tRNAscan-SE Analysis of the Helicobacter pylori 26695 Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	29	261560	261485	View	Ala	GGC	0	0	82.56	58.49	24.07	Both

chr	28	369954	369879	View	Ala	TGC	0	0	92.14	73.97	18.17	Both

chr	8	887942	888018	View	Arg	CCT	0	0	82.70	63.28	19.42	Both

chr	2	345390	345466	View	Arg	GCG	0	0	69.51	43.88	25.63	Both

chr	6	424953	425029	View	Arg	TCG	0	0	79.58	65.63	13.95	Both

chr	7	425052	425128	View	Arg	TCT	0	0	92.26	75.66	16.60	Both

chr	30	238578	238504	View	Asn	GTT	0	0	79.87	49.55	30.32	Both

chr	35	4461	4385	View	Asp	GTC	0	0	91.95	76.81	15.14	Both

chr	11	1006326	1006400	View	Cys	GCA	0	0	75.44	51.60	23.84	Both

chr	24	950066	949992	View	Gln	TTG	0	0	72.57	45.34	27.23	Both

chr	36	4322	4247	View	Glu	TTC	0	0	52.89	18.29	34.60	Both
chr	33	4693	4619	View	Glu	TTC	0	0	63.09	32.90	30.19	Both

chr	9	1005696	1005770	View	Gly	GCC	0	0	85.93	63.37	22.56	Both

chr	20	1282186	1282110	View	Gly	TCC	0	0	99.75	80.31	19.44	Both

chr	5	424819	424895	View	His	GTG	0	0	77.54	61.99	15.55	Both

chr	27	370045	369969	View	Ile	GAT	0	0	90.80	65.86	24.94	Both

chr	17	1287873	1287787	View	Leu	CAA	0	0	76.32	46.07	30.25	Both

chr	16	1288015	1287929	View	Leu	GAG	0	0	57.27	22.46	34.81	Both

chr	10	1006166	1006252	View	Leu	TAA	0	0	69.17	44.28	24.89	Both

chr	3	374829	374913	View	Leu	TAG	0	0	79.22	51.65	27.57	Both

chr	32	4779	4704	View	Lys	TTT	0	0	87.72	58.29	29.43	Both

chr	23	1249354	1249277	View	Met	CAT	0	0	82.06	68.17	13.89	Both
chr	25	949973	949897	View	Met	CAT	0	0	84.27	55.94	28.33	Both
chr	26	797829	797753	View	Met	CAT	0	0	85.74	63.31	22.43	Both

chr	15	1605878	1605953	View	Phe	GAA	0	0	84.96	60.10	24.86	Both

chr	13	1072258	1072335	View	Pro	GGG	0	0	66.35	40.44	25.91	Both

chr	4	424676	424753	View	Pro	TGG	0	0	92.94	69.94	23.00	Both

chr	1	96959	97050	View	Ser	GCT	0	0	69.60	35.63	33.97	Both

chr	14	1125286	1125373	View	Ser	GGA	0	0	70.08	38.07	32.01	Both

chr	12	1006448	1006535	View	Ser	TGA	0	0	71.62	42.90	28.72	Both

chr	21	1282079	1282005	View	Thr	GGT	0	0	85.16	60.92	24.24	Both

chr	18	1282389	1282314	View	Thr	TGT	0	0	96.71	76.06	20.65	Both

chr	22	1280445	1280370	View	Trp	CCA	0	0	70.15	54.29	15.86	Both

chr	19	1282286	1282202	View	Tyr	GTA	0	0	59.67	21.33	38.34	Both

chr	31	78281	78206	View	Val	GAC	0	0	82.34	66.76	15.58	Both

chr	34	4577	4502	View	Val	TAC	0	0	92.56	63.65	28.91	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.