tRNAscan-SE Analysis of the Helicobacter pylori 26695 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna29 (261560-261485)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (261527-261525)	Score: 82.56
Seq: GGGGTGTTAGCTCAGCTGGGAGAGCGCAACGCTGGCAGCGTTGAGGtCAGGGGTTCGAACCCCCTACACTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (369954-369879)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (369921-369919)	Score: 92.14
Seq: GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (887942-888018)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (887976-887978)	Score: 82.70
Seq: GTCCTTGTAGCTCAGCTGGAtAGAGCGTATGATTCCTAATCGTAAGGtCGTGGGTTCGAATCCCGCCAAGGACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (345390-345466)	Length: 77 bp
Type: Arg	Anticodon: GCG at 35-37 (345424-345426)	Score: 69.51
Seq: GTGCTCGTAGCTCAGCTGAAtAGAGCAACAGGTTGCGGTCCTGTAGGtCGGGGGTTTGAATCCCTCCGAGCACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (424953-425029)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (424987-424989)	Score: 79.58
Seq: GCGTTCGTAGCTCAATTGGAtAGAGCACCAGACTTCGGATCTGGGGGtTAGGGGTTCGACTCCCTTCGGGCGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (425052-425128)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (425086-425088)	Score: 92.26
Seq: GCGCTTGTAGCTCAGCTGGAtAGAGCAACAGCCTTCTAAGCCGTAGGtCGCAGGTTCGAGTCCTGCCAAGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (238578-238504)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (238546-238544)	Score: 79.87
Seq: TCCAGATTAGCTCAGCGGTAGAGTAGGCGGCTGTTAACCGCTTGGtCGTAGGTTCGAATCCTACATCTGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (4461-4385)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (4427-4425)	Score: 91.95
Seq: GGAGCGGTAGTTCAGCTGGTtAGAATATCTGCCTGTCACGCAGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (1006326-1006400)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (1006358-1006360)	Score: 75.44
Seq: GGCGACATAGCCAAGTGGTAAGGCATGGGTCTGCAAAACCTTGATtCCCCGGTTCGAATCCGGGTGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna24 (950066-949992)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (950034-950032)	Score: 72.57
Seq: TGGGGTGTCGCCAAGCGGTAAGGCACCAGGTTTTGGTCCTGGCATtCCGAGGTTCGAATCCTTGCACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (4322-4247)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (4288-4286)	Score: 52.89
Seq: GACCCTTTCATCTAGTGGCcaAGGATACCACCCTTTCACGGTGGAAACGGAAGTTCAAATCTTTCAAGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (4693-4619)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (4660-4658)	Score: 63.09
Seq: GGCTCCTTCATCTAGTGGTtAGGATACCACCCTTTCACGGTGGTTACAGGGGTTCAAATCCCCTAGGAGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (1005696-1005770)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1005728-1005730)	Score: 85.93
Seq: GCGGGAATAGCTCAGTGGTAGAGCACGACCTTGCCAAGGTCGGGGcCGCGGGTTCGATCCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1282186-1282110)	Length: 77 bp
Type: Gly	Anticodon: TCC at 35-37 (1282152-1282150)	Score: 99.75
Seq: GCGGGAATAGCTCAGTTGGCtAGAGCATCAGCCTTCCAAGCTGAGGGtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (424819-424895)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (424853-424855)	Score: 77.54
Seq: GTGGGAGTAGCTCAGTCGGTtAGAGCATCAGATTGTGGTCCTGAGGGtCGTGGGTTCGATTCCCATCTTCCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (370045-369969)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (370011-370009)	Score: 90.80
Seq: GGGCTTATAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGAGGTTCAACTCCTCCTAAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1287873-1287787)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (1287839-1287837)	Score: 76.32
Seq: GCCGAAGTGGTGGAATTGGTaGACACGCTAGACTCAAAATCTGGTGGGAGCAATCCCGTGTCGGTTCGAGTCCGACCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1288015-1287929)	Length: 87 bp
Type: Leu	Anticodon: GAG at 35-37 (1287981-1287979)	Score: 57.27
Seq: GCACTGGTGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGGGAGCAATCTCGTGCGAGTTCGAGTCTCGCCCAGTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna10 (1006166-1006252)	Length: 87 bp
Type: Leu	Anticodon: TAA at 35-37 (1006200-1006202)	Score: 69.17
Seq: GCCCAGGTGGTGGAATTGGTaGACACAAGGGACTTAAAATCCCTCGGTAGCAATACCGTGCCGGTTCAAGTCCGGCTTTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna3 (374829-374913)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (374863-374865)	Score: 79.22
Seq: GCGGAAGTGGCGAAATTGGTaGACGCACTAGACTTAGGATCTAGCGCCGCAAGGCATGAAGGTTCGATTCCTTTCTTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna32 (4779-4704)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (4746-4744)	Score: 87.72
Seq: GACCCGTTAGCTCAGCTGGTAGAGCAATTCCCTTTTAAGGAATGGGcCGTTGGTTCAAATCCAACACGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1249354-1249277)	Length: 78 bp
Type: Met	Anticodon: CAT at 36-38 (1249319-1249317)	Score: 82.06
Seq: GTCAAGGTAGCTCAGCTGGTttAGAGCGCTGGTCTCATAAGCCGGAGGtCGGGGGTTCAAGTCCCCCTCTTGACACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (949973-949897)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (949939-949937)	Score: 84.27
Seq: CGCGGAGTAGAGCAGTCcGGTAGCTCGTTGGGCTCATAACCCAAAGGtCAGTGGTTCAAATCCATTCTCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna26 (797829-797753)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (797795-797793)	Score: 85.74
Seq: GGATTCTTAGCTCAGCTGGTcAGAGCACTCGGCTCATAACCGATTGGtCGTAGGTTCAAGTCCTACAGAATCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1605878-1605953)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (1605911-1605913)	Score: 84.96
Seq: GGCTTGATAGCTCAGTCGGTAGAGCAGAAGACTGAAAATCTTCGTGtCGGTGGTTCGATTCCGCCTCAAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (1072258-1072335)	Length: 78 bp
Type: Pro	Anticodon: GGG at 36-38 (1072293-1072295)	Score: 66.35
Seq: CGGAGTATGGCGCAGCCtGATtAGCGCGCACCCTTGGGGTGGGTGAGGtCGTGGGTTTGAATCCCGCTACTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (424676-424753)	Length: 78 bp
Type: Pro	Anticodon: TGG at 36-38 (424711-424713)	Score: 92.94
Seq: CGGGGCGTAGCGCAGTCtGGTtAGCGCACTTGGTTTGGGACCAAGGGGtCGAAGGTTCGAATCCTTTCGCCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (96959-97050)	Length: 92 bp
Type: Ser	Anticodon: GCT at 36-38 (96994-96996)	Score: 69.60
Seq: GGACAGGTGGGTGAGTTGGCtgAAACCACATCCCTGCTAAGGATGCGTAGCCGTCAAGGTTAcCGAGGGTTCGAATCCCTCCCTGTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>.>......<.<....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (1125286-1125373)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (1125320-1125322)	Score: 70.08
Seq: GGGGAGATGTCCGAGTGGTtgAAGGAGCACGCCTGGAACGCGTGTAAGGTGCAAGCCTTCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna12 (1006448-1006535)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (1006482-1006484)	Score: 71.62
Seq: CGGGAGATGGCTGAGTGGTtgAAAGCGGCGGTCTTGAAAACCGTTGAGGGTCATACCTCCGGGGGTTCGAATCCCTCTCTCCCGGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1282079-1282005)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (1282047-1282045)	Score: 85.16
Seq: GCCTATATAGCTCAGAGGCAGAGCACTTCCTTGGTAAGGAAGAGGtCGGCGGTTCAATTCCGCTTATAGGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (1282389-1282314)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (1282356-1282354)	Score: 96.71
Seq: GCTGGCTTAGCTCAGTTGGTAGAGCAGCTGCCTTGTAAGCAGCAGGtCGGGGGTTCAAGTCCCTTAGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1280445-1280370)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (1280412-1280410)	Score: 70.15
Seq: AGGTCAGTAGCTCCAATGGTAGAGCGTCGGTCTCCAAAACCGGTTGtTGGGGGTTCGAGTCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1282286-1282202)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (1282252-1282250)	Score: 59.67
Seq: GGTGAGATACTCAAGTGGCcaACGAGGGCAGACTGTAAATCTGCTGACTATGTCTtCCGTGGTTCGAATCCACGTCTCACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>><<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (78281-78206)	Length: 76 bp
Type: Val	Anticodon: GAC at 34-36 (78248-78246)	Score: 82.34
Seq: GGTCGCGTAGCTCAGTTGGTAGAGCACTACCTTGACATGGTAGTGGcCGCTGGTTCAAGTCCAGTCGTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (4577-4502)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (4544-4542)	Score: 92.56
Seq: GGTCGCTTAGCTCAGTTGGTAGAGCGCTACCCTTACAAGGTAGATGtCATAAGTTCGAGTCTTATAGCGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.