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tRNAscan-SE Analysis of Halobacterium salinarum R1

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tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 1 114783 114855 View Asn GTT tagggtgcga tcacttcctc 0 0 63.25 43.31 19.94   chr 2 114945 115053 View Met CAT catcgccagc tccatttcct 114985 115017 60.74 43.24 17.50   chr 3 167477 167550 View Tyr GTA acgagtgcgt tttcctcacc 0 0 64.55 31.75 32.80   chr 4 181259 181343 View Ser CGA tatcgaacga cttctcggac 0 0 62.46 30.16 32.30   chr 5 400936 401008 View Gln TTG ccgcgagtgc ctcaccgatc 0 0 61.86 35.02 26.84   chr 6 455189 455263 View Arg TCG gtgggacgca ctcgattcct 0 0 72.48 55.42 17.06   chr 7 585273 585344 View Ala GGC atgcgttcgc ctcccgttcc 0 0 70.00 45.97 24.03   chr 8 739041 739114 View Lys CTT ggatgcgttc ctttctgaac 0 0 86.03 68.75 17.28   chr 9 763036 763211 View Trp CCA tggaatgcac tacccttact 763074 763175 56.31 40.91 15.40   chr 10 844946 845017 View Thr CGT gtcgcggcgc tcaggaagtc 0 0 74.36 50.46 23.90   chr 11 852160 852242 View Ser GCT tcgaaagcct cctttcacag 0 0 69.78 53.17 16.61   chr 12 854562 854646 View Leu CAG acgcgaccga ttcgacttct 0 0 64.42 39.68 24.74   chr 13 974980 975054 View Glu TTC ggatgcggac tttcttgcgg 0 0 68.73 46.69 22.04   chr 14 1219519 1219593 View Val GAC gatgacgcga ttcacgccgc 0 0 69.70 46.52 23.18   chr 15 1268469 1268539 View Pro GGG acccagatac ctcaaaataa 0 0 47.58 22.15 25.43   chr 16 1401930 1402003 View Ile GAT cgaagtgcgc ctagcggttc 0 0 59.84 35.26 24.58   chr 17 1406550 1406632 View Leu TAA ctacggagat ctcgttttgc 0 0 69.84 48.72 21.12   chr 18 1490893 1490964 View Thr GGT cgtaatgcgt tttcctgcgg 0 0 65.68 44.64 21.04   chr 19 1585878 1585950 View His GTG ggatgcagtg cttttcgcga 0 0 46.60 25.17 21.43   chr 20 1596559 1596631 View Pro TGG gtggtgatac tactgtttaa 0 0 63.72 38.80 24.92   chr 21 1865200 1865271 View Ala TGC atcgggaggt tcccgttcgg 0 0 79.40 63.18 16.22   chr 22 1868872 1868947 View Cys GCA gtagtcgtgt tttcagcagc 0 0 69.09 45.69 23.40   chr 23 1905479 1905551 View Arg CCG gtgcacgtgt tgttctgcgt 0 0 70.66 53.60 17.06   chr 24 1914848 1914919 View Ala CGC accagtatgc tccttctccc 0 0 76.68 53.42 23.26   chr 25 1990583 1990655 View Asp GTC agtgcagcca ctttctccgt 0 0 67.24 45.17 22.07   chr 26 1972429 1972358 View Ala CGC gcgcggtcgc ctcctgtatt 0 0 76.68 53.42 23.26   chr 27 1870253 1870180 View Lys TTT gtgtactcgt ttcgaccgct 0 0 85.16 67.69 17.47   chr 28 1826892 1826818 View Arg TCT tgccggatgc tggcgtcggc 0 0 73.82 58.33 15.49   chr 29 1765201 1765129 View Gln CTG gcagccacgc cttctggcgt 0 0 50.49 14.75 35.74   chr 30 1531342 1531261 View Ser GGA ggaggactgg tttctcgcga 0 0 56.38 33.71 22.67   chr 31 1488514 1488444 View Gly CCC agcgcggcgc tccttcacgc 0 0 65.26 46.28 18.98   chr 32 1450448 1450376 View Pro CGG tctcacgtgc ctacacactt 0 0 59.60 33.24 26.36   chr 33 1247169 1247099 View Gly GCC aatgcgaagg tttctcaccg 0 0 62.22 37.99 24.23   chr 34 1209317 1209160 View Met CAT ggcaagacga ctcctgcgat 78 136 65.69 49.89 15.80   chr 35 1147215 1147141 View Val CAC actactgtcc ttacttcgct 0 0 70.04 45.96 24.08   chr 36 1100932 1100848 View Leu GAG ccgtacgcga tcgcactggt 0 0 64.85 40.37 24.48   chr 37 1029429 1029346 View Leu TAG cgggtgcggc taccactcga 0 0 71.46 48.77 22.69   chr 38 1021599 1021515 View Leu CAA ctgaatgcgt tcgccggcgc 0 0 69.43 44.90 24.53   chr 39 983966 983892 View Glu CTC gagtggacgc ttccaacttc 0 0 59.86 33.89 25.97   chr 40 912347 912265 View Ser TGA cgtcgtgtac cttctcgacg 0 0 58.38 37.46 20.92   chr 41 908370 908297 View Thr TGT atccgggtgc tgataccccc 0 0 50.88 29.92 20.96   chr 42 611807 611737 View Gly TCC cagtgggtgc tttctgtcga 0 0 72.10 56.97 15.13   chr 43 594271 594199 View Arg CCT ccggacgtgt tgcagcgagg 0 0 66.43 42.62 23.81   chr 44 421498 421424 View Met CAT atggattgat ctcctctgga 0 0 63.10 30.83 32.27   chr 45 110249 110177 View Arg GCG acctgagtga ttctcacagt 0 0 50.23 22.27 27.96   chr 46 103062 102989 View Val TAC atacgggtac ctcacgttct 0 0 74.98 52.01 22.97   chr 47 97728 97655 View Phe GAA acggacacga tattctgaga 0 0 74.29 54.21 20.08   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.