Genomic tRNA Database: Halobacterium salinarum R1

tRNAscan-SE Analysis of Halobacterium salinarum R1

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>> FASTA Seqs

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>> Genome Seq

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna24 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 76.68
Seq: GGGCTCGTAGATCAGCGGTAGATCGCTTCCTTCGCAAGGAAGAGGcCCTGGGTTCAAATCCCAGCGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 76.68
Seq: GGGCTCGTAGATCAGCGGTAGATCGCTTCCTTCGCAAGGAAGAGGcCCTGGGTTCAAATCCCAGCGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (1-72)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 70.00
Seq: GGGCTCGTAGATCAGTGGTAGATCATCCCCCTGGCACGGGGAAGGcCTCGGGTTCAAATCCCGACGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (1-72)	Length: 72 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 79.40
Seq: GGGCCCATAGCTCAGTGGTAGAGTGCCTCCTTTGCAAGGAGGATGcCCTGGGTTCGAATCCCAGTGGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (1-73)	Length: 73 bp
Type: Arg	Anticodon: CCG at 34-36 (34-36)	Score: 70.66
Seq: GGGCGCGTAGCTCAGCGGAcAGAGCACTTGGTTCCGGACCAAGATGtCAGGGGTTCAAATCCCTTCGCGCCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna43 (1-73)	Length: 73 bp
Type: Arg	Anticodon: CCT at 34-36 (34-36)	Score: 66.43
Seq: GGGCGTGTGGCCAAGCGGAcACGGCGAGAGGTTCCTAACCTCTAGAtCGCGGGTTCGAGTCCCGCCACGCCCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna45 (1-73)	Length: 73 bp
Type: Arg	Anticodon: GCG at 35-37 (35-37)	Score: 50.23
Seq: GTCCGGATAGGGTAGTGGActATCCTCTTGGCTTGCGGAGCCAGGGACCGGCGTTCAAATCGCCGTCCGGACG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 72.48
Seq: GGGCGCTTAGCTCAGCTtGGAcAGAGCACTTGGCTTCGGACCAAGATGcCGCGGGTTCAAATCCTGCAGCGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 73.82
Seq: GGGCGCGTAGCTCAGTCcGGAcAGAGCGTTCGGCTTCTAACCGAAATGtCGGGGGTTCGAATCCCCTCGTGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna1 (1-73)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (34-36)	Score: 63.25
Seq: GCCGCCATAGCTCAGTTGGTAGAGCACGTGGTTGTTACCCACGTTGtCCCAGGTTCGAGCCCTGGTGGCGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna25 (1-73)	Length: 73 bp
Type: Asp	Anticodon: GTC at 35-37 (35-37)	Score: 67.24
Seq: GCCCGGATGGTGTAGTGGCccATCATACAACCCTGTCACGGTTGTGACGCGGGTTCAAATCCCGCTCCGGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (1-76)	Length: 76 bp
Type: Cys	Anticodon: GCA at 37-39 (37-39)	Score: 69.09
Seq: GCCAAGGTGGCAGAGTTcGGCctAACGCGGCGGCCTGCAGAGCCGCTCAtCGCCGGTTCAAATCCGGCCCTTGGCT
Str: >>>>>>>..>>...............<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (1-73)	Length: 73 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 50.49
Seq: AGTCCCGTAGGGTAGTGGCcaATCCTGAAGCCTTCTGGGGGCTTCGACGGAAGTTCGAATCTTCCCGGGACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna5 (1-73)	Length: 73 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 61.86
Seq: AGTCCCGTGGTGTAGTGGCcaATCATATGGGCCTTTGGAGCCCACGACGGCGGTTCGAATCCGCCCGGGACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna39 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 59.86
Seq: GCTCCGTTGGTGTAGTCcGGCcaATCATCTTGCCCTCTCACGGCAAGGACTAGGGTTCAAATCCCTGACGGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (1-75)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 68.73
Seq: GCTCGGTTGGTGTAGTCcGGCcaATCATGTTGGCCTTTCGAGCCGACGACCAGGGTTCAAATCCCTGACCGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna31 (1-71)	Length: 71 bp
Type: Gly	Anticodon: CCC at 33-35 (33-35)	Score: 65.26
Seq: GCGCTGGTGGTCTAGTGGTAGGACATGAGCTTCCCAAGCTCATAGCCCGGGTTCAATTCCCGGCCAGCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna33 (1-71)	Length: 71 bp
Type: Gly	Anticodon: GCC at 33-35 (33-35)	Score: 62.22
Seq: GCGCTGGTAGTGTAGTGGTATCACGTGACCTTGCCATGGTCACAACCTGGGTTCAAATCCCAGCCAGCGCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna42 (1-71)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (33-35)	Score: 72.10
Seq: GCGCCGGTAGTCTAGTGGTAGGACCTGAGCCTTCCAAGCTCATGGCCCGGGTTCAAATCCCGGTCGGCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (1-73)	Length: 73 bp
Type: His	Anticodon: GTG at 35-37 (35-37)	Score: 46.60
Seq: TCCGGGGTAGGGTAGTGGActATCCTTCAGCCTTGTGGAGGCTGAGACGCGGGTTCGATTCTCGCCCCTGGAC
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (1-74)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (35-37)	Score: 59.84
Seq: GGGTCAGTAGCTCAACTaGGTAGAGCGCCACTCTGATAAGGTGGAGGcTTGCGGTTCAAATCCGCACTGACCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna38 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAA at 37-39 (37-39)	Score: 69.43
Seq: GCGAGGGTAGCCAAGCTcGGCcaACGGCGACGGACTCAAGATCCGTTCTCGTAGGAGTtCGAGGGTTCGAATCCCTTCCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna12 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 64.42
Seq: GCAGGGATAGCCAAGTTtGGCcaAAGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTtCGCAGGTTCAAATCCTGCTCCCTGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna36 (1-85)	Length: 85 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 64.85
Seq: GCGTGGGTAGCCGAGCTaGGTcaAAGGCGCAGCGTTGAGGGCGCTGTCCTGTAGAGGTtCGCCGGTTCGAATCCGGTCCCACGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna17 (1-83)	Length: 83 bp
Type: Leu	Anticodon: TAA at 35-37 (35-37)	Score: 69.84
Seq: GCGAGGGTGGCCGAGCGGCcaAAGGCGGCGGGCTTAAGACCCGCTCCCGTAGGGGTtCGTGGGTTCGAATCCCACCTCTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna37 (1-84)	Length: 84 bp
Type: Leu	Anticodon: TAG at 36-38 (36-38)	Score: 71.46
Seq: GCGCGGGTAGCCAAGCCaGGAaACGGCGTAGCGCTTAGGACGCTATCCCGTAGGGGTcCGCCGGTTCAAATCCGGTCCCGCGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna8 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 86.03
Seq: GGGCCGGTAGCTCAGTCtGGCAGAGCGACGGACTCTTAATCCGTCGGtCGCGTGTTCAAATCGCGCCCGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna27 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 85.16
Seq: GGGCCGATAGCTCAGCCcGGCAGAGCGTCTGGCTTTTAACCAGACGGtCGAGGGTTCAAATCCCTCTCGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna44 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 63.10
Seq: AGCGGGATGGGATAGCCaGGAgATTCCGCCGGGCTCATAACCCGGAGAtCGGTAGTTCAAATCTACCTCCCGCTA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna2 (1-109)	Length: 109 bp
Type: Met	Anticodon: CAT at 37-39 (37-39)	Score: 60.74
Possible intron: 41-73 (41-73)
Seq: GGGCCCTTAGCTTAGTCcGGTtcAAAGCCCCCGGCTCATAtcagtgccgtcgcatgcggcggcgctgtgggacACCGGGTGAgCGGTGGTTCAAATCCGCCAGGGCCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>........................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna34 (1-133)	Length: 133 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 65.69
Possible intron: 39-97 (39-97)
Seq: GCCCGGGTGGCTTAGCTGGTcATAGCGCCGCACTCATAgggtatcgagcttcgggctcagcatgtccgcgaggcccgccgagcctcgaacctgggacATGCGGAGAtCGAGGGTTCAAAACCCTCCCCGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>..................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
BHB: GCCCGGGTGGCTTAGCTGGTCATAGCGCCGCACTCATAGGGTATCGAGCTTCGG[TGCGGCATCCCACTGCCACGTGGAT]GCTCAGCATGTCCGCGAGGCCCGCCGAGCCTCGAACCTGGGACATGCGGAGATCGAGGGTTCAAAACCCTCCCCGGGCA

chr.trna47 (1-74)	Length: 74 bp
Type: Phe	Anticodon: GAA at 35-37 (35-37)	Score: 74.29
Seq: GCCGCCTTAGCTCAGACtGGGAGAGCACTCGACTGAAGATCGAGCTGtCCCTGGTTCAAATCCGGGAGGCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna32 (1-73)	Length: 73 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 59.60
Seq: GGGCCGGTGGGGTAGCTtGGTATCCTTCGGCCTTCGGGTGGCCGTAACCGCGATTCGAATTCGCGCCGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (1-71)	Length: 71 bp
Type: Pro	Anticodon: GGG at 33-35 (33-35)	Score: 47.58
Seq: GGGACCGTGGGGTAGCGGTATCCTCGGCGCATGGGGTGCGTCGGACTCGAGTTCGAATCTCGACGGTCCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna20 (1-73)	Length: 73 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 63.72
Seq: GGGACTGTAGGGTAGCTtGGTATCCTTCGGGCCTTGGGTGCCCGTGACCCCGATTCAAATTCGGGCGGTCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (1-85)	Length: 85 bp
Type: Ser	Anticodon: CGA at 36-38 (36-38)	Score: 62.46
Seq: GCCGAGGTAGCCTAGCCtGGCcAAGGCGGTTGCTTCGAGAGCAACTGTCCACACGGACtCAGGAGTTCAAATCTCCTCCTCGGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna11 (1-83)	Length: 83 bp
Type: Ser	Anticodon: GCT at 36-38 (36-38)	Score: 69.78
Seq: GTCGTGGTAGCCTAGCCtGGTcAAGGCGCAGGGTTGCTAACTCTGTGGCGTAAGCCTCCGGGGTTCAAATCCCCGCCACGACG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna30 (1-82)	Length: 82 bp
Type: Ser	Anticodon: GGA at 33-35 (33-35)	Score: 56.38
Seq: GCCGGGATGGCCGAATGGCAAAGCGCACGCCTGGAAAGCGTGTCCCCTTACGGGGtTCAGGGTTCAAATCCCTGTCCCGGCG
Str: >>>>>>>..>>...........<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna40 (1-83)	Length: 83 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 58.38
Seq: GGTGAGGTGGCAGAGCGGCctATTGCGCCGGTCTTGAAAACCGGTGGCGTCAcGCCTCCTGGGTTCGAATCCCAGCCTCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna10 (1-72)	Length: 72 bp
Type: Thr	Anticodon: CGT at 33-35 (33-35)	Score: 74.36
Seq: GCCGGTGTAGCTCAGCGGTAGAGCGATTCCTTCGTAAGGAATAGGcCGAGGGTTCAAATCCCTCCACCGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (1-72)	Length: 72 bp
Type: Thr	Anticodon: GGT at 33-35 (33-35)	Score: 65.68
Seq: GCCTGGGTAGCTTAGCGGTAAAGCGCGTCCTTGGTAAGGACGAGAcCCCGGATTCAAATTCCGGCCTAGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna41 (1-74)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (35-37)	Score: 50.88
Seq: GCCAAGGGAGCTTggGTGGTccAAGCACTCGATTTGTAATCGAGAGTtCGTGGGTTCAAATCCCACCCTTGGCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (1-176)	Length: 176 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 56.31
Possible intron: 39-140 (39-140)
Seq: GGGGCTGTGGCCAAGCCaGGCATGGCGACTGACTCCAGaggcccgcgcccgggacgacgctccagactggtataccgagcggccgactgatcatcggtccgctgtgacgaccctctggagttccgaggcgcaccggagatATCAGTCGAtCGGGGGTTCAAATCCCTCCGGCCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.............................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (1-74)	Length: 74 bp
Type: Tyr	Anticodon: GTA at 35-37 (35-37)	Score: 64.55
Seq: CCGCCCTTAGCTCAGACtGGTAGAGCAGTCGACTGTAGATCGACTTGcCCCCCGTTCAAATCGGGGAGGGCGGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna35 (1-75)	Length: 75 bp
Type: Val	Anticodon: CAC at 36-38 (36-38)	Score: 70.04
Seq: GGGTCGGTGGTCTAGTCcGGTtATGACGGCTCCTTCACACGGAGCAGGtCGGCGGTTCAACTCCGCCCCGACCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (1-75)	Length: 75 bp
Type: Val	Anticodon: GAC at 36-38 (36-38)	Score: 69.70
Seq: GGGTTGGTGGTCTAGTCaGGCtATGACACCTCCTTGACATGGAGGAGGtCGGCGGTTCAAATCCGCCCCAACCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna46 (1-74)	Length: 74 bp
Type: Val	Anticodon: TAC at 35-37 (35-37)	Score: 74.98
Seq: GGGTTCGTGGTCTAGTCGGTcATGACGCGGCCTTTACAAGGCCGAGGtCGGTGGTTCGAATCCGCCCGAACCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.