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tRNAscan-SE Analysis of Halobacterium salinarum R1

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> UCSC Genome Browser >> Genome DB >> Genome Seq

tRNAs Sorted by tRNA Isoacceptor Type plain text version [Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val] [Selenocysteine] [Possible pseudogene] [Undetermined] Sequence Name tRNA # tRNA Bounds Link to Genome Browser tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr 24 1914848 1914919 View Ala CGC accagtatgc tccttctccc 0 0 76.68 53.42 23.26   chr 26 1972429 1972358 View Ala CGC gcgcggtcgc ctcctgtatt 0 0 76.68 53.42 23.26   chr 7 585273 585344 View Ala GGC atgcgttcgc ctcccgttcc 0 0 70.00 45.97 24.03   chr 21 1865200 1865271 View Ala TGC atcgggaggt tcccgttcgg 0 0 79.40 63.18 16.22     chr 23 1905479 1905551 View Arg CCG gtgcacgtgt tgttctgcgt 0 0 70.66 53.60 17.06   chr 43 594271 594199 View Arg CCT ccggacgtgt tgcagcgagg 0 0 66.43 42.62 23.81   chr 45 110249 110177 View Arg GCG acctgagtga ttctcacagt 0 0 50.23 22.27 27.96   chr 6 455189 455263 View Arg TCG gtgggacgca ctcgattcct 0 0 72.48 55.42 17.06   chr 28 1826892 1826818 View Arg TCT tgccggatgc tggcgtcggc 0 0 73.82 58.33 15.49     chr 1 114783 114855 View Asn GTT tagggtgcga tcacttcctc 0 0 63.25 43.31 19.94     chr 25 1990583 1990655 View Asp GTC agtgcagcca ctttctccgt 0 0 67.24 45.17 22.07     chr 22 1868872 1868947 View Cys GCA gtagtcgtgt tttcagcagc 0 0 69.09 45.69 23.40     chr 29 1765201 1765129 View Gln CTG gcagccacgc cttctggcgt 0 0 50.49 14.75 35.74   chr 5 400936 401008 View Gln TTG ccgcgagtgc ctcaccgatc 0 0 61.86 35.02 26.84     chr 39 983966 983892 View Glu CTC gagtggacgc ttccaacttc 0 0 59.86 33.89 25.97   chr 13 974980 975054 View Glu TTC ggatgcggac tttcttgcgg 0 0 68.73 46.69 22.04     chr 31 1488514 1488444 View Gly CCC agcgcggcgc tccttcacgc 0 0 65.26 46.28 18.98   chr 33 1247169 1247099 View Gly GCC aatgcgaagg tttctcaccg 0 0 62.22 37.99 24.23   chr 42 611807 611737 View Gly TCC cagtgggtgc tttctgtcga 0 0 72.10 56.97 15.13     chr 19 1585878 1585950 View His GTG ggatgcagtg cttttcgcga 0 0 46.60 25.17 21.43     chr 16 1401930 1402003 View Ile GAT cgaagtgcgc ctagcggttc 0 0 59.84 35.26 24.58     chr 38 1021599 1021515 View Leu CAA ctgaatgcgt tcgccggcgc 0 0 69.43 44.90 24.53   chr 12 854562 854646 View Leu CAG acgcgaccga ttcgacttct 0 0 64.42 39.68 24.74   chr 36 1100932 1100848 View Leu GAG ccgtacgcga tcgcactggt 0 0 64.85 40.37 24.48   chr 17 1406550 1406632 View Leu TAA ctacggagat ctcgttttgc 0 0 69.84 48.72 21.12   chr 37 1029429 1029346 View Leu TAG cgggtgcggc taccactcga 0 0 71.46 48.77 22.69     chr 8 739041 739114 View Lys CTT ggatgcgttc ctttctgaac 0 0 86.03 68.75 17.28   chr 27 1870253 1870180 View Lys TTT gtgtactcgt ttcgaccgct 0 0 85.16 67.69 17.47     chr 44 421498 421424 View Met CAT atggattgat ctcctctgga 0 0 63.10 30.83 32.27   chr 2 114945 115053 View Met CAT catcgccagc tccatttcct 114985 115017 60.74 43.24 17.50   chr 34 1209317 1209160 View Met CAT ggcaagacga ctcctgcgat 78 136 65.69 49.89 15.80     chr 47 97728 97655 View Phe GAA acggacacga tattctgaga 0 0 74.29 54.21 20.08     chr 32 1450448 1450376 View Pro CGG tctcacgtgc ctacacactt 0 0 59.60 33.24 26.36   chr 15 1268469 1268539 View Pro GGG acccagatac ctcaaaataa 0 0 47.58 22.15 25.43   chr 20 1596559 1596631 View Pro TGG gtggtgatac tactgtttaa 0 0 63.72 38.80 24.92     chr 4 181259 181343 View Ser CGA tatcgaacga cttctcggac 0 0 62.46 30.16 32.30   chr 11 852160 852242 View Ser GCT tcgaaagcct cctttcacag 0 0 69.78 53.17 16.61   chr 30 1531342 1531261 View Ser GGA ggaggactgg tttctcgcga 0 0 56.38 33.71 22.67   chr 40 912347 912265 View Ser TGA cgtcgtgtac cttctcgacg 0 0 58.38 37.46 20.92     chr 10 844946 845017 View Thr CGT gtcgcggcgc tcaggaagtc 0 0 74.36 50.46 23.90   chr 18 1490893 1490964 View Thr GGT cgtaatgcgt tttcctgcgg 0 0 65.68 44.64 21.04   chr 41 908370 908297 View Thr TGT atccgggtgc tgataccccc 0 0 50.88 29.92 20.96     chr 9 763036 763211 View Trp CCA tggaatgcac tacccttact 763074 763175 56.31 40.91 15.40     chr 3 167477 167550 View Tyr GTA acgagtgcgt tttcctcacc 0 0 64.55 31.75 32.80     chr 35 1147215 1147141 View Val CAC actactgtcc ttacttcgct 0 0 70.04 45.96 24.08   chr 14 1219519 1219593 View Val GAC gatgacgcga ttcacgccgc 0 0 69.70 46.52 23.18   chr 46 103062 102989 View Val TAC atacgggtac ctcacgttct 0 0 74.98 52.01 22.97   Note: Only introns located between position 37 and 38 are listed in the table above.

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.