tRNAscan-SE Analysis of the Helicobacter pylori J99 Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	93161	93252	View	Ser	GCT	0	0	69.60	35.63	33.97	Both
chr	2	341122	341198	View	Arg	GCG	0	0	69.51	43.88	25.63	Both
chr	3	852570	852646	View	Arg	CCT	0	0	82.70	63.28	19.42	Both
chr	4	974561	974636	View	Gly	GCC	0	0	75.95	58.52	17.43	Both
chr	5	974676	974762	View	Leu	TAA	0	0	69.17	44.28	24.89	Both
chr	6	974816	974890	View	Cys	GCA	0	0	69.98	45.32	24.66	Both
chr	7	974940	975027	View	Ser	TGA	0	0	71.62	42.90	28.72	Both
chr	8	1132400	1132476	View	Ile	GAT	0	0	90.80	65.86	24.94	Both
chr	9	1132494	1132569	View	Ala	TGC	0	0	92.67	74.51	18.16	Both
chr	10	1556051	1556126	View	Phe	GAA	0	0	84.96	60.10	24.86	Both
chr	11	1266295	1266209	View	Leu	GAG	0	0	57.27	22.46	34.81	Both
chr	12	1266155	1266069	View	Leu	CAA	0	0	76.32	46.07	30.25	Both
chr	13	1260735	1260660	View	Thr	TGT	0	0	96.71	76.06	20.65	Both
chr	14	1260632	1260548	View	Tyr	GTA	0	0	59.67	21.33	38.34	Both
chr	15	1260531	1260455	View	Gly	TCC	0	0	99.75	80.31	19.44	Both
chr	16	1260424	1260350	View	Thr	GGT	0	0	85.16	60.92	24.24	Both
chr	17	1258778	1258703	View	Trp	CCA	0	0	70.15	54.29	15.86	Both
chr	18	1230308	1230231	View	Met	CAT	0	0	82.06	68.17	13.89	Both
chr	19	1127608	1127524	View	Leu	TAG	0	0	79.22	51.65	27.57	Both
chr	20	1077152	1077075	View	Pro	TGG	0	0	92.94	69.94	23.00	Both
chr	21	1077008	1076932	View	His	GTG	0	0	77.54	61.99	15.55	Both
chr	22	1076872	1076796	View	Arg	TCG	0	0	79.58	65.63	13.95	Both
chr	23	1076774	1076698	View	Arg	TCT	0	0	92.26	75.66	16.60	Both
chr	24	915582	915508	View	Gln	TTG	0	0	72.57	45.34	27.23	Both
chr	25	915475	915399	View	Met	CAT	0	0	84.27	55.94	28.33	Both
chr	26	760112	760036	View	Met	CAT	0	0	85.21	62.78	22.43	Both
chr	27	442411	442334	View	Pro	GGG	0	0	66.35	40.44	25.91	Both
chr	28	391097	391010	View	Ser	GGA	0	0	70.08	38.07	32.01	Both
chr	29	258464	258389	View	Ala	GGC	0	0	83.42	59.35	24.07	Both
chr	30	235409	235335	View	Asn	GTT	0	0	73.96	43.61	30.35	Both
chr	31	75803	75728	View	Val	GAC	0	0	82.34	66.76	15.58	Both
chr	32	4616	4541	View	Lys	TTT	0	0	87.72	58.29	29.43	Both
chr	33	4528	4454	View	Glu	TTC	0	0	63.09	32.90	30.19	Both
chr	34	4416	4341	View	Val	TAC	0	0	92.56	63.65	28.91	Both
chr	35	4290	4214	View	Asp	GTC	0	0	91.95	76.81	15.14	Both
chr	36	4154	4079	View	Glu	TTC	0	0	52.89	18.29	34.60	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.