Genomic tRNA Database: Haloarcula marismortui ATCC 43049

tRNAscan-SE Analysis of Haloarcula marismortui ATCC 43049

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Predicted tRNA Secondary Structures

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chrI.trna33 (1-72)	Length: 72 bp
Type: Ala	Anticodon: CGC at 33-35 (33-35)	Score: 76.83
Seq: GGGCTCGTAGATCAGTGGCAGATCGCTTCCTTCGCAAGGAAGAGGcCCCGGGTTCAAATCCCGGCGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna40 (1-72)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (33-35)	Score: 66.41
Seq: GGGCTCGTAGATCAGGGGTAGATCACTCCCTTGGCATGGGAGAGGcCCCGGGTTCAAATCCCGGCGAGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna23 (1-72)	Length: 72 bp
Type: Ala	Anticodon: TGC at 33-35 (33-35)	Score: 84.58
Seq: GGGCCCATAGCTCAGCGGGAGAGCGCCGCCTTTGCAAGGCGGAGGcCCTGGGTTCAAATCCCAGTGGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna36 (1-73)	Length: 73 bp
Type: Arg	Anticodon: CCG at 34-36 (34-36)	Score: 68.06
Seq: GGGCGGCTAGTTCAGCGGAcAGAACGCCTGGTTCCGGACCAGATGGtCGGGGGTTCAAATCCCTCGCCGCCCG
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chrI.trna4 (1-74)	Length: 74 bp
Type: Arg	Anticodon: CCT at 35-37 (35-37)	Score: 70.57
Seq: GGGCGTGTGGCCTAGTGGAccAGGGCGAGGGGTTCCTAACCCCTAGAaCGCGGGTTCGAATCCCGCCACGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna14 (1-73)	Length: 73 bp
Type: Arg	Anticodon: GCG at 35-37 (35-37)	Score: 51.81
Seq: GTCCGGATAGGGTAGTGGActATCCTCTTGGCTTGCGGAGCCAGGGACCGGAGTTCAAATCTCCGTCCGGACG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna9 (1-75)	Length: 75 bp
Type: Arg	Anticodon: TCG at 36-38 (36-38)	Score: 68.70
Seq: GGGCGCTTAGCTCAGCTtGGAcAGAGTGCTTGGCTTCGGACCAAACCGtCGGGGGTTCAAATCCCTCAGCGCCCG
Str: >>>>>>>..>>>>..........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chrI.trna20 (1-105)	Length: 105 bp
Type: Arg	Anticodon: TCT at 36-38 (36-38)	Score: 72.07
Possible intron: 40-69 (40-69)
Seq: GGGCACGTAGCTCAGTCcGGAtAGAGCGTCGGACTTCTAtctccgctggcgctgccatcgggggaagacATCCGACGGtCGTGGGTTCGAATCCCACCGTGCCCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.....................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna34 (1-73)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (34-36)	Score: 64.40
Seq: GCCGCCGTAGCTCAGTTGGTAGAGCACCTGGTTGTTACCCAGGTTGtCCCAGGTTCGAGCCCTGGCGGTGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna17 (1-73)	Length: 73 bp
Type: Asp	Anticodon: GTC at 35-37 (35-37)	Score: 66.50
Seq: GCCCGGATGGTGTAGTGGCccATCATACGACCCTGTCACGGTCGTGACGCGGGTTCAAATCCCGCTCCGGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna18 (1-73)	Length: 73 bp
Type: Asp	Anticodon: GTC at 35-37 (35-37)	Score: 66.50
Seq: GCCCGGATGGTGTAGTGGCccATCATACGACCCTGTCACGGTCGTGACGCGGGTTCAAATCCCGCTCCGGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna24 (1-76)	Length: 76 bp
Type: Cys	Anticodon: GCA at 37-39 (37-39)	Score: 68.03
Seq: GCCAAGGTGGCAGAGTCtGGCctAACGCAGCGGCCTGCAGAGCCGCCCAtCGCCGGTTCAAATCCGGCCCTTGGCT
Str: >>>>>>>..>>...............<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna30 (1-73)	Length: 73 bp
Type: Gln	Anticodon: CTG at 35-37 (35-37)	Score: 48.78
Seq: AGTCCATTGGGGTAGTGGCcaATCCTGAAGCCTTCTGGGGGCTTCGACCCTGGTTCGAATCCAGGATGGACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna38 (1-73)	Length: 73 bp
Type: Gln	Anticodon: TTG at 35-37 (35-37)	Score: 62.86
Seq: AGTCCCGTGGTGTAGTGGCcaATCATAAGGGCCTTTGGAGCCCTTGACGGCGGTTCGAATCCGCCCGGGACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

plasmid_pNG600.trna50 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 48.52
Seq: GCTCCGTTGGTGTAGCTcGGCcaACCATCTCGGCATCTCACGTCGAGGACCGAGGTTCAAATCCTCGACGGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna45 (1-75)	Length: 75 bp
Type: Glu	Anticodon: CTC at 37-39 (37-39)	Score: 62.56
Seq: GCTCCGTTGGTGTAGTCcGGCcaATCATATCACCCTCTCACGGTGATGACTAGGGTTCAAATCCCTGACGGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna42 (1-75)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (37-39)	Score: 62.47
Seq: GCTCGGTTGGTGTAGTCcGGCcaATCATCTTGGCCTTTCGAGCCGAGGACCAGGGTTCAAATCCCTGACCGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna19 (1-71)	Length: 71 bp
Type: Gly	Anticodon: CCC at 33-35 (33-35)	Score: 71.01
Seq: GCGCCGGTGGTCCAGTGGTAGGACATTGCCTTCCCAAGGCAATAGCCCGGGTTCAATTCCCGGCCGGCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
BHB: CGCGAGCCTCGGCGCGACTGCAA]CGAGCGCCGGTGGTCCAGTGGTAGGACATTGCCTTCCCAAGGCAATAGCCCGGGTTCAATTCCCGGCCGGCGCA

chrI.trna12 (1-72)	Length: 72 bp
Type: Gly	Anticodon: GCC at 34-36 (34-36)	Score: 61.90
Seq: GCGCTGGTAGTGTAGTTGGTATCACGTGACCTTGCCATGGTCACAACCTGGGTTCAAATCCCAGCCAGCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna47 (1-71)	Length: 71 bp
Type: Gly	Anticodon: TCC at 33-35 (33-35)	Score: 71.18
Seq: GCGGCGGTGGTCTAGTGGTAGGACCTGAGCCTTCCAAGCTCATGGCCCGGGTTCAAATCCCGGTCGCCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna21 (1-71)	Length: 71 bp
Type: His	Anticodon: GTG at 33-35 (33-35)	Score: 46.57
Seq: TCCGGGTTGGGGTAGTGGTATCCTTCAGCCTTGTGGTGGCTGAGACGTGGGTTCAATTCCCGCACCCGGAC
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna26 (1-74)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (35-37)	Score: 62.60
Seq: GGGCCAATAGCTCAATCaGGTTGAGCGCTCGGCTGATAACCGGGAGGtTCGCGGTTCAAATCCGCGTTGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna43 (1-84)	Length: 84 bp
Type: Leu	Anticodon: CAA at 36-38 (36-38)	Score: 71.31
Seq: GCGAGGGTAGCCAAGCCaGGAaACGGCGGCGGACTCAAGATCCGCTCCCGTAGGGGTcCAAGGGTTCAAATCCCTTCCCTCGCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna2 (1-85)	Length: 85 bp
Type: Leu	Anticodon: CAG at 37-39 (37-39)	Score: 63.38
Seq: GCAGGGATAGCCAAGTTtGGCcaACGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTcCGCAGGTTCAAATCCTGCTCCCTGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna44 (1-85)	Length: 85 bp
Type: Leu	Anticodon: GAG at 37-39 (37-39)	Score: 64.04
Seq: GCGTGGGTAGCCAAGCCaGGCcaACGGCGCAGCGTTGAGGGCGCTGTCCCGTAGGGGTcCGCCGGTTCGAATCCGGTCCCACGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna28 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAA at 37-39 (37-39)	Score: 70.86
Seq: GCGAGGGTAGCCGAGCTtGGCcaAAGGCGGTGGGCTTAAGACCCGCTCCCGTAGGGGTcCGTGGGTTCGAATCCCATCCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna7 (1-85)	Length: 85 bp
Type: Leu	Anticodon: TAG at 37-39 (37-39)	Score: 69.45
Seq: GCGCGGGTTGCCGAGCCaGGCcaAAGGCGTAGCGCTTAGGACGCTATCCCGTAGGGGTcCGCCGGTTCGAATCCGGTCCCGCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna5 (1-74)	Length: 74 bp
Type: Lys	Anticodon: CTT at 35-37 (35-37)	Score: 87.54
Seq: GGGCCGGTAGCTCAGTCtGGCAGAGCGACGGCCTCTTAAGCCGTCGGtCGAGGGTTCAAATCCCTTCCGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrII.trna3 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 46.18
Seq: GGGCTCGGGGCCTatGAGGCAcAGGCGTGGGACTTTTAATCCCGAGAcAGAGGGTTCGAATCCCTCCGAGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna29 (1-74)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (35-37)	Score: 79.28
Seq: GGGCCGGTAGCTCAGTTaGGCAGAGCGTCTGGCTTTTAACCAGATGGtCGGGGGTTCAACTCCCTCCCGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna27 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 60.33
Seq: AGCGGGATGGGATAGCCaGGAgATTCCGGCGGGCTCATAACCCGCAGAtCGGTAGTTCAAATCTACCTCCCGCTA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna35 (1-75)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (36-38)	Score: 75.80
Seq: GGGCCCTTAGCTTAGTCtGGTtAAAGCGATCGGCTCATAACCGATTGAgCGCTGGTTCAAATCCGGCAGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna13 (1-145)	Length: 145 bp
Type: Met	Anticodon: CAT at 35-37 (35-37)	Score: 52.86
Possible intron: 39-109 (39-109)
Seq: GCCCGGGTGGCTTAGCTGGAcATAGCGCCGCACTCATAgggtctttcgactcatgcggcagtgcacccgtcatgaccccggggcgctcgtcacgccccagacctgggccATGCGGAGAtCGAGGGTTCGGAGCCCTCCCCGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>..............................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna16 (1-74)	Length: 74 bp
Type: Phe	Anticodon: GAA at 35-37 (35-37)	Score: 75.70
Seq: GCCGCCTTAGCTCAGACtGGGAGAGCACTCGACTGAAGATCGAGCTGtCCCCGGTTCAAATCCGGGAGGCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna25 (1-73)	Length: 73 bp
Type: Pro	Anticodon: CGG at 35-37 (35-37)	Score: 61.11
Seq: GGGCCGGTGGGGTAGCCtGGTATCCTTCGGCCTTCGGGTGGCCGTAACCGCGATTCGAATTCGCGCCGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna46 (1-71)	Length: 71 bp
Type: Pro	Anticodon: GGG at 33-35 (33-35)	Score: 46.47
Seq: GGGACCGTGGGGTAGCGGTATCCTCGGCGCATGGGGTGCGTCGGACCTGAGTTCGAATCTCGGCGGTCCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna22 (1-73)	Length: 73 bp
Type: Pro	Anticodon: TGG at 35-37 (35-37)	Score: 58.03
Seq: GGGATCGTGGGGTAGCTtGGTAACCTTCGGGCCTTGGGTGCCCGCGcCCCTAGTTCAAATCTGGGCGATCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrI.trna39 (1-85)	Length: 85 bp
Type: Ser	Anticodon: CGA at 36-38 (36-38)	Score: 62.46
Seq: GCCGAGGTAGCCTAGCCtGGCcAAGGCGGTTGCTTCGAGAGCAACTGTCCTCACGGACtCAGGAGTTCAAATCTCCTCCTCGGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna1 (1-85)	Length: 85 bp
Type: Ser	Anticodon: GCT at 37-39 (37-39)	Score: 66.48
Seq: GTCGTGGTAGCCAAGCCtGGCccAAGGCGCAGGGTTGCTAACTCTGTGGCGTACaGCCTCCGGGGTTCGAATCCCCGCCACGACG
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<.

chrI.trna31 (1-84)	Length: 84 bp
Type: Ser	Anticodon: GGA at 35-37 (35-37)	Score: 60.46
Seq: GCCAGAATGGCCGAATCtGGTAAGGCGCACGCCTGGAAAGCGTGTTCCCATTTGGGAtTCTGGGTTCAAATCCCAGTTCTGGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>..<<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna48 (1-84)	Length: 84 bp
Type: Ser	Anticodon: TGA at 35-37 (35-37)	Score: 60.17
Seq: GGTGGGATGGCAGAGCGGCctATTGCGCCTGCCTTGAAAGCAGGTATCCTCACGGATtCCTGGGTTCAAATCCCAGTCCCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chrI.trna41 (1-74)	Length: 74 bp
Type: Thr	Anticodon: CGT at 35-37 (35-37)	Score: 75.07
Seq: GCCGGTGTAGCTCAGACtGGCAGAGCGAATCCTTCGTAAGGATTAGGcCGAGGGTTCAAATCCCTCCACCGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna32 (1-72)	Length: 72 bp
Type: Thr	Anticodon: GGT at 33-35 (33-35)	Score: 65.68
Seq: GCCTGGGTAGCTTAGCGGTAAAGCGCGTCCTTGGTAAGGACGAGAcCCCGGATTCAAATTCCGGCCTAGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna49 (1-74)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (35-37)	Score: 54.10
Seq: GCCAGGGGAGCTTggGTGGTccAAGCACTCGACTTGTAATCGAGAGTtCGTGGGTTCAAATCCCACCCCTGGCT
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna6 (1-181)	Length: 181 bp
Type: Trp	Anticodon: CCA at 35-37 (35-37)	Score: 56.36
Possible intron: 39-145 (39-145)
Seq: GGGGTCGTGGCCTAGTCcGGGAAGGCGGCTGACTCCAGaggccacgcgcctgggacgacactccaagggctgatatactgagcggccggctgatcaccggttcgcgacgatgaccctctggagttccgaggcgcaggacggagatATCAGCCGAtCGGGGGTTCAAATCCCTCCGACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>..................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna8 (1-102)	Length: 102 bp
Type: Trp	Anticodon: CCA at 33-35 (33-35)	Score: 23.36
Possible intron: 37-51 (37-51)
Seq: GGAAGGGTGGCTCAGTGGTAGAGCGCTACCAACCAAcatgccagaatcggtTGGTGGTTACCCCGCAAAGGGCTcCGCGtGGTTCGACTCCCGCCCCTTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>......................<<<<<...>>>......<<<....>>>.>>.......<<<<<<<<<<<<.

chrI.trna37 (1-74)	Length: 74 bp
Type: Tyr	Anticodon: GTA at 35-37 (35-37)	Score: 65.59
Seq: CCGCCCTTAGCTCAGACtGGTAGAGCAGTCGACTGTAGATCGACTTGtCCCCCGTTCAAATCGGGGAGGGCGGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna10 (1-75)	Length: 75 bp
Type: Val	Anticodon: CAC at 36-38 (36-38)	Score: 63.04
Seq: GGGTTGGTGATCTAGTTcGGTtATGATACCTCCTTCACACGGAGGAAGtCGGCGGTTCGAATCCGCCCCAACCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna11 (1-75)	Length: 75 bp
Type: Val	Anticodon: GAC at 36-38 (36-38)	Score: 64.73
Seq: GGGTTCGTGGTCTAGGTcGGTtATGACACCTCCTTGACATGGAGGAGGcCGGCGGTTCAAATCCGCCCGAACCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrI.trna15 (1-74)	Length: 74 bp
Type: Val	Anticodon: TAC at 35-37 (35-37)	Score: 71.31
Seq: GGGTCCGTGGTCTAGTTGGTtATGACGTGGCCTTTACAAGGCCGAGGcCGGTGGTTCGAATCCGCCCGGACCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.