggcggac 0 0 73.26 52.83 20.43 Both chr1 80 159683713 159683642 View Glu CTC aagccgcctc gccttccttc 0 0 76.61 53.94 22.67 Both chr1 81 159677310 159677239 View Asp GTC gtcgccgtcg gcagccgtgc 0 0 72.92 48.38 24.54 Both chr1 82 159676656 159676585 View Gly TCC gcgccgtgcg tcgggcggac 0 0 55.96 45.28 10.68 Eufind chr1 83 159664564 159664491 View Asn GTT attcgtgtca gctgaaattt 0 0 82.24 58.97 23.27 Both chr1 84 159658578 159658507 View Glu TTC tcaccagccc gtttgctttt 0 0 72.33 49.66 22.67 Both chr1 85 159636186 159636114 View Val CAC ccaccgcctg aagtggttcc 0 0 87.39 62.20 25.19 Both chr1 86 157378098 157378025 View Arg TCT gtgtggtgag gtcacctggc 0 0 76.29 56.97 19.32 Both chr1 87 148284076 148284006 View Ala AGC aagaattaaa caaaggtttt 0 0 48.21 38.20 10.01 Eufind chr1 88 147994965 147994895 View Pseudo CCT cataagagcc acaagttttg 0 0 21.62 25.69 -4.07 Eufind chr1 89 147978495 147978422 View Asn GTT gctcagccat tcgctggtct 0 0 71.43 52.10 19.33 Both chr1 90 147950785 147950712 View Val CAC tccgcctgtg taagtttttt 0 0 77.15 52.69 24.46 Both chr1 91 147946904 147946834 View Pseudo CCC ctagagagag agaggtattt 0 0 49.64 48.87 0.77 Eufind chr1 92 147939600 147939529 View Pseudo GAA tttccgcatc ttgttttgca 0 0 32.31 33.56 -1.25 Eufind chr1 93 147936754 147936681 View Asn GTT aactgaggtt tgcttttaaa 0 0 46.92 38.13 8.79 Eufind chr1 94 147931051 147930979 View Glu TTC tgctgttgtt tacatgcttt 0 0 40.45 33.79 6.66 Both chr1 95 147882314 147882241 View Asn GTT agcagtgctt cttattggaa 0 0 60.57 47.82 12.75 Both chr1 96 147609775 147609705 View Pseudo CCT cataagagcc acaagttttg 0 0 27.53 26.26 1.27 Eufind chr1 97 147592969 147592896 View Asn GTT gctcagccat tcgctgatct 0 0 59.90 40.57 19.33 Both chr1 98 147565251 147565179 View Val CAC tccgcgtgtg gaggtttttt 0 0 82.06 59.39 22.67 Both chr1 99 147561360 147561290 View Val CAC ctggggagag agaggttctt 0 0 60.62 54.90 5.72 Eufind chr1 100 147554054 147553983 View Pseudo GAA tttccgcatc ttgttttgca 0 0 32.35 31.31 1.04 Eufind chr1 101 147551200 147551127 View Asn GTT aactgaggtt tgcttttaaa 0 0 51.19 42.40 8.79 Eufind chr1 102 147545481 147545409 View Pseudo TTC tgctgttgtt tacatgcttt 0 0 35.32 33.32 2.00 Eufind chr1 103 147497267 147497194 View Asn GTT ggtagtgctt ctgattgcaa 0 0 77.16 55.90 21.26 Both chr1 104 147478645 147478572 View Pseudo GTT tacactacgt gctgctgctc 0 0 41.72 39.99 1.73 Eufind chr1 105 147428323 147428252 View Pseudo TTC gagatttctg tgacttttgc 0 0 41.70 39.78 1.92 Eufind chr1 106 147422523 147422452 View His GTG cctgtggctc atgtcgttct 0 0 61.09 38.72 22.37 Both chr1 107 147027053 147026980 View Asn GTT gacagtacct cttgtttgag 0 0 80.52 57.26 23.26 Both chr1 108 146865011 146864938 View Asn GTT gacagtacct cttgtttgag 0 0 80.52 57.26 23.26 Both chr1 109 146317757 146317684 View Pseudo GTT tacaatacct cctcctccag 0 0 34.29 34.99 -0.70 Eufind chr1 110 146247725 146247654 View Pseudo TTC tgggtcagct tacattttgt 0 0 43.43 39.38 4.05 Eufind chr1 111 146241540 146241469 View His GTG cctgtggctc atgtcgttag 0 0 64.63 37.18 27.45 Both chr1 112 146204077 146204006 View Gln CTG tatgttgcat ttgtgtttca 0 0 68.84 45.55 23.29 Both chr1 113 145987464 145987391 View Asn GTT agtagttctt cttgctctag 0 0 70.44 53.85 16.59 Both chr1 114 144943455 144943384 View Gln CTG gctagtgtga ttctgtataa 0 0 40.01 30.12 9.89 Eufind chr1 115 144690464 144690391 View Asn GTT agtagttctt cttgctctag 0 0 70.44 53.85 16.59 Both chr1 116 144110661 144110590 View Glu CTC gttagcagct agagtaacat 0 0 76.61 53.94 22.67 Both chr1 117 144109292 144109221 View Gly TCC tatttcagat gtgtcagttt 0 0 73.26 52.83 20.43 Both chr1 118 144108309 144108238 View His GTG ttagtggctc ggtggttcta 0 0 64.63 37.18 27.45 Both chr1 119 144106951 144106879 View Lys CTT agtaatcagt ctgtgttttt 0 0 80.47 57.81 22.66 Both chr1 120 144090748 144090677 View Gln CTG gctagtgtga ttctgtataa 0 0 44.40 36.15 8.25 Eufind chr1 121 143550864 143550793 View Gln CTG gctagtgtga ttctgtataa 0 0 44.40 36.15 8.25 Eufind chr1 122 143200273 143200200 View Asn GTT agccattaga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 123 143020044 143019971 View Asn GTT agccattaga gcaccttttg 0 0 49.96 42.19 7.77 Both chr1 124 142455154 142455081 View Pseudo GTT tacaatacct cctcctccag 0 0 43.05 43.73 -0.68 Eufind chr1 125 108297868 108297798 View Pseudo ??? ggagcatggg ctgacaggct 0 0 20.67 26.68 -6.01 Eufind chr1 126 93754494 93754422 View Cys GCA aacaggtaaa tccaggatgt 0 0 74.38 55.13 19.25 Both chr1 127 55196202 55196130 View Lys CTT tgttgcaaaa ccaaattgtt 0 0 58.75 43.75 15.00 Eufind chr1 128 17053558 17053487 View Pseudo CTG gctattgtga ttctgtataa 0 0 25.51 21.41 4.10 Eufind chr1 129 16879160 16879088 View Val CAC tgcatatgca tcgtggtttg 0 0 52.98 40.16 12.82 Both chr1 130 16877423 16877353 View Gly CCC ttccagagag cgtggttgtt 0 0 69.75 57.72 12.03 Both chr1 131 16746819 16746747 View Pseudo CAC tgcatatgca tcgtgttttg 0 0 41.96 41.19 0.77 Both chr1 132 16745091 16745021 View Gly CCC ttacgcagag agagggtctt 0 0 78.31 58.27 20.04 Both chr1 133 16734432 16734361 View Glu TTC ctcctgtgtg ttgttttaca 0 0 72.33 49.66 22.67 Both chr1 134 16731553 16731480 View Asn GTT gattgaggtt tgattttaaa 0 0 48.81 40.01 8.80 Eufind chr1 135 16719740 16719667 View Asn GTT ggaagcgctt cttattggaa 0 0 77.65 54.54 23.11 Both chr1 136 7912995 7912926 View Pseudo ??? tttaggacac gccttccttc 0 0 35.54 39.08 -3.54 Eufind   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1_random 1 553277 553348 View Gln CTG gctagtgtga ttctgtataa 0 0 44.40 36.15 8.25 Eufind chr1_random 2 906435 906508 View Asn GTT gctcagccat tcgctgatat 0 0 66.79 51.30 15.49 Both   chr20 1 17803142 17803219 View Gln CTG gcagccctca gctggctgtg 0 0 21.25 13.07 8.18 Eufind chr20 2 29552364 29552435 View Pseudo AGA aaacttatca tttgctgtct 0 0 20.36 18.08 2.28 Eufind chr20 3 43384415 43384487 View Pseudo CAC cccatgcctg cgagattttc 0 0 29.18 32.04 -2.86 Eufind chr20 4 55366909 55366835 View Pseudo TAA aacagggttt acatgcctgt 0 0 25.92 -2.01 27.93 Both chr20 5 50651822 50651745 View Pseudo AAT tgccatgtgt aaacttgata 0 0 23.04 21.47 1.57 Eufind chr20 6 48385830 48385749 View Leu AAG tttccacgga acttactggc 0 0 40.72 34.21 6.51 Eufind chr20 7 13918541 13918470 View Pseudo CTC atgtatttgg aaggaaaaaa 0 0 27.08 35.45 -8.37 Eufind   chr21 1 14848387 14848457 View Sup TTA gttttggaaa tttacctggg 0 0 22.35 13.61 8.74 Eufind chr21 2 17749048 17748978 View Gly GCC ttctatcggt gcacgaaaat 0 0 82.15 62.58 19.57 Both   chr22 1 42877870 42877955 View SeC(e) TCA ggcaccaaaa cccggcgcag 0 0 62.60 0.00 0.00 Eufind   chr2 1 11609278 11609349 View Pseudo CCC aaagacatcc ccaagaagtg 0 0 43.42 45.38 -1.96 Eufind chr2 2 27127154 27127242 View Tyr GTA cgcagcggag cttcgtctgt 27127191 27127206 75.87 49.46 26.41 Both chr2 3 27127586 27127658 View Ala AGC agcagcaggc ctcagctttt 0 0 63.68 41.02 22.66 Both chr2 4 30131072 30131144 View Leu AAG atcaggctca gtgggactac 0 0 46.12 31.06 15.06 Eufind chr2 5 42891180 42891272 View Ile TAT attcagcaga agaccctttt 42891218 42891236 68.11 39.92 28.19 Both chr2 6 74977554 74977622 View Glu TTC acgcactcta accagttctt 0 0 23.54 15.68 7.86 Eufind chr2 7 77749101 77749171 View Pseudo AGG ttgtgagtgt aacttttagt 0 0 30.29 32.31 -2.02 Eufind chr2 8 87193084 87193155 View Pseudo AGG ttgtgagtgt aacttttagt 0 0 37.07 37.06 0.01 Eufind chr2 9 117497887 117497961 View Pseudo TAA aacaaggttt acatgcctat 0 0 34.06 2.70 31.36 Both chr2 10 131856612 131856681 View Pseudo TGA atatcttatt cttaggtctt 0 0 27.03 9.37 17.66 Eufind chr2 11 131859603 131859674 View Pseudo TTG gaccttactt aaatatgagg 0 0 25.61 8.54 17.07 Eufind chr2 12 150927523 150927595 View Pseudo CTC aagtgtcgca ccttccttct 0 0 29.78 33.45 -3.67 Eufind chr2 13 156965527 156965598 View Ala CGC ctttcggctg aatcagccga 0 0 73.12 53.51 19.61 Both chr2 14 218818794 218818886 View Tyr ATA agttaaggtc gacaagtaca 218818831 218818850 55.93 33.83 22.10 Both chr2 15 219199376 219199451 View Pseudo CTG attattctca gttactgatt 0 0 22.40 19.00 3.40 Eufind chr2 16 223894631 223894559 View Pseudo TTT gagcataagg ttaaaatctc 0 0 34.01 35.48 -1.47 Eufind chr2 17 203937446 203937376 View Pseudo TTC ataagtcagc caagtatctt 0 0 39.76 47.73 -7.97 Eufind chr2 18 159446488 159446417 View Pseudo CTC attctaagtt ccaagaaatg 0 0 31.33 27.50 3.83 Eufind chr2 19 156965975 156965905 View Gly GCC tttgctataa agttttgact 0 0 81.62 61.57 20.05 Both chr2 20 130811242 130811171 View Glu TTC tttcagcagt caaaagtggc 0 0 76.46 53.14 23.32 Both chr2 21 130749563 130749494 View Ser TGA atatcttatt cttaggtctt 0 0 31.73 14.68 17.05 Eufind chr2 22 130746452 130746381 View Pseudo TTG gaccttactt aaatatgagg 0 0 28.85 5.17 23.68 Eufind chr2 23 117499050 117498979 View Gln TTG gaccttactc aaataagagg 0 0 33.55 13.79 19.76 Eufind chr2 24 95580992 95580921 View Pseudo CTC gttgtaagtt ccaagaaatg 0 0 23.39 40.94 -17.55 Eufind chr2 25 71127068 71126996 View Pseudo CTC gttccaagtt aaccaagtaa 0 0 22.62 23.00 -0.38 Eufind chr2 26 70517535 70517465 View Pseudo ??? tgatcttcac cttgttagct 0 0 20.34 24.35 -4.01 Eufind chr2 27 70329697 70329627 View Gly CCC catgtcaaca taggcgtttt 0 0 76.98 51.05 25.93 Both chr2 28 45791017 45790945 View Pseudo TTG acttacaaga cttgctttac 0 0 35.83 33.23 2.60 Eufind   chr3 1 13808887 13808954 View Pseudo CTA tgccgtggag catcccggct 0 0 26.42 28.86 -2.44 Eufind chr3 2 170972712 170972784 View Val AAC ccaaagtggg cactaaaaaa 0 0 86.79 61.60 25.19 Both chr3 3 185848859 185848789 View Asp GTC ggataggaag gctgttgatg 0 0 43.84 25.54 18.30 Both chr3 4 149799324 149799253 View His GTG ccagtagcat ttgtgggaac 0 0 22.51 15.06 7.45 Eufind chr3 5 149703999 149703918 View Leu AAG atggaggaga atttgtcgct 0 0 20.79 13.54 7.25 Eufind chr3 6 133433403 133433332 View Cys GCA ttaccagcat gtgcatttgt 0 0 74.20 55.02 19.18 Both chr3 7 133430705 133430634 View Cys GCA ttggcatcaa atgacatact 0 0 74.42 58.96 15.46 Both chr3 8 126895938 126895867 View Glu CTC gttctaagtt ccaagaaatg 0 0 29.87 16.28 13.59 Eufind chr3 9 108103639 108103568 View Pseudo TTG gaccttagta aaataagagg 0 0 32.34 6.11 26.23 Both chr3 10 105362285 105362214 View Pseudo CTC ttttttatta ccaagaaatg 0 0 25.40 25.15 0.25 Eufind chr3 11 45705567 45705495 View Arg ACG tagcaagtcg cgatgtctgt 0 0 68.07 51.18 16.89 Both chr3 12 17716468 17716396 View Pseudo GCA aacaggtgaa tttctcactt 0 0 36.14 39.20 -3.06 Eufind   chr4 1 156603338 156603409 View Pseudo TTG gaccttaatc aaattagagg 0 0 20.26 -1.82 22.08 Eufind chr4 2 156604502 156604428 View Leu TAA aacagggttt atatggctat 0 0 48.70 14.73 33.97 Both chr4 3 124649526 124649455 View Cys GCA aagcagtggt ctgtgctctg 0 0 77.71 58.47 19.24 Both chr4 4 40603572 40603500 View Gln TTG ggagagagga aaatgtttcc 0 0 31.57 26.05 5.52 Both chr4 5 7376810 7376739 View Pseudo TTA aggctgccga cctgctggtt 0 0 21.73 38.92 -17.19 Eufind   chr5 1 151968789 151968964 View Pseudo ACA atattcgggg ttaatgagct 151968825 151968928 29.48 30.37 -0.89 Eufind chr5 2 180456676 180456748 View Val CAC catcaagccg gttccttcta 0 0 87.39 62.20 25.19 Both chr5 3 180461446 180461527 View Leu AAG ccagaaggag gcttgttgtg 0 0 71.96 50.58 21.38 Both chr5 4 180523760 180523832 View Val AAC acgcgtgcaa gaatcttatg 0 0 86.79 61.60 25.19 Both chr5 5 180529216 180529288 View Val AAC acgcgtgcaa gactcttatg 0 0 86.79 61.60 25.19 Both chr5 6 180533256 180533328 View Val CAC tcccatgcag cctccttctg 0 0 87.39 62.20 25.19 Both chr5 7 180547307 180547388 View Leu AAG gcggcaaaga gtttgtggta 0 0 69.84 50.16 19.68 Both chr5 8 180566474 180566545 View Ala TGC gagagtaggt gtgtagtttt 0 0 74.45 50.86 23.59 Both chr5 9 180567361 180567433 View Lys CTT gtcatcgggc gcaactggtc 0 0 80.47 57.81 22.66 Both chr5 10 180582073 180582001 View Val CAC agccaaggtg cgttttggtc 0 0 87.39 62.20 25.19 Both chr5 11 180581657 180581585 View Lys CTT agacatggcc taatttcgct 0 0 80.47 57.81 22.66 Both chr5 12 180577948 180577876 View Val AAC ctccgcatct agactgtgtt 0 0 86.79 61.60 25.19 Both chr5 13 180551364 180551293 View Thr TGT accaacagcc gcttccgtct 0 0 75.64 49.16 26.48 Both chr5 14 180548531 180548460 View Pro TGG ctagacagcc actttttcat 0 0 76.15 54.09 22.06 Both chr5 15 180548094 180548022 View Val AAC gtaggtgtgg tgccacagtg 0 0 84.70 59.52 25.18 Both chr5 16 180533731 180533650 View Leu AAG cccggaggaa gcttgttgtg 0 0 71.96 50.58 21.38 Both chr5 17 180524251 180524170 View Pseudo AAG ccaggagaaa acttgttgtg 0 0 25.68 29.21 -3.53 Eufind chr5 18 180461931 180461859 View Val CAC catcaagccg gttccttcta 0 0 87.39 62.20 25.19 Both chr5 19 180457161 180457080 View Leu AAG ccagaaggag gcttgttgtg 0 0 71.96 50.58 21.38 Both chr5 20 159324696 159324619 View Leu CAG tatttattga ttctcagctg 0 0 20.45 13.88 6.57 Eufind chr5 21 151228338 151228267 View Pseudo CTG ggatatcatg cttactagtt 0 0 25.76 25.63 0.13 Eufind chr5 22 141754243 141754172 View Asp GTC aagactgtcg gcagcagtcc 0 0 54.87 35.22 19.65 Eufind chr5 23 77354604 77354532 View Pseudo TTG accctgggga gttactagct 0 0 24.04 26.39 -2.35 Eufind chr5 24 26234368 26234296 View Lys CTT atgaaatcaa ccagatgaag 0 0 53.34 37.86 15.48 Eufind   chr6 1 18944381 18944452 View Gln CTG cagggaggag ttcatattgg 0 0 73.65 50.36 23.29 Both chr6 2 26394733 26394804 View Met CAT ctggcagaac ggtccttttt 0 0 68.98 40.96 28.02 Both chr6 3 26407884 26407956 View Arg TCG aactgcgggg agtggggttc 0 0 69.55 49.67 19.88 Both chr6 4 26431025 26431097 View Arg TCG tgtaacccgg tttgagatac 0 0 72.33 51.13 21.20 Both chr6 5 26435796 26435877 View Ser AGA tttggtatct gcagtgggtt 0 0 88.01 56.90 31.11 Both chr6 6 26436347 26436419 View Arg ACG gttcgtcaga ttcgacttta 0 0 72.37 52.49 19.88 Both chr6 7 26629415 26629497 View Leu CAG gcataagcgc gttcgtactt 0 0 77.22 46.89 30.33 Both chr6 8 26645705 26645777 View Arg ACG ggtacgcgca gtgtaagcag 0 0 72.37 52.49 19.88 Both chr6 9 26646261 26646333 View Val CAC cccttagtgg cgtttttttt 0 0 87.39 62.20 25.19 Both chr6 10 26661710 26661781 View Ala CGC tcttagggta agttgtttta 0 0 78.91 55.32 23.59 Both chr6 11 26662329 26662402 View Ile AAT ggagacaggt actttgtttt 0 0 80.66 62.17 18.49 Both chr6 12 26663477 26663548 View Pro AGG atgctcaggc tagttttgtc 0 0 75.92 53.85 22.07 Both chr6 13 26664753 26664825 View Lys CTT gttcgggtga ctctggtttt 0 0 80.47 57.81 22.66 Both chr6 14 26677065 26677155 View Tyr GTA tcgtgtgaat gttcacaatt 26677102 26677119 76.45 50.04 26.41 Both chr6 15 26683777 26683866 View Tyr GTA gctaggggtc cgaaagtttt 26683814 26683830 72.82 50.88 21.94 Both chr6 16 26685311 26685399 View Tyr GTA cgttccgtgt cggtagtttt 26685348 26685363 77.01 52.31 24.70 Both chr6 17 26703081 26703169 View Tyr GTA gtaatgacat gttccatttt 26703118 26703133 73.91 49.21 24.70 Both chr6 18 26781569 26781641 View Ala AGC tccctgatat agctttatta 0 0 60.72 36.06 24.66 Both chr6 19 26790694 26790766 View Ala AGC ccctgatgtg aactttatta 0 0 62.45 37.80 24.65 Both chr6 20 26795464 26795536 View Ala AGC gccctgatgt agctttatta 0 0 63.16 38.50 24.66 Both chr6 21 26809691 26809763 View Met CAT tcaacagcaa tcacttctgc 0 0 75.06 52.49 22.57 Both chr6 22 26813585 26813657 View Ala AGC cccctgacgt agctttatta 0 0 61.81 37.15 24.66 Both chr6 23 26836235 26836307 View Ala AGC atgcggtgtg gcttctttta 0 0 54.69 35.00 19.69 Both chr6 24 26838716 26838788 View Ala AGC tatcctcagt gttccttgtc 0 0 63.36 40.25 23.11 Both chr6 25 26859897 26859969 View Ala AGC agtgtagtgt gcttctttta 0 0 46.89 33.96 12.93 Both chr6 26 26860609 26860682 View Undet ??? tttctcctct gtttcttgtc 0 0 39.46 19.95 19.51 Eufind chr6 27 26874423 26874495 View Met CAT gcacttcgtc gcttttgcaa 0 0 75.76 53.19 22.57 Both chr6 28 26888811 26888884 View Ile AAT ccgccggcgg caggcttttc 0 0 78.57 60.09 18.48 Both chr6 29 27096104 27096197 View Ile TAT gaaactgggt ttgttttcca 27096142 27096161 67.58 39.38 28.20 Both chr6 30 27167500 27167571 View Pro CGG atttctaagt acttcatttt 0 0 71.93 50.03 21.90 Both chr6 31 27173064 27173145 View Ser GCT gggttatcaa ggggaggtct 0 0 88.12 59.22 28.90 Both chr6 32 27226001 27226073 View Val CAC catggaatga cattttaggc 0 0 56.94 47.67 9.27 Eufind chr6 33 27233885 27233956 View His GTG ctggtggcgt gtaccttgat 0 0 64.63 37.18 27.45 Both chr6 34 27238029 27238102 View Thr AGT gcccaacagg tacgtgttca 0 0 80.30 60.85 19.45 Both chr6 35 27285607 27285688 View Ser CGA catttagagg cttctcggta 0 0 90.35 61.17 29.18 Both chr6 36 27290931 27291003 View Arg ACG gcgcaaccga ggtgttaatc 0 0 68.07 51.18 16.89 Both chr6 37 27311267 27311339 View Val AAC cactaagcga gagcgtagtt 0 0 74.63 59.79 14.84 Both chr6 38 27349718 27349791 View Ile AAT ccaaaatgtt catattttcc 0 0 75.35 57.39 17.96 Both chr6 39 27359843 27359916 View Pseudo AAT ttcgcgtcgt cagtgggtgt 0 0 44.67 41.41 3.26 Eufind chr6 40 27366384 27366456 View Val TAC cagcacacag acttgcaatt 0 0 76.42 49.86 26.56 Both chr6 41 27369650 27369723 View Pseudo ACT atttgcggtc ttggcttttt 0 0 49.68 46.01 3.67 Eufind chr6 42 27371191 27371262 View Gln CTG ttcagcttca tggatttagt 0 0 68.41 48.10 20.31 Both chr6 43 27373754 27373835 View Ser GCT tccccagaag accgttttct 0 0 86.80 59.22 27.58 Both chr6 44 27554570 27554651 View Ser AGA ctccattcgt ggatgtttta 0 0 88.01 56.90 31.11 Both chr6 45 27555432 27555503 View Asp GTC tcacgtcaat gaggcttaaa 0 0 72.92 48.38 24.54 Both chr6 46 27571572 27571653 View Ser AGA ttccacagct gggtggtttt 0 0 88.01 56.90 31.11 Both chr6 47 27578797 27578878 View Ser AGA gtgattctgt agttcgaggt 0 0 88.01 56.90 31.11 Both chr6 48 27579502 27579573 View Asp GTC gcagagttct aaaagttgct 0 0 72.92 48.38 24.54 Both chr6 49 27595287 27595358 View Gln CTG gctattgcga gtcgtttctt 0 0 73.65 50.36 23.29 Both chr6 50 27607966 27608047 View Ser AGA tgtccttcac gtccctttct 0 0 86.61 55.50 31.11 Both chr6 51 27621447 27621528 View Ser TGA gcgtaggtag gttttaccag 0 0 88.73 57.62 31.11 Both chr6 52 27637942 27638028 View Arg TCT agctcaagca catgttgcat 27637979 27637992 65.24 49.75 15.49 Both chr6 53 27651825 27651897 View Lys TTT tcgcaaaaga ttgagtgtag 0 0 59.40 50.33 9.07 Eufind chr6 54 27694114 27694187 View Thr CGT attctatcgt aacagactgc 0 0 63.29 43.60 19.69 Eufind chr6 55 27707179 27707272 View Ile TAT aggaaagcat tgttttcttc 27707217 27707236 68.23 40.03 28.20 Both chr6 56 27740524 27740599 View Phe GAA cttatagatg gctgtttccg 0 0 53.54 45.11 8.43 Eufind chr6 57 27744341 27744414 View Ile AAT gcattcgtgt ctggatgcca 0 0 76.09 57.61 18.48 Both chr6 58 27758467 27758540 View Val CAC ttggaagttg cctcctgaga 0 0 33.44 24.52 8.92 Eufind chr6 59 27763946 27764019 View Ile AAT cctgtcatcc agtattctct 0 0 83.32 61.08 22.24 Both chr6 60 27802452 27802525 View Thr AGT acacaggtga ctttatttct 0 0 81.60 60.97 20.63 Both chr6 61 27853643 27853714 View Met CAT gttttccgtt aagaagggtg 0 0 62.43 34.42 28.01 Both chr6 62 28288794 28288875 View Ser GCT ttctttgtgt gctgcatagc 0 0 83.46 55.88 27.58 Both chr6 63 28613346 28613439 View Ile TAT tatttctgtg gttttactat 28613384 28613403 65.86 37.67 28.19 Both chr6 64 28665135 28665206 View Gln TTG ccttgtggtt ttcaaaggtg 0 0 71.88 48.94 22.94 Both chr6 65 28682912 28682983 View Ala AGC gtctgtggtt ccagttttgg 0 0 76.69 53.05 23.64 Both chr6 66 28719201 28719272 View Ala TGC gtctatgtgt ataggtatta 0 0 78.55 54.96 23.59 Both chr6 67 28786345 28786416 View Ala AGC ctagctttaa tgtattatgc 0 0 75.68 50.52 25.16 Both chr6 68 28795460 28795531 View Ala AGC ctattgcaac gtagttgata 0 0 70.19 52.06 18.13 Both chr6 69 28801774 28801847 View Thr AGT agtctccgtg tggttggcaa 0 0 82.17 62.61 19.56 Both chr6 70 28805071 28805142 View Ala CGC catgcggtca gttgtccatt 0 0 70.09 49.55 20.54 Both chr6 71 28823500 28823572 View Lys TTT tctacccagg aaatatttgt 0 0 72.00 55.95 16.05 Both chr6 72 28840143 28840215 View Phe GAA gcttagagta ggtttgtttg 0 0 59.98 54.74 5.24 Eufind chr6 73 28957144 28957216 View Arg CCG tttggcggtt tcgttttgcg 0 0 69.88 52.79 17.09 Both chr6 74 29016809 29016913 View Leu CAA tgtcccaggt caactatctt 29016847 29016868 69.73 46.29 23.44 Both chr6 75 29020331 29020403 View Met CAT agagacagtt aggcgtctgt 0 0 76.58 56.44 20.14 Both chr6 76 29026785 29026857 View Lys TTT tttgcaggga ggagtggtgg 0 0 83.80 62.78 21.02 Both chr6 77 29057955 29058026 View Glu CTC tacttcagct tgaggttttt 0 0 76.61 53.94 22.67 Both chr6 78 29064758 29064839 View Leu AAG tgtaatcaac agtacttttc 0 0 68.10 48.42 19.68 Both chr6 79 37395973 37396045 View Gln TTG gttagggact ctttcctaaa 0 0 21.80 12.98 8.82 Eufind chr6 80 58257213 58257286 View Ile AAT cccccggcgg caggcttttc 0 0 83.55 64.80 18.75 Both chr6 81 69971099 69971181 View Leu TAA ctcaaaaatc tgtttagttt 0 0 34.00 28.53 5.47 Eufind chr6 82 142620469 142620539 View Gly GCC ttccataggt acatggcatc 0 0 46.73 34.61 12.12 Eufind chr6 83 144579377 144579459 View Leu TAA caacgtctgc gctttaggtt 0 0 80.77 49.66 31.11 Both chr6 84 145545552 145545623 View Gln TTG attttggatt ttcaaaggag 0 0 59.31 47.11 12.20 Both chr6 85 163130072 163130004 View Pseudo TTC gagcatgcac gcttttcttc 0 0 22.25 19.82 2.43 Eufind chr6 86 156910812 156910738 View Pseudo TAC aacagagtct acgtgcccat 0 0 31.66 3.73 27.93 tRNAscan chr6 87 126143157 126143086 View Glu CTC ttgtgcaagt gtcttgtttt 0 0 76.61 53.94 22.67 Both chr6 88 79724801 79724729 View Pseudo GAA tttaagagta gaaacagttc 0 0 43.56 40.97 2.59 Eufind chr6 89 58304654 58304582 View Ala AGC tccctgatat agctttatta 0 0 57.89 37.78 20.11 Both chr6 90 58295475 58295403 View Ala AGC ccctgatgtg aactttatta 0 0 54.84 36.17 18.67 Both chr6 91 58290710 58290638 View Ala AGC cccctgatgt agctttatta 0 0 62.45 37.80 24.65 Both chr6 92 58276523 58276451 View Met CAT tcaacagcaa tcacttttgc 0 0 64.33 46.12 18.21 Both chr6 93 58272659 58272587 View Ala AGC cccctgacgt agctttatta 0 0 61.81 37.15 24.66 Both chr6 94 58250620 58250548 View Ala AGC agtgtagtgt gcttctttta 0 0 54.62 37.98 16.64 Both chr6 95 58249908 58249836 View Ala AGC tttctccctc gtttcttgtc 0 0 42.26 30.05 12.21 Both chr6 96 29057500 29057428 View Phe GAA cgtgggcgga tgagagcgct 0 0 84.19 62.58 21.61 Both chr6 97 29029093 29029021 View Met CAT ctagttgtct gctgccattt 0 0 76.58 56.44 20.14 Both chr6 98 29019459 29019378 View Leu AAG ccctgtgggt gtgtgaggta 0 0 69.84 50.16 19.68 Both chr6 99 29017428 29017357 View Gln CTG tgttaagtag ttcatttctc 0 0 73.65 50.36 23.29 Both chr6 100 28972084 28971979 View Leu CAA tatgcagtgt catacttttc 28972046 28972024 68.23 44.80 23.43 Both chr6 101 28939512 28939441 View Ala AGC ttgagcgttg gcttcatttt 0 0 77.18 53.38 23.80 Both chr6 102 28914271 28914200 View Ala AGC gtttcagtac ttccttttgc 0 0 77.18 53.38 23.80 Both chr6 103 28899145 28899072 View Phe GAA ctccagagta gatacctttt 0 0 67.94 47.06 20.88 Both chr6 104 28893062 28892991 View Ala TGC cttatagtga agcgatggtt 0 0 70.95 44.60 26.35 Both chr6 105 28887899 28887828 View Ala AGC gtcttccaga ggttttgttt 0 0 71.23 47.45 23.78 Both chr6 106 28883661 28883589 View Phe GAA gatcacggtg gttgcatttt 0 0 82.13 62.21 19.92 Both chr6 107 28878626 28878556 View Ala TGC gttatagtaa agtgatggtt 0 0 59.75 46.06 13.69 Eufind chr6 108 28871791 28871720 View Ala AGC tgagtccaga ggccgtgttt 0 0 81.12 55.59 25.53 Both chr6 109 28866550 28866478 View Phe GAA aattcgggaa gggttttttt 0 0 84.19 62.58 21.61 Both chr6 110 28865597 28865526 View Ala TGC ttttcaggaa aacggtgact 0 0 79.16 56.03 23.13 Both chr6 111 28854594 28854523 View Pseudo AGC gatctcctgc ctcttttttt 0 0 32.22 28.41 3.81 tRNAscan chr6 112 28839426 28839353 View Phe GAA gcttagagta agcatctttt 0 0 56.32 40.01 16.31 Both chr6 113 28834191 28834120 View Ala TGC ctttcaggag aatggtggtt 0 0 67.60 50.39 17.21 Both chr6 114 28818780 28818708 View Arg CCG acccgcgtgc tgttcttact 0 0 69.88 52.79 17.09 Both chr6 115 28811256 28811185 View Val AAC cattgtaagt caagtacatt 0 0 64.08 51.40 12.68 Both chr6 116 28802906 28802834 View Pseudo GAA tctacagtaa acttttcctt 0 0 27.39 35.70 -8.31 Eufind chr6 117 28771759 28771688 View Ala CGC ttgagagtca tttttccttc 0 0 56.63 43.69 12.94 Eufind chr6 118 28769039 28768966 View Pseudo TTT gctgtcgtga taaggccttg 0 0 44.65 41.67 2.98 Eufind chr6 119 28749663 28749592 View Ala CGC acttgtgcca aggcgatcac 0 0 74.81 51.23 23.58 Both chr6 120 28734064 28733993 View Ala AGC ttttcgaggt gtgtttttgt 0 0 75.78 57.59 18.19 Both chr6 121 28724036 28723963 View Thr CGT cagcacggct tagggtgtgc 0 0 80.30 62.20 18.10 Both chr6 122 28709909 28709838 View Pseudo TGC tagtgcttag ctttagcata 0 0 42.75 44.42 -1.67 Eufind chr6 123 28673177 28673096 View Ser GCT cttagcatgt tttctggagg 0 0 85.34 57.77 27.57 Both chr6 124 28618942 28618870 View Arg TCG taagccatgg attctccctt 0 0 69.08 49.20 19.88 Both chr6 125 28564822 28564749 View Thr CGT gcttccgcgt gatgttttcc 0 0 80.88 62.42 18.46 Both chr6 126 28554460 28554379 View Leu AAG ggactagcgt ggtttattgc 0 0 59.09 44.72 14.37 Both chr6 127 28550381 28550308 View Thr TGT tgcacatgta taaggttttc 0 0 84.82 62.41 22.41 Both chr6 128 27978735 27978665 View Gly GCC tgtacgcgag acgatgacgt 0 0 81.62 61.57 20.05 Both chr6 129 27978321 27978250 View Met CAT taccgtatag tttttttttt 0 0 68.98 40.96 28.02 Both chr6 130 27871690 27871619 View Gln TTG gcttataggt tcttggctct 0 0 68.31 52.31 16.00 Both chr6 131 27867185 27867114 View Gln CTG ctaagaactt agtctgctgt 0 0 66.25 50.25 16.00 Both chr6 132 27829230 27829158 View Val AAC gtaaccgttg aagagagtcg 0 0 86.79 61.60 25.19 Both chr6 133 27804378 27804306 View Val CAC tgagttaggg ttgtattgtc 0 0 64.50 50.03 14.47 Both chr6 134 27796959 27796877 View Leu TAA tgccccagtc ggttaagttt 0 0 80.48 52.10 28.38 Both chr6 135 27760526 27760453 View Thr AGT tctcggctgt tgatttctgt 0 0 83.05 63.49 19.56 Both chr6 136 27756936 27756864 View Val AAC gaaagagggt ggtaggctta 0 0 79.68 59.48 20.20 Both chr6 137 27748289 27748208 View Ser CGA tgtcctcgga tcgccatttt 0 0 89.16 57.73 31.43 Both chr6 138 27746395 27746323 View Arg ACG ttacaggcag cttgtgctct 0 0 68.07 51.18 16.89 Both chr6 139 27726758 27726686 View Val AAC cagcagggtt agtggttacc 0 0 81.58 56.46 25.12 Both chr6 140 27681503 27681396 View Leu CAA ttgtcacagt cagcctgatc 27681465 27681442 68.53 44.44 24.09 Both chr6 141 27678433 27678327 View Leu CAA aacagtgcgt cagctatttt 27678395 27678373 68.19 42.41 25.78 Both chr6 142 27668650 27668579 View Met CAT tgaaggggac ggtgcctgtt 0 0 68.98 40.96 28.02 Both chr6 143 27667644 27667572 View Lys TTT agtgtagaga aacttcagaa 0 0 83.31 61.95 21.36 Both chr6 144 27659286 27659215 View Asp GTC tgttaagtct acgaagcagt 0 0 64.62 47.56 17.06 Both chr6 145 27629252 27629171 View Ser AGA tgtcatgtct tttgaaattt 0 0 79.96 54.94 25.02 Both chr6 146 27623581 27623510 View Gln CTG taccaagagg gctcgaagat 0 0 72.00 48.70 23.30 Both chr6 147 27617614 27617533 View Ser AGA cattctttgt ataacgtttc 0 0 88.50 57.39 31.11 Both chr6 148 27581667 27581586 View Ser TGA acacaggtgc gtttggtttt 0 0 84.78 57.77 27.01 Both chr6 149 27410820 27410748 View Lys TTT tccctaagga ctaaaaatgc 0 0 81.41 62.43 18.98 Both chr6 150 27408814 27408743 View Met CAT gaaaccgctt tgagttttac 0 0 68.98 40.96 28.02 Both chr6 151 27379618 27379547 View Thr CGT tttctccgtg gggtgttttt 0 0 46.44 38.72 7.72 Eufind chr6 152 27356100 27356028 View Val CAC aaatgtcagg acctgtattt 0 0 87.34 62.56 24.78 Both chr6 153 27351042 27350969 View Ile AAT acccagcgtc cgtattttcc 0 0 82.10 61.21 20.89 Both chr6 154 27313402 27313329 View Ile AAT ttttccgggt cgagggttct 0 0 80.66 62.17 18.49 Both chr6 155 27306395 27306313 View Leu TAA ggctgttatc agcgttggtg 0 0 74.34 44.96 29.38 Both chr6 156 27289674 27289602 View Arg ACG ccacaacgac gaggcttatt 0 0 68.07 51.18 16.89 Both chr6 157 27281918 27281846 View Val CAC tcccacagtt ttctttactc 0 0 73.23 53.55 19.68 Both chr6 158 27253046 27252973 View Ile AAT ccaccaagga cttccgtggg 0 0 80.66 62.17 18.49 Both chr6 159 26904057 26903985 View Ala AGC tccctgatat aactttatta 0 0 62.45 37.80 24.65 Both chr6 160 26881822 26881750 View Ala AGC atgcggtgtg gcttctttta 0 0 54.69 35.00 19.69 Both chr6 161 26879341 26879269 View Ala AGC tatcctcagt gttccttgtc 0 0 63.36 40.25 23.11 Both chr6 162 26866601 26866529 View Met CAT atacttcgtc gcttttgcaa 0 0 75.76 53.19 22.57 Both chr6 163 26853307 26853234 View Ile AAT tagtaagcgg gacgtgactt 0 0 79.57 61.65 17.92 Both chr6 164 26843625 26843553 View Met CAT gcacttcgtc gcttttgcaa 0 0 75.76 53.19 22.57 Both chr6 165 26829273 26829200 View Ile AAT ccgccggcgg caggcttttc 0 0 78.57 60.09 18.48 Both chr6 166 26680143 26680071 View Ala AGC tttcccacac gttttatgtg 0 0 63.06 39.95 23.11 Both chr6 167 26641197 26641124 View Thr AGT caggcatggt gttgtagttt 0 0 83.05 63.49 19.56 Both chr6 168 26439722 26439651 View Trp CCA gtgtcccgga acagttttta 0 0 74.00 52.21 21.79 Both chr6 169 26438579 26438508 View Met CAT tgactcgcgt gggagcgttt 0 0 68.98 40.96 28.02 Both chr6 170 26427380 26427309 View Trp CCA gggtctccgt tgggtggttg 0 0 74.00 52.21 21.79 Both chr6 171 26421402 26421331 View Met CAT ctgtcgagac tatggccgca 0 0 68.98 40.96 28.02 Both chr6 172 26420884 26420803 View Ser TGA aaggaggtac gcgtgctttt 0 0 88.25 57.14 31.11 Both chr6 173 26420025 26419954 View Gln TTG ctgtgttgtt accaaacttt 0 0 68.31 52.31 16.00 Both chr6 174 26419474 26419403 View Gln TTG ggcggaaggc gtcctgcttt 0 0 68.31 52.31 16.00 Both chr6 175 26413780 26413697 View Ser GCT acacatatca ctcggctttc 0 0 67.16 46.87 20.29 Eufind   Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr7 1 98905243 98905314 View Trp CCA aggtttccaa aacatgtgat 0 0 70.08 48.29 21.79 Both chr7 2 128210740 128210811 View Pro AGG aactaccagt tactttttct 0 0 75.92 53.85 22.07 Both chr7 3 138675986 138676058 View Arg CCT gtttgcagaa gcctgtgact 0 0 67.28 54.18 13.10 Both chr7 4 141149826 141149897 View Pseudo TTG gaccttagtt aaataacagg 0 0 34.30 8.89 25.41 Eufind chr7 5 148638214 148638285 View Cys GCA aatggcagca agttttcttc 0 0 79.54 58.90 20.64 Both chr7 6 148659153 148659224 View Cys GCA aacaaggcct actcctttta 0 0 74.20 55.02 19.18 Both chr7 7 148874564 148874635 View Cys GCA tagaagctga ggaaagagtc 0 0 69.62 50.30 19.32 Both chr7 8 148884735 148884806 View Cys GCA atgacaagca gcactttttc 0 0 59.93 49.28 10.65 Eufind chr7 9 148886066 148886138 View Tyr GTA agtgtgccat tctgttaagt 0 0 49.38 37.78 11.60 Eufind chr7 10 148912749 148912820 View Cys GCA acctatgact acactgttct 0 0 69.82 51.63 18.19 Both chr7 11 148925979 148926050 View Cys GCA atgacaagca actgcacttt 0 0 65.84 49.63 16.21 Both chr7 12 148936400 148936471 View Ser AGA tcctatgact accctgtttt 0 0 62.08 51.44 10.64 Eufind chr7 13 148963711 148963782 View Cys GCA ccctgggcct accctgtttc 0 0 74.20 55.02 19.18 Both chr7 14 148992848 148992919 View Cys GCA caccaggcaa gatgccactt 0 0 60.15 43.42 16.73 Both chr7 15 149035693 149035764 View Cys GCA acttccatca gctgtgttct 0 0 74.20 55.02 19.18 Both chr7 16 149019276 149019205 View Cys GCA tgtggcccat cgctggtttt 0 0 69.30 53.57 15.73 Both chr7 17 148975050 148974979 View Cys GCA gtaagtgggt ctctagttca 0 0 71.81 51.29 20.52 Both chr7 18 148941160 148941089 View Cys GCA gcaattacat tcctgttttc 0 0 67.69 49.50 18.19 Both chr7 19 148923309 148923238 View Cys GCA caccaggcaa gctgccactt 0 0 57.52 43.40 14.12 Both chr7 20 148917168 148917097 View Cys GCA gtagtcaaat ccctgttttc 0 0 77.55 55.23 22.32 Both chr7 21 148743233 148743162 View Cys GCA cccgtgtgac gaatagtggc 0 0 73.76 55.65 18.11 Both chr7 22 148705605 148705534 View Cys GCA tgagtacctt ctttgtcact 0 0 73.86 54.68 19.18 Both chr7 23 148703854 148703783 View Cys GCA gagtaccttg ttgtcactac 0 0 68.91 54.10 14.81 Both chr7 24 148684753 148684678 View Pseudo GTA tatactattc agaattcatt 0 0 33.50 30.21 3.29 Eufind chr7 25 148683770 148683699 View Cys GCA taatgtaact agcattttaa 0 0 71.19 49.16 22.03 Both chr7 26 57257993 57257922 View Pseudo TTG gaccttacct aaataagagg 0 0 22.05 7.43 14.62 Eufind   chr7_random 1 397621 397697 View Lys TTT atacccatga tatttcgatc 0 0 68.40 47.33 21.07 Both   chr8 1 11830789 11830860 View Pseudo CTC gttctaggtc accaagaaat 0 0 26.22 24.57 1.65 Eufind chr8 2 18164483 18164552 View Pseudo TTT aggcacttga tcaatccctt 0 0 20.79 22.13 -1.34 Eufind chr8 3 59667352 59667422 View Glu CTC tgtttttctc ccaaaaaaat 0 0 33.87 25.11 8.76 Eufind chr8 4 67188156 67188248 View Tyr GTA cgtacacgtc gacaagtgcg 67188193 67188212 73.04 46.63 26.41 Both chr8 5 67188777 67188865 View Tyr GTA gtgcccgctc gagacacccc 67188814 67188829 69.69 43.28 26.41 Both chr8 6 67188978 67189050 View Ala AGC gcccagccgt gttttccttc 0 0 63.68 41.02 22.66 Both chr8 7 70234894 70234968 View Pseudo CTC gcctgatgct ggtataaagt 0 0 22.64 9.90 12.74 Eufind chr8 8 99222638 99222706 View Undet ??? acccgaagct tcccaggtgc 0 0 37.10 17.33 19.77 Eufind chr8 9 124339978 124339906 View Pseudo GAA tgagatgtca actttgtttt 0 0 20.84 22.72 -1.88 Eufind chr8 10 124238723 124238651 View Met CAT cttactaggt caataatttt 0 0 79.85 59.49 20.36 Both chr8 11 96351142 96351061 View Ser AGA cacacagcca ggaatgtcag 0 0 88.01 56.90 31.11 Both chr8 12 66772173 66772086 View Tyr GTA agtcctgccc acacctttgt 66772136 66772121 46.11 27.78 18.33 Both chr8 13 47859277 47859203 View Pseudo TAA aacagggttt atatgcctat 0 0 20.57 -5.33 25.90 tRNAscan chr8 14 32992259 32992188 View Pseudo TTG gaccttactc aaataagagg 0 0 22.66 9.08 13.58 Eufind   chr9 1 19393996 19394070 View Met CAT gagagggaac gctttgtgat 0 0 43.49 17.53 25.96 Eufind chr9 2 112000624 112000696 View Arg TCG ccaaccagct tggaggggtt 0 0 56.18 43.57 12.61 Both chr9 3 114656810 114656908 View Trp CCA tgcgttggtg tagcttgcac 114656849 114656872 23.38 12.52 10.86 Eufind chr9 4 130142266 130142176 View Arg TCT ttccgcagcc aattttgatg 130142229 130142212 67.17 46.72 20.45 Both chr9 5 125695415 125695343 View Gln CTG gtggcatgct cttactaaat 0 0 22.97 17.83 5.14 Eufind chr9 6 76707881 76707810 View Asp GTC aaaaaggcgg gctaataatg 0 0 54.95 37.92 17.03 Eufind chr9 7 14424009 14423938 View His GTG tcagtagctt ggaggggaga 0 0 64.63 37.18 27.45 Both chr9 8 5085156 5085085 View Gln TTG gaacttactt aaataagagg 0 0 21.75 10.04 11.71 Eufind   chrX 1 55223391 55223462 View Pseudo TTG gaccttactc aaataagagg 0 0 34.66 7.45 27.21 Eufind chrX 2 55224554 55224480 View Leu TAA aacagggttt atatacctat 0 0 28.07 14.24 13.83 Eufind chrX 3 51322923 51322852 View Pseudo CTC taagcttctc tgagtccttt 0 0 20.35 25.90 -5.55 Eufind chrX 4 18603022 18602950 View Val TAC tcctcgtaga tagccgtaag 0 0 85.12 60.08 25.04 Both chrX 5 3843344 3843271 View Ile GAT gccgtcgggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX 6 3804915 3804842 View Ile GAT gccgtcgggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX 7 3766491 3766418 View Ile GAT gccgtcaggc cggcgttagc 0 0 72.42 44.43 27.99 Both   chrX_random 1 118398 118471 View Ile GAT gccgtcgggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX_random 2 406943 407016 View Ile GAT gccgtcgggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX_random 3 465544 465617 View Ile GAT gccgtcaggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX_random 4 399021 398948 View Ile GAT gccgtcgggc cggcgttagc 0 0 72.42 44.43 27.99 Both chrX_random 5 86496 86423 View Ile GAT gccgtcaggc cggcgttagc 0 0 72.42 44.43 27.99 Both   chrY 1 8300214 8300140 View Pseudo TTG ctgaccttaa ataagaggat 0 0 27.14 2.00 25.14 Eufind

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.