tRNAscan-SE Analysis of the Helicobacter hepaticus Genome

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	13	1546239	1546314	View	Ala	GGC	0	0	83.42	59.35	24.07	Both

chr	19	956593	956518	View	Ala	TGC	0	0	92.14	73.97	18.17	Both

chr	9	478741	478817	View	Arg	CCT	0	0	82.97	52.18	30.79	Both

chr	10	753860	753936	View	Arg	GCG	0	0	68.00	42.39	25.61	Both

chr	3	37039	37115	View	Arg	TCG	0	0	78.06	64.14	13.92	Both

chr	7	202750	202826	View	Arg	TCT	0	0	91.58	72.45	19.13	Both

chr	8	438133	438207	View	Asn	GTT	0	0	84.95	59.11	25.84	Both

chr	24	891491	891415	View	Asp	GTC	0	0	94.25	75.80	18.45	Both

chr	31	362655	362581	View	Cys	GCA	0	0	74.84	51.76	23.08	Both

chr	5	202423	202497	View	Gln	TTG	0	0	74.17	49.78	24.39	Both

chr	22	891709	891635	View	Glu	TTC	0	0	65.47	37.43	28.04	Both

chr	29	362963	362889	View	Gly	GCC	0	0	88.04	67.37	20.67	Both

chr	35	361073	360997	View	Gly	TCC	0	0	97.38	77.94	19.44	Both

chr	2	36945	37021	View	His	GTG	0	0	77.19	64.62	12.57	Both

chr	18	956712	956636	View	Ile	GAT	0	0	94.06	69.13	24.93	Both

chr	28	571617	571531	View	Leu	CAA	0	0	72.58	46.72	25.86	Both

chr	27	571757	571673	View	Leu	GAG	0	0	55.92	25.50	30.42	Both

chr	30	362812	362725	View	Leu	TAA	0	0	65.86	48.30	17.56	Both

chr	26	585298	585214	View	Leu	TAG	0	0	81.93	55.74	26.19	Both

chr	11	871458	871533	View	Lys	CTT	0	0	91.05	67.45	23.60	Both

chr	21	891799	891724	View	Lys	TTT	0	0	89.70	60.27	29.43	Both

chr	20	937936	937859	View	Met	CAT	0	0	85.54	68.55	16.99	Both
chr	6	202580	202656	View	Met	CAT	0	0	86.14	59.42	26.72	Both
chr	25	758332	758256	View	Met	CAT	0	0	91.86	74.52	17.34	Both

chr	17	1128081	1128006	View	Phe	GAA	0	0	86.53	62.92	23.61	Both

chr	4	138302	138379	View	Pro	GGG	0	0	67.71	41.80	25.91	Both

chr	1	36848	36925	View	Pro	TGG	0	0	92.94	69.94	23.00	Both

chr	12	899541	899617	View	Pseudo	TTC	0	0	45.59	9.70	35.89	tRNAscan

chr	16	1243580	1243490	View	Ser	GCT	0	0	72.15	37.77	34.38	Both

chr	15	1422525	1422438	View	Ser	GGA	0	0	65.33	29.09	36.24	Both

chr	32	362546	362459	View	Ser	TGA	0	0	71.30	42.59	28.71	Both

chr	36	360937	360863	View	Thr	GGT	0	0	87.32	64.40	22.92	Both

chr	33	361349	361274	View	Thr	TGT	0	0	97.73	77.98	19.75	Both

chr	37	359378	359303	View	Trp	CCA	0	0	75.76	51.57	24.19	Both

chr	34	361219	361135	View	Tyr	GTA	0	0	61.75	25.49	36.26	Both

chr	14	1704004	1703929	View	Val	GAC	0	0	86.92	71.34	15.58	Both

chr	23	891596	891521	View	Val	TAC	0	0	93.87	66.19	27.68	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.