tRNAscan-SE Analysis of the Helicobacter pylori J99 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]
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Structurally Aligned tRNAs (by Isotype & Anticodon)
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTGTTAGCTCAGTTGGGAGAGCGCAACGCTGGCAGCGTTGAG...........GtCAGGGGTTCGAACCCCCTACACTCCACCA chr.trna29-AlaGGC Sc: 83.42  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATTCTCCACCA chr.trna9-AlaTGC Sc: 92.67  



Arg tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGCTCGTAGCTCAGCTGAAtAGAGCAACAGGTTGCGGTCCTGTAG...........GtCGGGGGTTTGAATCCCTCCGAGCACACCA chr.trna2-ArgGCG Sc: 69.51  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTTCGTAGCTCAATTGGAtAGAGCACCAGACTTCGGATCTGGGG...........GtTAGGGGTTCGACTCCCTTCGGGCGTACCA chr.trna22-ArgTCG Sc: 79.58  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCCTTGTAGCTCAGCTGGAtAGAGCGTATGATTCCTAATCGTAAG...........GtCGTGGGTTCGAATCCCGCCAAGGACACCA chr.trna3-ArgCCT Sc: 82.70  

>>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<....
GCGCTTGTAGCTCAGCTGGAtAGAGCAACAGCCTTCTAAGCCGTAG...........GtCGCAGGTTCGAGTCCTGCCAAGCGCACCA chr.trna23-ArgTCT Sc: 92.26  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCAGATTAGCTCAGCGGTA.GAGTAGGCGGCTGTTAACCGCTTG...........GtCGTAGGTTCCAATCCTACATCTGGAACCA chr.trna30-AsnGTT Sc: 73.96  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGCGGTAGTTCAGCTGGTtAGAATATCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr.trna35-AspGTC Sc: 91.95  



Cys tRNAs



>>>>>>>..>>>..........<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGCGACATAGCCAAGTGGTA.AGGCATGAGTCTGCAAAACTTTGA...........TcCCCCGGTTCGAATCCGGGTGTCGCCTCCA chr.trna6-CysGCA Sc: 69.98  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTGTCGCCAAGCGGTA.AGGCACCAGGTTTTGGTCCTGGCA...........TtCCGAGGTTCGAATCCTTGCACCCCAGCCA chr.trna24-GlnTTG Sc: 72.57  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCTCCTTCATCTAGTGGTt.A.GGATACCACCCTTTCACGGTGGTT...........ACAGGGGTTCAAATCCCCTAGGAGTCACCA chr.trna33-GluTTC Sc: 63.09  
GACCCTTTCATCTAGTGGCcaA.GGATACCACCCTTTCACGGTGGAA...........ACGGAAGTTCAAATCTTTCAAGGGTCGCCA chr.trna36-GluTTC Sc: 52.89  



Gly tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGT.GGTaG.AAGCACGACCTTGCCAAGGTCGGG...........GcCGCGGGTTCGATCCCCGTTTCCCGCTCCA chr.trna4-GlyGCC Sc: 75.95  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGCtA.GAGCATCAGCCTTCCAAGCTGAGG...........GtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA chr.trna15-GlyTCC Sc: 99.75  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGGAGTAGCTCAGTCGGTtAGAGCATCAGATTGTGGTCCTGAGG...........GtCGTGGGTTCGATTCCCATCTTCCACCCCA chr.trna21-HisGTG Sc: 77.54  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTATAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGAGGTTCAACTCCTCCTAAGCCCACCA chr.trna8-IleGAT Sc: 90.80  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCACTGGTGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGGGAGCAA...TCTCGTGCGAGTTCGAGTCTCGC.CCAGTGCACCA chr.trna11-LeuGAG Sc: 57.27  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGAAGTGGCGAAATTGGTaGACGCACTAGACTTAGGATCTAGCGCC.GCAA....GGCATGAAGGTTCGATTCCTTT.CTTCCGCACCA chr.trna19-LeuTAG Sc: 79.22  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGTGGAATTGGTaGACACGCTAGACTCAAAATCTGGTGGGAGCAA...TCCCGTGTCGGTTCGAGTCCGAC.CTTCGGCACCA chr.trna12-LeuCAA Sc: 76.32  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGTGGAATTGGTaGACACAAGGGACTTAAAATCCCTCGGTAGCAA...TACCGTGCCGGTTCAAGTCCGGC.TTTGGGCACCA chr.trna5-LeuTAA Sc: 69.17  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GACCCGTTAGCTCAGCTGGTAGAGCAATTCCCTTTTAAGGAATGG...........GcCGTTGGTTCAAATCCAACACGGGTCACCA chr.trna32-LysTTT Sc: 87.72  



Met tRNAs


>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGATTCTTAGCTCAGCT.GGTc.AGAGCGCTCGGCTCATAACCGATTG...........GtCGTAGGTTCAAGTCCTACAGAATCCACCA chr.trna26-MetCAT Sc: 85.21  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGAGTAGAGCAGTCcGGT..AGCTCGTTGGGCTCATAACCCAAAG...........GtCAGTGGTTCAAATCCATTCTCCGCAACCA chr.trna25-MetCAT Sc: 84.27  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCAAGGTAGCTCAGCT.GGTttAGAGCGCTGGTCTCATAAGCCGGAG...........GtCGGGGGTTCAAGTCCCCCTCTTGACACCA chr.trna18-MetCAT Sc: 82.06  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTTGATAGCTCAGTCGGTAGAGCAGAAGACTGAAAATCTTCGT...........GtCGGTGGTTCGATTCCGCCTCAAGCCACCA chr.trna10-PheGAA Sc: 84.96  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTATGGCGCAGCCtGATtAGCGCGCACCCTTGGGGTGGGTGAG...........GtCGTGGGTTTGAATCCCGCTACTCCGACCA chr.trna27-ProGGG Sc: 66.35  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGTCtGGTtAGCGCACTTGGTTTGGGACCAAGGG...........GtCGAAGGTTCGAATCCTTTCGCCCCGACCA chr.trna20-ProTGG Sc: 92.94  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>........<<<<...>>>>>.......<<<<<<<<<<<<....
GGGGAGATGTCCGAGT.GGTtgA.AGGAGCACGCCTGGAACGCGTGTAAGGT.GCAA...GCCTT.CGAGGGTTCGAATCCCTCTCTCTCCGCCA chr.trna28-SerGGA Sc: 70.08  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>..........<<<...>>>>>.......<<<<<<<<<<<<....
CGGGAGATGGCTGAGT.GGTtgA.AAGCGGCGGTCTTGAAAACCGTTGAGGG.TCAT...ACCTC.CGGGGGTTCGAATCCCTCTCTCCCGGCCA chr.trna7-SerTGA Sc: 71.62  


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>.>........<.<....>>>>>.......<<<<<<<<<<<<....
GGACAGGTGGGTGAGTTGGCtgA.AACCACATCCCTGCTAAGGATGCGTAGCCGTCA..AGGTTAcCGAGGGTTCGAATCCCTCCCTGTCCGCCA chr.trna1-SerGCT Sc: 69.60  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTATATAGCTCAGA.GGCA.GAGCACTTCCTTGGTAAGGAAGAG...........GtCGGCGGTTCAATTCCGCTTATAGGCTCCA chr.trna16-ThrGGT Sc: 85.16  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGCTTAGCTCAGTTGGTA.GAGCAGCTGCCTTGTAAGCAGCAG...........GtCGGGGGTTCAAGTCCCTTAGCCAGCTCCA chr.trna13-ThrTGT Sc: 96.71  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGTCAGTAGCTCCAATGGTAGAGCGTCGGTCTCCAAAACCGGTT...........GtTGGGGGTTCGAGTCCCTCCTGGCCTGCCA chr.trna17-TrpCCA Sc: 70.15  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>.......<<.....>>>>>.......<<<<<<<<<<<<....
GGTGAGATACTCAAGTGGCcaA.CGAGGGCAGACTGTAAATCTGCTGACTA.......TGTCTtCCGTGGTTCGAATCCACGTCTCACCACCA chr.trna14-TyrGTA Sc: 59.67  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCGCGTAGCTCAGTTGGTAGAGCACTACCTTGACATGGTAGTG...........GcCGCTGGTTCAAGTCCAGTCGTGGCCACCA chr.trna31-ValGAC Sc: 82.34  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCGCTTAGCTCAGTTGGTAGAGCGCTACCCTTACAAGGTAGAT...........GtCATAAGTTCGAGTCTTATAGCGACCACCA chr.trna34-ValTAC Sc: 92.56
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.